Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17490

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,767,064	+				-0.2
3,767,064	+				+1.2
3,767,064	+				-0.0
3,767,083	+				-0.2
3,767,084	-				-0.8
3,767,107	+		DZA65_RS22970	0.22	+1.2
3,767,108	-		DZA65_RS22970	0.23	-0.2
3,767,108	-		DZA65_RS22970	0.23	+0.1
3,767,150	-		DZA65_RS22970	0.67	-1.4
3,767,155	+		DZA65_RS22970	0.72	-0.2
3,767,159	+		DZA65_RS22970	0.76	+1.2
3,767,181	+				-2.0
3,767,181	+				+0.1
3,767,181	+				+2.3
3,767,181	+				-0.8
3,767,181	+				+0.8
3,767,181	+				+1.3
3,767,181	+				-1.8
3,767,182	-				+2.2
3,767,182	-				-0.8
3,767,182	-				-0.6
3,767,182	-				+1.2
3,767,192	+				+1.3
3,767,192	+				+1.3
3,767,192	+				+0.5
3,767,192	+				-1.6
3,767,192	+				+2.3
3,767,192	+				-1.2
3,767,192	+				+0.8
3,767,192	+				-0.2
3,767,192	+				+0.4
3,767,193	-				-0.2
3,767,193	-				+0.0
3,767,193	-				+0.7
3,767,193	-				-1.3
3,767,193	-				-0.6
3,767,193	-				+0.8
3,767,193	-				-2.8
3,767,193	-				-0.8
3,767,193	-				+1.2
3,767,193	-				+0.1
3,767,193	-				-1.2
3,767,193	-				-0.8
3,767,210	+				+0.6
3,767,211	-				+0.8
3,767,228	+				+0.4
3,767,232	+				+0.3
3,767,233	-				+4.5
3,767,233	-				-0.3
3,767,233	-				+0.8
3,767,247	+				-2.6
3,767,247	+				+0.2
3,767,247	+				-0.7
3,767,286	-				+0.8
3,767,432	-				-2.4
3,767,435	-				-0.8
3,767,435	-				-0.0
3,767,470	+				+0.2
3,767,481	-				+0.5
3,767,484	+				-0.9
3,767,485	-				+0.0
3,767,489	-				+0.8
3,767,531	-				+0.8
3,767,559	+				+0.6
3,767,560	-				+0.7
3,767,574	+				-0.1
3,767,574	+				+0.8
3,767,574	+				+1.9
3,767,581	+				+0.8
3,767,582	-				+0.3
3,767,597	+				-1.0
3,767,598	-				-2.0
3,767,598	-				+1.1
3,767,614	+				-0.1
3,767,615	-				-2.0
3,767,635	+				+1.0
3,767,636	-				-1.6
3,767,686	-				-0.3
3,767,702	+				-0.9
3,767,702	+				+2.1
3,767,703	-				+0.2
3,767,707	-				-0.8
3,767,712	+				-1.2
3,767,712	+				+2.1
3,767,712	+				+1.1
3,767,713	-				+1.2
3,767,716	+				+0.8
3,767,716	+				+0.1
3,767,734	-				+0.6
3,767,777	+				+0.2
3,767,777	+				+0.2
3,767,778	-				+0.6
3,767,778	-				+0.8
3,767,825	+				+0.6
3,767,832	-				+0.8
3,768,020	+				-0.1
3,768,020	+				+0.9
3,768,020	+				+1.4
3,768,020	+				-1.0
3,768,020	+				+0.8
3,768,021	-				-0.3
3,768,021	-				+1.6
3,768,021	-				+1.2
3,768,021	-				+1.6
3,768,040	+				+0.0
3,768,041	-				-0.5
3,768,182	+		DZA65_RS17490	0.17	-1.2
3,768,272	+		DZA65_RS17490	0.26	+0.0
3,768,384	+		DZA65_RS17490	0.38	-2.2
3,768,385	-		DZA65_RS17490	0.38	-1.2
3,768,385	-		DZA65_RS17490	0.38	+0.3
3,768,410	+		DZA65_RS17490	0.41	-0.9
3,768,470	+		DZA65_RS17490	0.47	-0.7
3,768,470	+		DZA65_RS17490	0.47	+0.3
3,768,471	-		DZA65_RS17490	0.47	-0.5
3,768,471	-		DZA65_RS17490	0.47	-2.4
3,768,563	+		DZA65_RS17490	0.57	+2.0
3,768,563	+		DZA65_RS17490	0.57	-1.2
3,768,564	-		DZA65_RS17490	0.57	+0.4
3,768,569	+		DZA65_RS17490	0.57	-3.0
3,768,616	+		DZA65_RS17490	0.62	-1.8
3,768,629	+		DZA65_RS17490	0.64	-2.4
3,768,629	+				-0.2
3,768,657	-		DZA65_RS17490	0.66	-1.2
3,768,686	+		DZA65_RS17490	0.69	-0.6
3,768,687	-		DZA65_RS17490	0.70	+0.8
3,768,710	+		DZA65_RS17490	0.72	+0.2
3,768,711	-		DZA65_RS17490	0.72	+1.7
3,768,714	-		DZA65_RS17490	0.72	-0.6
3,768,714	-		DZA65_RS17490	0.72	-1.6
3,768,727	+		DZA65_RS17490	0.74	-0.8
3,768,728	-		DZA65_RS17490	0.74	-1.8
3,768,743	+		DZA65_RS17490	0.75	+0.0
3,768,758	+		DZA65_RS17490	0.77	+0.5
3,768,759	-		DZA65_RS17490	0.77	-0.8
3,768,972	+				-0.1
3,769,209	-		DZA65_RS17495	0.11	+0.9
3,769,227	+		DZA65_RS17495	0.12	-0.2
3,769,227	+		DZA65_RS17495	0.12	-1.6
3,769,227	+		DZA65_RS17495	0.12	-0.0
3,769,228	-		DZA65_RS17495	0.12	+0.5
3,769,251	+		DZA65_RS17495	0.14	-0.1
3,769,320	+		DZA65_RS17495	0.18	+0.2
3,769,320	+		DZA65_RS17495	0.18	+0.3
3,769,320	+		DZA65_RS17495	0.18	-0.2
3,769,320	+		DZA65_RS17495	0.18	-1.2
3,769,321	-		DZA65_RS17495	0.18	+0.2
3,769,400	-		DZA65_RS17495	0.23	-1.1
3,769,552	+		DZA65_RS17495	0.33	-1.8
3,769,552	+		DZA65_RS17495	0.33	-1.2
3,769,552	+		DZA65_RS17495	0.33	+0.4
3,769,552	+		DZA65_RS17495	0.33	+0.1
3,769,553	-		DZA65_RS17495	0.34	-1.1
3,769,553	-		DZA65_RS17495	0.34	-1.4
3,769,553	-		DZA65_RS17495	0.34	+1.7
3,769,553	-		DZA65_RS17495	0.34	-0.6
3,769,553	-		DZA65_RS17495	0.34	+0.3
3,769,608	-		DZA65_RS17495	0.37	+0.3
3,769,677	+		DZA65_RS17495	0.42	+0.8
3,769,677	+		DZA65_RS17495	0.42	+0.0
3,769,694	+		DZA65_RS17495	0.43	+0.1
3,769,694	+		DZA65_RS17495	0.43	-0.1
3,769,695	-		DZA65_RS17495	0.43	-0.6
3,769,695	-		DZA65_RS17495	0.43	-1.4
3,769,695	-		DZA65_RS17495	0.43	-0.2
3,769,697	+		DZA65_RS17495	0.43	-0.8
3,769,697	+		DZA65_RS17495	0.43	-0.4
3,769,697	+		DZA65_RS17495	0.43	-1.6
3,769,697	+		DZA65_RS17495	0.43	+0.2
3,769,697	+		DZA65_RS17495	0.43	+0.8
3,769,697	+		DZA65_RS17495	0.43	-1.2
3,769,698	-		DZA65_RS17495	0.43	-1.6
3,769,698	-		DZA65_RS17495	0.43	-0.1
3,769,756	+		DZA65_RS17495	0.47	-0.8
3,769,756	+				+0.3
3,769,756	+		DZA65_RS17495	0.47	+0.2
3,769,756	+		DZA65_RS17495	0.47	-0.1
3,769,757	-		DZA65_RS17495	0.47	-0.7
3,769,757	-		DZA65_RS17495	0.47	-1.2
3,769,757	-		DZA65_RS17495	0.47	+0.8
3,769,878	-		DZA65_RS17495	0.55	+0.1
3,769,936	+		DZA65_RS17495	0.59	+0.2
3,769,936	+		DZA65_RS17495	0.59	+0.5
3,769,936	+		DZA65_RS17495	0.59	+0.2
3,769,936	+		DZA65_RS17495	0.59	+1.2
3,769,937	-		DZA65_RS17495	0.59	+0.8
3,769,937	-		DZA65_RS17495	0.59	-0.6
3,769,937	-		DZA65_RS17495	0.59	-0.3
3,769,937	-		DZA65_RS17495	0.59	-0.9
3,769,937	-		DZA65_RS17495	0.59	-1.1