Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18090

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,890,752	+		DZA65_RS18085	0.46	-2.0
3,890,752	+		DZA65_RS18085	0.46	-0.8
3,890,752	+		DZA65_RS18085	0.46	-1.0
3,890,752	+				-0.2
3,890,752	+		DZA65_RS18085	0.46	-0.6
3,890,753	-		DZA65_RS18085	0.46	+0.2
3,890,753	-		DZA65_RS18085	0.46	-1.2
3,890,753	-		DZA65_RS18085	0.46	-1.2
3,890,753	-		DZA65_RS18085	0.46	-0.6
3,890,753	-		DZA65_RS18085	0.46	-0.4
3,890,849	+		DZA65_RS18085	0.52	-0.3
3,890,849	+		DZA65_RS18085	0.52	-2.0
3,890,850	-		DZA65_RS18085	0.52	-0.8
3,890,850	-		DZA65_RS18085	0.52	-1.8
3,890,850	-		DZA65_RS18085	0.52	-0.8
3,890,851	+		DZA65_RS18085	0.52	-1.5
3,890,852	-		DZA65_RS18085	0.52	-0.0
3,890,852	-		DZA65_RS18085	0.52	-1.3
3,890,878	+		DZA65_RS18085	0.53	+0.1
3,890,879	-		DZA65_RS18085	0.53	-1.1
3,890,879	-		DZA65_RS18085	0.53	-0.6
3,890,903	+		DZA65_RS18085	0.55	+1.8
3,890,904	-		DZA65_RS18085	0.55	-0.4
3,890,925	+		DZA65_RS18085	0.56	-0.9
3,890,925	+		DZA65_RS18085	0.56	-0.8
3,890,925	+		DZA65_RS18085	0.56	-2.4
3,890,925	+		DZA65_RS18085	0.56	+0.8
3,890,925	+		DZA65_RS18085	0.56	-2.0
3,890,925	+		DZA65_RS18085	0.56	-0.6
3,890,925	+		DZA65_RS18085	0.56	-3.1
3,890,925	+		DZA65_RS18085	0.56	-0.8
3,890,926	-		DZA65_RS18085	0.56	+0.1
3,890,926	-		DZA65_RS18085	0.56	-2.1
3,890,926	-		DZA65_RS18085	0.56	-2.0
3,890,926	-		DZA65_RS18085	0.56	-0.2
3,890,926	-		DZA65_RS18085	0.56	-1.2
3,890,930	+		DZA65_RS18085	0.56	-0.7
3,890,937	+		DZA65_RS18085	0.57	-0.5
3,890,937	+		DZA65_RS18085	0.57	-2.5
3,891,046	+		DZA65_RS18085	0.63	-1.1
3,891,046	+		DZA65_RS18085	0.63	-2.0
3,891,046	+		DZA65_RS18085	0.63	-1.5
3,891,047	-		DZA65_RS18085	0.63	+0.2
3,891,166	+		DZA65_RS18085	0.70	-0.2
3,891,167	-		DZA65_RS18085	0.70	+0.5
3,891,206	+		DZA65_RS18085	0.72	-0.6
3,891,206	+		DZA65_RS18085	0.72	-0.8
3,891,206	+		DZA65_RS18085	0.72	+0.5
3,891,206	+		DZA65_RS18085	0.72	-0.2
3,891,207	-		DZA65_RS18085	0.73	-1.7
3,891,207	-		DZA65_RS18085	0.73	-0.2
3,891,352	+		DZA65_RS18085	0.81	-0.2
3,891,353	-		DZA65_RS18085	0.81	-0.5
3,891,353	-		DZA65_RS18085	0.81	-0.5
3,891,505	+		DZA65_RS18085	0.90	-1.2
3,891,505	+		DZA65_RS18085	0.90	+1.1
3,891,505	+		DZA65_RS18085	0.90	-2.0
3,891,505	+		DZA65_RS18085	0.90	-0.8
3,891,505	+		DZA65_RS18085	0.90	-0.6
3,891,505	+		DZA65_RS18085	0.90	-0.5
3,891,505	+		DZA65_RS18085	0.90	-2.6
3,891,505	+		DZA65_RS18085	0.90	-1.2
3,891,505	+		DZA65_RS18085	0.90	-1.2
3,891,506	-				-2.8
3,891,506	-				-0.7
3,891,506	-				-0.2
3,891,506	-				-2.7
3,891,506	-				-1.2
3,891,506	-				-0.6
3,891,506	-				-0.2
3,891,506	-				-2.0
3,891,506	-				-1.2
3,891,506	-				-0.8
3,891,506	-				-0.6
3,891,506	-				+0.1
3,891,506	-				+1.2
3,891,582	-				-1.4
3,891,582	-				+0.5
3,891,582	-				-0.7
3,891,582	-				-1.2
3,891,598	+				-2.0
3,891,599	-				-0.7
3,891,599	-				+1.4
3,891,664	+				-2.2
3,891,664	+				-0.8
3,891,678	+				-1.5
3,891,678	+				-1.0
3,891,681	+				+0.8
3,891,681	+				-1.2
3,891,681	+				-0.5
3,891,681	+				+0.4
3,891,681	+				-0.0
3,891,681	+				+0.1
3,891,681	+				-3.0
3,891,681	+				-0.5
3,891,681	+				-2.4
3,891,681	+				+0.5
3,891,681	+				-0.5
3,891,682	-				-1.3
3,891,682	-				-0.5
3,891,682	-				+0.3
3,891,682	-				+0.5
3,891,682	-				-2.4
3,891,682	-				-0.8
3,891,682	-				-1.8
3,891,682	-				-0.4
3,891,791	+				-1.4
3,891,791	+				-1.0
3,891,792	-				+1.3
3,891,792	-				+1.4
3,891,792	-				-0.8
3,891,792	-				-0.7
3,891,828	+				-0.2
3,891,828	+				-0.4
3,891,828	+				-1.3
3,891,828	+				+0.1
3,891,828	+				-0.2
3,891,829	-				-1.2
3,891,829	-				-0.2
3,891,829	-				+2.4
3,891,829	-				-0.9
3,891,829	-				+2.6
3,891,829	-				+0.8
3,891,829	-				+1.2
3,891,829	-				-1.1
3,891,829	-				-0.9
3,891,829	-				+1.2
3,891,829	-				+1.0
3,891,829	-				-1.2
3,891,829	-				-0.8
3,891,829	-				-0.6
3,891,832	+				-0.8
3,891,832	+				-0.7
3,891,833	-				-1.6
3,891,833	-				-0.3
3,891,833	-				+0.8
3,891,893	+		DZA65_RS18090	0.12	-2.1
3,891,893	+		DZA65_RS18090	0.12	-1.4
3,891,893	+		DZA65_RS18090	0.12	-1.5
3,891,893	+		DZA65_RS18090	0.12	+0.2
3,891,893	+		DZA65_RS18090	0.12	-2.4
3,891,893	+		DZA65_RS18090	0.12	+0.0
3,891,894	-		DZA65_RS18090	0.12	+0.1
3,891,894	-		DZA65_RS18090	0.12	-1.1
3,891,894	-		DZA65_RS18090	0.12	-1.2
3,891,894	-		DZA65_RS18090	0.12	-1.8
3,891,894	-		DZA65_RS18090	0.12	-0.6
3,891,897	+		DZA65_RS18090	0.12	-0.0
3,891,897	+		DZA65_RS18090	0.12	-0.4
3,891,898	-		DZA65_RS18090	0.12	+0.5
3,891,898	-		DZA65_RS18090	0.12	-0.5
3,891,898	-		DZA65_RS18090	0.12	+1.8
3,891,898	-		DZA65_RS18090	0.12	-1.5
3,891,958	+		DZA65_RS18090	0.15	-0.2
3,891,959	-		DZA65_RS18090	0.15	+0.8
3,891,963	+		DZA65_RS18090	0.16	-0.5
3,891,963	+		DZA65_RS18090	0.16	-0.4
3,891,964	-		DZA65_RS18090	0.16	-1.4
3,891,964	-		DZA65_RS18090	0.16	-0.8
3,891,964	-		DZA65_RS18090	0.16	+0.8
3,892,066	+		DZA65_RS18090	0.21	-0.5
3,892,066	+		DZA65_RS18090	0.21	+0.9
3,892,242	+		DZA65_RS18090	0.31	-2.1
3,892,242	+		DZA65_RS18090	0.31	-0.5
3,892,243	-		DZA65_RS18090	0.31	-0.6
3,892,243	-		DZA65_RS18090	0.31	-1.8
3,892,274	+		DZA65_RS18090	0.33	+0.6
3,892,274	+		DZA65_RS18090	0.33	-0.0
3,892,274	+		DZA65_RS18090	0.33	-1.2
3,892,274	+		DZA65_RS18090	0.33	-1.0
3,892,275	-		DZA65_RS18090	0.33	-1.7
3,892,275	-		DZA65_RS18090	0.33	-0.5
3,892,275	-		DZA65_RS18090	0.33	-1.2
3,892,275	-		DZA65_RS18090	0.33	+0.3
3,892,275	-		DZA65_RS18090	0.33	-2.2
3,892,314	+		DZA65_RS18090	0.35	-2.4
3,892,315	-		DZA65_RS18090	0.35	-0.7
3,892,315	-		DZA65_RS18090	0.35	-1.4
3,892,315	-		DZA65_RS18090	0.35	-1.9
3,892,315	-		DZA65_RS18090	0.35	-1.5
3,892,390	+		DZA65_RS18090	0.39	-2.1
3,892,416	+		DZA65_RS18090	0.41	+0.8
3,892,417	-		DZA65_RS18090	0.41	-0.1
3,892,424	+		DZA65_RS18090	0.41	-2.3
3,892,425	-		DZA65_RS18090	0.41	-0.5
3,892,482	+		DZA65_RS18090	0.44	-0.9
3,892,638	+		DZA65_RS18090	0.53	-0.8
3,892,639	-		DZA65_RS18090	0.53	+1.5
3,892,639	-		DZA65_RS18090	0.53	-0.2
3,892,668	+		DZA65_RS18090	0.54	-0.9
3,892,669	-		DZA65_RS18090	0.54	-1.2
3,892,760	-		DZA65_RS18090	0.59	-0.3
3,892,760	-		DZA65_RS18090	0.59	-0.8
3,892,765	+		DZA65_RS18090	0.60	-1.5
3,892,765	+		DZA65_RS18090	0.60	+0.8
3,892,765	+		DZA65_RS18090	0.60	-2.0
3,892,765	+		DZA65_RS18090	0.60	+0.1
3,892,765	+		DZA65_RS18090	0.60	-0.6
3,892,765	+		DZA65_RS18090	0.60	-0.0
3,892,766	-		DZA65_RS18090	0.60	+1.1
3,892,766	-		DZA65_RS18090	0.60	-1.0
3,892,767	+		DZA65_RS18090	0.60	-0.7
3,892,768	-		DZA65_RS18090	0.60	-1.5
3,892,768	-		DZA65_RS18090	0.60	-0.9
3,892,768	-		DZA65_RS18090	0.60	-0.2
3,892,780	+		DZA65_RS18090	0.61	-1.3
3,892,781	-		DZA65_RS18090	0.61	-0.4
3,892,781	-		DZA65_RS18090	0.61	-0.2
3,892,920	-		DZA65_RS18090	0.68	-1.5
3,892,920	-		DZA65_RS18090	0.68	-0.2
3,893,011	-				-0.2
3,893,011	-		DZA65_RS18090	0.73	+0.2
3,893,088	+		DZA65_RS18090	0.77	+1.4
3,893,165	+		DZA65_RS18090	0.82	-1.8
3,893,166	-		DZA65_RS18090	0.82	-0.5
3,893,174	+		DZA65_RS18090	0.82	-0.3
3,893,174	+		DZA65_RS18090	0.82	-0.3
3,893,174	+		DZA65_RS18090	0.82	-2.8
3,893,182	-		DZA65_RS18090	0.83	-0.2
3,893,290	+		DZA65_RS18090	0.89	-2.4
3,893,293	+		DZA65_RS18090	0.89	-0.2
3,893,293	+		DZA65_RS18090	0.89	-0.9
3,893,294	-		DZA65_RS18090	0.89	-0.0
3,893,382	+				-1.2
3,893,383	-				-2.0
3,893,550	+				-0.2
3,893,551	-				+1.8
3,893,553	-				+0.4
3,893,569	+				-1.5
3,893,570	-				-2.0
3,893,570	-				+0.7
3,893,570	-				-0.9
3,893,581	+				+0.2
3,893,581	+				-1.2
3,893,582	-				-0.5
3,893,582	-				-0.8
3,893,586	+				+1.3
3,893,587	-				-0.1
3,893,587	-				+0.3
3,893,587	-				-0.5
3,893,587	-				+0.6
3,893,587	-				-0.4
3,893,588	+				-0.8
3,893,588	+				+1.8
3,893,588	+				-0.7
3,893,588	+				-2.1
3,893,588	+				+0.0
3,893,588	+				-0.3
3,893,588	+				+1.0
3,893,589	-				-0.5
3,893,589	-				-0.8
3,893,589	-				-1.1
3,893,589	-				+0.4
3,893,589	-				-0.8
3,893,589	-				+1.2
3,893,589	-				-0.6
3,893,589	-				+0.8
3,893,589	-				+0.4
3,893,589	-				-1.8
3,893,589	-				-0.2
3,893,589	-				-0.4
3,893,589	-				-1.5
3,893,589	-				-1.2
3,893,593	+				-2.4
3,893,594	-				+0.2
3,893,616	-				-0.1
3,893,616	-				-0.7
3,893,675	+				+0.8
3,893,704	+				-2.5
3,893,814	+				-2.5
3,893,814	+				+2.0
3,893,815	-				-2.8
3,893,815	-				-0.0
3,893,912	+				-1.7
3,893,913	-				-0.6
3,894,014	-				+0.7
3,894,038	+				-0.0
3,894,038	+				-1.0
3,894,038	+				+0.3
3,894,038	+				+0.5
3,894,038	+				+0.1
3,894,038	+				-0.9
3,894,038	+				-0.1
3,894,038	+				-2.4
3,894,039	-				+0.3
3,894,039	-				-0.1
3,894,039	-				-0.9
3,894,039	-				-0.5
3,894,039	-				+0.2
3,894,039	-				+1.5
3,894,039	-				-0.8
3,894,039	-				+0.2
3,894,075	+				+0.5
3,894,104	-				-1.5
3,894,104	-				-1.4
3,894,129	+				+0.3
3,894,130	-				-0.2
3,894,130	-				+0.8
3,894,130	-				+0.5
3,894,133	+				-2.4
3,894,185	+		DZA65_RS18095	0.11	-0.0
3,894,185	+		DZA65_RS18095	0.11	-0.0
3,894,186	-		DZA65_RS18095	0.11	+0.8
3,894,186	-		DZA65_RS18095	0.11	-1.9
3,894,187	+		DZA65_RS18095	0.11	-0.3
3,894,188	-		DZA65_RS18095	0.11	-0.2
3,894,188	-		DZA65_RS18095	0.11	+0.2
3,894,188	-		DZA65_RS18095	0.11	+1.8
3,894,188	-		DZA65_RS18095	0.11	+0.6
3,894,188	-		DZA65_RS18095	0.11	-0.6
3,894,212	+		DZA65_RS18095	0.13	+0.5
3,894,220	+		DZA65_RS18095	0.14	-0.6
3,894,224	+		DZA65_RS18095	0.14	-0.2
3,894,224	+		DZA65_RS18095	0.14	-2.0
3,894,225	-		DZA65_RS18095	0.14	-1.1
3,894,225	-		DZA65_RS18095	0.14	+1.0
3,894,232	+		DZA65_RS18095	0.15	+0.1
3,894,232	+		DZA65_RS18095	0.15	+0.2
3,894,233	-		DZA65_RS18095	0.15	+0.1
3,894,233	-		DZA65_RS18095	0.15	-0.1
3,894,290	+		DZA65_RS18095	0.20	+1.8
3,894,292	+		DZA65_RS18095	0.20	-1.5
3,894,308	+		DZA65_RS18095	0.21	-2.0
3,894,333	-		DZA65_RS18095	0.23	-0.7
3,894,351	+		DZA65_RS18095	0.25	+2.4
3,894,351	+		DZA65_RS18095	0.25	-0.4
3,894,352	-		DZA65_RS18095	0.25	-0.2
3,894,355	-		DZA65_RS18095	0.25	-0.7
3,894,355	-		DZA65_RS18095	0.25	-0.2
3,894,356	+		DZA65_RS18095	0.25	-0.2
3,894,357	-		DZA65_RS18095	0.25	-0.1
3,894,357	-		DZA65_RS18095	0.25	+0.1
3,894,417	+		DZA65_RS18095	0.30	+0.1
3,894,418	-		DZA65_RS18095	0.30	+0.8
3,894,420	+		DZA65_RS18095	0.30	-0.0
3,894,420	+		DZA65_RS18095	0.30	+1.3
3,894,421	-		DZA65_RS18095	0.31	+1.1
3,894,425	-		DZA65_RS18095	0.31	-0.1
3,894,425	-		DZA65_RS18095	0.31	+1.4
3,894,434	+		DZA65_RS18095	0.32	-1.2
3,894,474	+		DZA65_RS18095	0.35	+1.1