Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18115

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,897,538	+				-0.1
3,897,538	+				+0.1
3,897,538	+				+1.4
3,897,610	+				+0.5
3,897,610	+				-0.4
3,897,610	+				-0.9
3,897,611	-				-0.5
3,897,611	-				-0.4
3,897,611	-				+1.8
3,897,611	-				-3.3
3,897,611	-				-1.5
3,897,631	+				+1.5
3,897,639	+				+0.2
3,897,639	+				+0.4
3,897,640	-				+0.9
3,897,691	+		DZA65_RS18110	0.10	+0.6
3,897,691	+		DZA65_RS18110	0.10	+0.4
3,897,692	-		DZA65_RS18110	0.10	-0.5
3,897,875	-		DZA65_RS18110	0.38	-0.1
3,898,067	+		DZA65_RS18110	0.66	+0.8
3,898,068	-		DZA65_RS18110	0.66	+0.5
3,898,068	-		DZA65_RS18110	0.66	-0.5
3,898,117	+		DZA65_RS18110	0.74	+3.5
3,898,177	+		DZA65_RS18110	0.82	+0.5
3,898,190	-		DZA65_RS18110	0.84	+0.2
3,898,190	-		DZA65_RS18110	0.84	+0.1
3,898,190	-		DZA65_RS18110	0.84	-0.2
3,898,190	-		DZA65_RS18110	0.84	-0.0
3,898,288	-				-0.8
3,898,306	-				-0.6
3,898,406	-				+0.2
3,898,406	-				+1.8
3,898,406	-				+0.3
3,898,454	+				+1.0
3,898,454	+				+0.2
3,898,455	-				-0.2
3,898,462	+				-2.7
3,898,462	+				+1.4
3,898,462	+				+0.1
3,898,463	-				+0.3
3,898,468	+				-0.3
3,898,476	+				+0.5
3,898,476	+				-0.2
3,898,476	+				+1.0
3,898,486	+				+2.4
3,898,486	+				-0.8
3,898,487	-				-1.5
3,898,487	-				-0.2
3,898,487	-				+2.3
3,898,487	-				-0.5
3,898,487	-				+0.8
3,898,487	-				-1.0
3,898,487	-				+0.3
3,898,487	-				-1.4
3,898,530	+				-1.1
3,898,530	+				+1.4
3,898,530	+				+2.1
3,898,592	+		DZA65_RS18115	0.10	-1.1
3,898,603	+		DZA65_RS18115	0.12	+1.4
3,898,603	+		DZA65_RS18115	0.12	-0.2
3,898,604	-		DZA65_RS18115	0.12	-0.8
3,898,718	+		DZA65_RS18115	0.23	+0.3
3,898,719	-		DZA65_RS18115	0.23	-2.0
3,898,884	+		DZA65_RS18115	0.40	+0.3
3,898,884	+		DZA65_RS18115	0.40	+0.8
3,898,884	+		DZA65_RS18115	0.40	-0.8
3,898,885	-		DZA65_RS18115	0.41	+0.5
3,898,946	+		DZA65_RS18115	0.47	-0.5
3,898,946	+		DZA65_RS18115	0.47	-1.8
3,898,947	-		DZA65_RS18115	0.47	+0.8
3,898,964	+		DZA65_RS18115	0.49	+0.5
3,898,964	+		DZA65_RS18115	0.49	-0.5
3,898,964	+		DZA65_RS18115	0.49	+0.1
3,898,964	+		DZA65_RS18115	0.49	-1.8
3,898,964	+		DZA65_RS18115	0.49	-2.2
3,898,964	+		DZA65_RS18115	0.49	+1.6
3,898,965	-		DZA65_RS18115	0.49	-0.3
3,898,965	-				-0.8
3,898,965	-		DZA65_RS18115	0.49	-0.2
3,899,052	+		DZA65_RS18115	0.58	-0.9
3,899,125	+		DZA65_RS18115	0.65	-0.8
3,899,125	+		DZA65_RS18115	0.65	-1.5
3,899,125	+		DZA65_RS18115	0.65	-0.1
3,899,126	-		DZA65_RS18115	0.65	-0.7
3,899,128	+		DZA65_RS18115	0.65	-0.0
3,899,129	-		DZA65_RS18115	0.66	+0.8
3,899,129	-		DZA65_RS18115	0.66	+0.3
3,899,129	-		DZA65_RS18115	0.66	+0.0
3,899,129	-		DZA65_RS18115	0.66	-2.8
3,899,129	-		DZA65_RS18115	0.66	-1.5
3,899,131	+		DZA65_RS18115	0.66	-1.2
3,899,143	+		DZA65_RS18115	0.67	-0.1
3,899,143	+		DZA65_RS18115	0.67	-1.2
3,899,167	+		DZA65_RS18115	0.69	-0.2
3,899,167	+		DZA65_RS18115	0.69	-0.4
3,899,167	+		DZA65_RS18115	0.69	+0.8
3,899,167	+		DZA65_RS18115	0.69	-1.5
3,899,167	+		DZA65_RS18115	0.69	+1.3
3,899,167	+		DZA65_RS18115	0.69	+1.1
3,899,168	-		DZA65_RS18115	0.70	-2.0
3,899,168	-		DZA65_RS18115	0.70	+0.1
3,899,168	-		DZA65_RS18115	0.70	+0.4
3,899,168	-		DZA65_RS18115	0.70	+0.1
3,899,223	+		DZA65_RS18115	0.75	+0.1
3,899,224	-		DZA65_RS18115	0.75	+0.8
3,899,224	-		DZA65_RS18115	0.75	-1.5
3,899,224	-		DZA65_RS18115	0.75	+0.1
3,899,385	+				-2.4
3,899,385	+				+2.0
3,899,385	+				-1.9
3,899,385	+				-0.6
3,899,386	-				-1.5
3,899,386	-				+0.9
3,899,391	+				+1.3
3,899,392	-				-1.1
3,899,444	+				+2.4
3,899,444	+				+0.9
3,899,444	+				+0.6
3,899,445	-				-0.8
3,899,445	-				-3.0
3,899,445	-				-1.2
3,899,445	-				-0.2
3,899,445	-				-3.5
3,899,462	+				-0.0
3,899,462	+				-0.2
3,899,462	+				+2.2
3,899,462	+				+0.1
3,899,462	+				+0.2
3,899,462	+				-1.2
3,899,462	+				-0.8
3,899,462	+				-2.0
3,899,463	-				+1.1
3,899,463	-				+0.8
3,899,463	-				-1.7
3,899,463	-				+0.2
3,899,463	-				+0.2
3,899,463	-				+0.1
3,899,463	-				-0.5
3,899,463	-				+1.6
3,899,463	-				+1.5
3,899,467	+				-0.2
3,899,467	+				-0.8
3,899,467	+				+0.6
3,899,468	-				+0.8
3,899,538	+				+0.1
3,899,539	-				+2.0
3,899,544	+				+1.0
3,899,544	+				+1.3
3,899,544	+				+1.5
3,899,545	-				-0.5
3,899,545	-				+0.6
3,899,545	-				+0.2
3,899,552	+				+3.1
3,899,552	+				+0.2
3,899,553	-				-0.4
3,899,553	-				-1.1
3,899,556	+				+1.4
3,899,557	-				-0.4
3,899,557	-				-1.5
3,899,625	+				+1.8
3,899,625	+				+1.4
3,899,625	+				-0.5
3,899,625	+				+0.3
3,899,625	+				+0.2
3,899,625	+				+0.2
3,899,625	+				-0.4
3,899,626	-				-0.6
3,899,626	-				-0.4
3,899,690	-		DZA65_RS18120	0.13	-1.3
3,899,733	+		DZA65_RS18120	0.17	-0.2
3,899,746	+		DZA65_RS18120	0.18	+0.4
3,899,746	+		DZA65_RS18120	0.18	+0.8
3,899,746	+		DZA65_RS18120	0.18	+0.2
3,899,746	+		DZA65_RS18120	0.18	+0.4
3,899,747	-		DZA65_RS18120	0.18	-1.5
3,899,747	-		DZA65_RS18120	0.18	+0.8
3,899,747	-		DZA65_RS18120	0.18	-0.9
3,899,748	+		DZA65_RS18120	0.19	-1.5
3,899,748	+		DZA65_RS18120	0.19	+1.2
3,899,748	+		DZA65_RS18120	0.19	+0.4
3,899,749	-		DZA65_RS18120	0.19	+1.8
3,899,749	-		DZA65_RS18120	0.19	-0.3
3,899,749	-		DZA65_RS18120	0.19	-0.8
3,899,749	-		DZA65_RS18120	0.19	-1.2
3,899,755	+		DZA65_RS18120	0.19	+0.6
3,899,755	+		DZA65_RS18120	0.19	-0.4
3,899,755	+		DZA65_RS18120	0.19	+1.9
3,899,755	+		DZA65_RS18120	0.19	+0.8
3,899,811	+		DZA65_RS18120	0.24	-1.2
3,899,811	+		DZA65_RS18120	0.24	+0.8
3,899,811	+				+1.4
3,899,811	+		DZA65_RS18120	0.24	+0.6
3,899,812	-		DZA65_RS18120	0.24	-1.5
3,899,812	-		DZA65_RS18120	0.24	-2.2
3,899,862	+		DZA65_RS18120	0.29	-0.8
3,899,862	+		DZA65_RS18120	0.29	-1.8
3,899,862	+		DZA65_RS18120	0.29	-1.2
3,899,863	-		DZA65_RS18120	0.29	-0.2
3,899,863	-		DZA65_RS18120	0.29	-0.9
3,899,863	-		DZA65_RS18120	0.29	+0.0
3,899,863	-		DZA65_RS18120	0.29	+1.4
3,900,072	+		DZA65_RS18120	0.47	+0.8
3,900,072	+		DZA65_RS18120	0.47	-0.8
3,900,072	+		DZA65_RS18120	0.47	-0.2
3,900,073	-		DZA65_RS18120	0.47	+0.8
3,900,096	+		DZA65_RS18120	0.49	+1.1
3,900,096	+		DZA65_RS18120	0.49	-2.4
3,900,097	-		DZA65_RS18120	0.49	+0.1
3,900,097	-		DZA65_RS18120	0.49	+0.4
3,900,210	+		DZA65_RS18120	0.59	+2.0
3,900,210	+		DZA65_RS18120	0.59	+0.5
3,900,210	+		DZA65_RS18120	0.59	-1.4
3,900,210	+		DZA65_RS18120	0.59	+1.3
3,900,211	-		DZA65_RS18120	0.59	+0.9
3,900,211	-		DZA65_RS18120	0.59	+0.7
3,900,211	-		DZA65_RS18120	0.59	+0.5
3,900,211	-		DZA65_RS18120	0.59	-0.8
3,900,217	+		DZA65_RS18120	0.60	+1.3
3,900,218	-		DZA65_RS18120	0.60	-0.8
3,900,255	+				-1.5
3,900,255	+		DZA65_RS18120	0.63	-0.3
3,900,255	+		DZA65_RS18120	0.63	+1.4
3,900,255	+		DZA65_RS18120	0.63	-0.1
3,900,255	+		DZA65_RS18120	0.63	-0.6
3,900,255	+		DZA65_RS18120	0.63	-0.6
3,900,255	+		DZA65_RS18120	0.63	+1.1
3,900,255	+		DZA65_RS18120	0.63	-0.1
3,900,255	+		DZA65_RS18120	0.63	+0.8
3,900,255	+		DZA65_RS18120	0.63	-0.5
3,900,255	+		DZA65_RS18120	0.63	+0.1
3,900,255	+		DZA65_RS18120	0.63	-1.2
3,900,255	+		DZA65_RS18120	0.63	-2.7
3,900,255	+		DZA65_RS18120	0.63	+0.1
3,900,255	+		DZA65_RS18120	0.63	+0.7
3,900,255	+		DZA65_RS18120	0.63	+3.0
3,900,255	+		DZA65_RS18120	0.63	+0.5
3,900,256	-		DZA65_RS18120	0.63	-1.5
3,900,256	-		DZA65_RS18120	0.63	+0.8
3,900,256	-		DZA65_RS18120	0.63	+2.0
3,900,256	-		DZA65_RS18120	0.63	-0.9
3,900,256	-		DZA65_RS18120	0.63	+0.8
3,900,256	-		DZA65_RS18120	0.63	+1.8
3,900,256	-		DZA65_RS18120	0.63	-0.1
3,900,256	-		DZA65_RS18120	0.63	-1.3
3,900,256	-		DZA65_RS18120	0.63	-0.2
3,900,256	-		DZA65_RS18120	0.63	-0.8
3,900,256	-		DZA65_RS18120	0.63	-1.8
3,900,256	-		DZA65_RS18120	0.63	-1.2
3,900,285	+		DZA65_RS18120	0.66	-0.8
3,900,286	-		DZA65_RS18120	0.66	-0.8
3,900,347	+		DZA65_RS18120	0.71	+0.7
3,900,347	+		DZA65_RS18120	0.71	+0.5
3,900,347	+		DZA65_RS18120	0.71	+0.8
3,900,347	+		DZA65_RS18120	0.71	+0.7
3,900,347	+		DZA65_RS18120	0.71	-0.0
3,900,347	+		DZA65_RS18120	0.71	-1.4
3,900,348	-		DZA65_RS18120	0.71	+1.2
3,900,348	-		DZA65_RS18120	0.71	+0.2
3,900,348	-		DZA65_RS18120	0.71	+0.3
3,900,348	-		DZA65_RS18120	0.71	-0.4
3,900,447	+		DZA65_RS18120	0.80	+0.5
3,900,447	+		DZA65_RS18120	0.80	-1.1
3,900,448	-		DZA65_RS18120	0.80	+0.4
3,900,448	-		DZA65_RS18120	0.80	-0.8
3,900,453	+		DZA65_RS18120	0.80	-1.1
3,900,453	+		DZA65_RS18120	0.80	+1.8
3,900,453	+		DZA65_RS18120	0.80	-0.3
3,900,454	-		DZA65_RS18120	0.80	+1.2
3,900,454	-		DZA65_RS18120	0.80	+0.2
3,900,454	-		DZA65_RS18120	0.80	+0.9
3,900,454	-		DZA65_RS18120	0.80	+0.6
3,900,454	-		DZA65_RS18120	0.80	-1.1
3,900,454	-		DZA65_RS18120	0.80	-0.2
3,900,462	+		DZA65_RS18120	0.81	+0.8
3,900,462	+		DZA65_RS18120	0.81	+0.8