Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18195

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,922,807	+		DZA65_RS18190	0.75	-0.3
3,922,807	+		DZA65_RS18190	0.75	-0.6
3,922,808	-		DZA65_RS18190	0.75	+0.7
3,922,808	-		DZA65_RS18190	0.75	-1.3
3,922,865	+		DZA65_RS18190	0.78	-0.5
3,922,866	-		DZA65_RS18190	0.79	-0.4
3,923,107	+				+0.8
3,923,108	-				+0.5
3,923,205	-				+2.1
3,923,206	+				+0.2
3,923,206	+				-1.4
3,923,206	+				-0.6
3,923,207	-				-0.5
3,923,207	-				-0.3
3,923,207	-				-0.5
3,923,207	-				+0.7
3,923,207	-				-0.2
3,923,250	-				+1.1
3,923,274	-				+1.5
3,923,316	+				-0.4
3,923,316	+				+1.4
3,923,317	-				+0.8
3,923,317	-				-0.3
3,923,318	+				+2.6
3,923,318	+				-0.4
3,923,319	-				-0.4
3,923,393	+				+0.6
3,923,394	-				+1.0
3,923,567	+				+1.3
3,923,567	+				-2.0
3,923,568	-				-0.8
3,923,568	-				+1.1
3,923,704	+				+0.4
3,923,704	+				-2.8
3,923,705	-				-0.0
3,923,736	-				+0.5
3,923,747	-				-1.5
3,923,747	-				+0.4
3,923,747	-				+0.1
3,923,747	-				-0.2
3,923,747	-				+0.5
3,923,748	+				-1.4
3,923,748	+				+0.3
3,923,748	+				-1.8
3,923,748	+				+0.8
3,923,749	-				-0.8
3,923,749	-				+2.0
3,923,749	-				-0.8
3,923,749	-				-0.4
3,923,751	+				-0.6
3,923,751	+				-1.5
3,923,757	+				-0.0
3,923,795	+				+1.8
3,923,795	+				-0.8
3,923,795	+				-0.7
3,923,795	+				-1.2
3,923,795	+				+1.3
3,923,796	-				+1.1
3,923,796	-				+0.7
3,923,798	+				+1.1
3,923,799	-				+1.2
3,923,799	-				-0.8
3,923,799	-				+0.8
3,923,799	-				+0.6
3,923,812	-				-0.5
3,923,836	+				+1.5
3,923,868	-				+0.2
3,923,868	-				-0.2
3,923,872	-				+1.2
3,923,939	+		DZA65_RS18195	0.10	-0.6
3,923,940	-		DZA65_RS18195	0.11	-2.0
3,923,940	-		DZA65_RS18195	0.11	+0.2
3,923,940	-		DZA65_RS18195	0.11	-0.9
3,923,958	-		DZA65_RS18195	0.12	-0.2
3,923,981	+		DZA65_RS18195	0.13	-1.0
3,923,988	+		DZA65_RS18195	0.14	-1.0
3,924,093	-		DZA65_RS18195	0.21	+1.7
3,924,093	-		DZA65_RS18195	0.21	+0.8
3,924,110	+		DZA65_RS18195	0.22	-1.8
3,924,110	+		DZA65_RS18195	0.22	+1.8
3,924,110	+		DZA65_RS18195	0.22	+0.6
3,924,111	-		DZA65_RS18195	0.22	-1.4
3,924,125	+		DZA65_RS18195	0.23	+0.8
3,924,165	+		DZA65_RS18195	0.25	-0.6
3,924,165	+		DZA65_RS18195	0.25	+0.3
3,924,165	+				+2.6
3,924,165	+		DZA65_RS18195	0.25	-0.3
3,924,165	+		DZA65_RS18195	0.25	+1.0
3,924,165	+				-1.2
3,924,165	+		DZA65_RS18195	0.25	-0.8
3,924,166	-		DZA65_RS18195	0.25	-0.6
3,924,166	-		DZA65_RS18195	0.25	-1.2
3,924,175	+		DZA65_RS18195	0.26	+0.2
3,924,182	+		DZA65_RS18195	0.26	+1.3
3,924,182	+		DZA65_RS18195	0.26	-0.9
3,924,207	+		DZA65_RS18195	0.28	+0.0
3,924,207	+		DZA65_RS18195	0.28	-1.6
3,924,208	-		DZA65_RS18195	0.28	+0.8
3,924,209	+		DZA65_RS18195	0.28	-0.5
3,924,209	+		DZA65_RS18195	0.28	+1.7
3,924,331	+		DZA65_RS18195	0.36	-0.0
3,924,331	+		DZA65_RS18195	0.36	+0.2
3,924,332	-		DZA65_RS18195	0.36	-0.1
3,924,370	+		DZA65_RS18195	0.39	-0.4
3,924,370	+		DZA65_RS18195	0.39	+0.6
3,924,370	+		DZA65_RS18195	0.39	-0.2
3,924,370	+		DZA65_RS18195	0.39	+0.2
3,924,371	-		DZA65_RS18195	0.39	+0.6
3,924,373	+		DZA65_RS18195	0.39	-1.5
3,924,373	+		DZA65_RS18195	0.39	+1.1
3,924,373	+				-0.2
3,924,374	-		DZA65_RS18195	0.39	-0.9
3,924,374	-		DZA65_RS18195	0.39	-2.5
3,924,382	+		DZA65_RS18195	0.39	-0.1
3,924,479	+		DZA65_RS18195	0.46	+0.8
3,924,479	+		DZA65_RS18195	0.46	-0.9
3,924,480	-		DZA65_RS18195	0.46	-0.5
3,924,480	-		DZA65_RS18195	0.46	-1.8
3,924,528	-		DZA65_RS18195	0.49	-0.0
3,924,774	-		DZA65_RS18195	0.65	+0.3
3,924,774	-		DZA65_RS18195	0.65	+1.2
3,924,786	-		DZA65_RS18195	0.66	+0.5
3,924,967	+		DZA65_RS18195	0.77	+0.5
3,924,967	+		DZA65_RS18195	0.77	+0.1
3,924,967	+		DZA65_RS18195	0.77	-0.3
3,924,967	+		DZA65_RS18195	0.77	-1.5
3,924,968	-		DZA65_RS18195	0.77	-2.4
3,924,968	-		DZA65_RS18195	0.77	-1.5
3,925,082	+		DZA65_RS18195	0.85	+0.1
3,925,082	+		DZA65_RS18195	0.85	-0.3
3,925,295	+				-1.5
3,925,296	-				+0.3
3,925,311	+				+1.6
3,925,311	+				+1.0
3,925,324	-				-0.2
3,925,330	-				+0.8
3,925,330	-				-2.2
3,925,340	-				+0.4
3,925,362	+				+0.4
3,925,362	+				-2.4
3,925,362	+				-0.4
3,925,363	-				-0.3
3,925,363	-				+0.4
3,925,366	+				+2.4
3,925,366	+				+0.2
3,925,366	+				-2.0
3,925,366	+				-0.8
3,925,366	+				+1.8
3,925,366	+				+0.2
3,925,366	+				+0.3
3,925,366	+				+0.0
3,925,367	-				-2.5
3,925,367	-				-1.1
3,925,367	-				+0.9
3,925,367	-				+3.6
3,925,367	-				+0.8
3,925,367	-				-1.8
3,925,367	-				+1.3
3,925,387	+				+0.0
3,925,418	+				-1.8
3,925,421	+				-1.5
3,925,421	+				-1.2
3,925,422	-				-1.2
3,925,422	-				+0.1
3,925,427	+				-0.1
3,925,427	+				+1.2
3,925,427	+				+0.8
3,925,428	-				-0.6
3,925,428	-				-1.5
3,925,428	-				-0.8
3,925,428	-				-1.8
3,925,457	+				+0.8
3,925,457	+				-1.4
3,925,458	-				+1.0
3,925,471	+				+0.1
3,925,471	+				-0.8
3,925,471	+				-1.8
3,925,471	+				+0.1
3,925,471	+				+0.5
3,925,471	+				-0.9
3,925,471	+				+0.8
3,925,471	+				+0.7
3,925,471	+				-0.0
3,925,471	+				-0.9
3,925,472	-				-1.4
3,925,472	-				+1.7
3,925,472	-				-2.5
3,925,472	-				+0.8
3,925,472	-				-0.1
3,925,472	-				-1.6
3,925,472	-				-0.2
3,925,472	-				+0.8
3,925,472	-				-0.0
3,925,472	-				-0.8
3,925,472	-				+0.8
3,925,472	-				-1.2
3,925,472	-				+0.1
3,925,486	+				-0.1
3,925,486	+				+0.5
3,925,487	-				+0.8
3,925,487	-				+0.4
3,925,732	+		DZA65_RS18200	0.78	+0.4
3,925,732	+		DZA65_RS18200	0.78	+0.6
3,925,733	-		DZA65_RS18200	0.78	+0.0
3,925,796	+				+0.5
3,925,796	+				+0.1
3,925,796	+				+0.4
3,925,796	+				-0.6
3,925,796	+				-1.4
3,925,796	+				-0.8
3,925,796	+				+0.2
3,925,797	-				-0.5
3,925,829	+				-1.5
3,925,831	+				+1.4
3,925,831	+				-0.4
3,925,831	+				+0.8
3,925,831	+				-0.5
3,925,832	-				+0.2
3,925,832	-				-0.2
3,925,832	-				+0.1
3,925,874	-				+0.2
3,925,876	-				-0.4
3,926,197	+		DZA65_RS18210	0.40	-2.0
3,926,202	-		DZA65_RS18210	0.41	+0.5