Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17475

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,762,582	+		DZA65_RS17470	0.10	+0.8
3,762,582	+		DZA65_RS17470	0.10	+0.3
3,762,607	+		DZA65_RS17470	0.14	+0.2
3,762,607	+		DZA65_RS17470	0.14	+0.2
3,762,607	+		DZA65_RS17470	0.14	-0.1
3,762,607	+		DZA65_RS17470	0.14	-0.6
3,762,607	+		DZA65_RS17470	0.14	-1.5
3,762,607	+		DZA65_RS17470	0.14	-1.1
3,762,607	+		DZA65_RS17470	0.14	-1.4
3,762,607	+		DZA65_RS17470	0.14	-1.4
3,762,607	+		DZA65_RS17470	0.14	-0.0
3,762,607	+		DZA65_RS17470	0.14	+0.6
3,762,608	-		DZA65_RS17470	0.14	+0.0
3,762,608	-		DZA65_RS17470	0.14	+0.4
3,762,608	-		DZA65_RS17470	0.14	+0.4
3,762,608	-		DZA65_RS17470	0.14	-0.7
3,762,608	-		DZA65_RS17470	0.14	-0.6
3,762,644	-		DZA65_RS17470	0.20	+0.7
3,762,718	+		DZA65_RS17470	0.31	-0.6
3,762,718	+		DZA65_RS17470	0.31	-1.2
3,762,718	+		DZA65_RS17470	0.31	-0.1
3,762,719	-		DZA65_RS17470	0.31	+1.3
3,762,719	-		DZA65_RS17470	0.31	-0.7
3,762,721	+		DZA65_RS17470	0.31	-2.7
3,762,721	+		DZA65_RS17470	0.31	-1.0
3,762,721	+		DZA65_RS17470	0.31	-0.3
3,762,722	-		DZA65_RS17470	0.31	-0.1
3,762,824	+		DZA65_RS17470	0.47	+1.5
3,762,883	+		DZA65_RS17470	0.56	+0.5
3,762,883	+		DZA65_RS17470	0.56	-0.6
3,762,883	+		DZA65_RS17470	0.56	+1.0
3,762,883	+		DZA65_RS17470	0.56	-0.8
3,762,884	-		DZA65_RS17470	0.56	-0.6
3,762,884	-		DZA65_RS17470	0.56	-2.6
3,762,884	-		DZA65_RS17470	0.56	-1.2
3,762,884	-		DZA65_RS17470	0.56	+0.6
3,762,884	-		DZA65_RS17470	0.56	+1.0
3,762,884	-		DZA65_RS17470	0.56	-1.0
3,762,886	-		DZA65_RS17470	0.57	-1.3
3,762,890	+		DZA65_RS17470	0.57	-0.1
3,762,890	+		DZA65_RS17470	0.57	+0.2
3,762,890	+		DZA65_RS17470	0.57	-2.1
3,762,890	+		DZA65_RS17470	0.57	-0.3
3,762,890	+		DZA65_RS17470	0.57	-0.4
3,762,890	+		DZA65_RS17470	0.57	+0.7
3,762,890	+		DZA65_RS17470	0.57	-0.1
3,762,890	+		DZA65_RS17470	0.57	-1.7
3,762,890	+		DZA65_RS17470	0.57	-0.6
3,762,890	+		DZA65_RS17470	0.57	+1.3
3,762,890	+		DZA65_RS17470	0.57	-1.6
3,762,890	+		DZA65_RS17470	0.57	+0.2
3,762,891	-		DZA65_RS17470	0.57	-1.1
3,762,891	-		DZA65_RS17470	0.57	-0.5
3,762,891	-		DZA65_RS17470	0.57	+0.1
3,762,891	-		DZA65_RS17470	0.57	-1.3
3,762,891	-		DZA65_RS17470	0.57	-1.5
3,762,891	-		DZA65_RS17470	0.57	-0.5
3,762,891	-		DZA65_RS17470	0.57	-1.0
3,762,891	-		DZA65_RS17470	0.57	-0.3
3,762,891	-		DZA65_RS17470	0.57	-0.8
3,762,891	-		DZA65_RS17470	0.57	-2.8
3,762,891	-		DZA65_RS17470	0.57	-0.3
3,762,891	-		DZA65_RS17470	0.57	-0.6
3,762,894	+		DZA65_RS17470	0.58	-0.8
3,762,895	-		DZA65_RS17470	0.58	-0.5
3,762,895	-		DZA65_RS17470	0.58	-0.3
3,762,895	-		DZA65_RS17470	0.58	-0.3
3,762,967	+		DZA65_RS17470	0.69	-1.1
3,762,967	+		DZA65_RS17470	0.69	+0.4
3,762,967	+		DZA65_RS17470	0.69	+0.1
3,762,967	+		DZA65_RS17470	0.69	-2.3
3,762,967	+		DZA65_RS17470	0.69	+2.0
3,762,967	+		DZA65_RS17470	0.69	-0.1
3,762,967	+		DZA65_RS17470	0.69	-2.1
3,762,967	+		DZA65_RS17470	0.69	+0.3
3,762,967	+		DZA65_RS17470	0.69	+0.1
3,762,968	-		DZA65_RS17470	0.69	+0.5
3,762,968	-		DZA65_RS17470	0.69	+1.6
3,762,968	-		DZA65_RS17470	0.69	-1.0
3,762,968	-		DZA65_RS17470	0.69	+0.7
3,762,968	-		DZA65_RS17470	0.69	-0.3
3,762,968	-		DZA65_RS17470	0.69	+0.7
3,763,038	+		DZA65_RS17470	0.80	-1.7
3,763,038	+		DZA65_RS17470	0.80	-1.3
3,763,038	+		DZA65_RS17470	0.80	-1.3
3,763,038	+		DZA65_RS17470	0.80	-0.8
3,763,038	+		DZA65_RS17470	0.80	-2.3
3,763,039	-		DZA65_RS17470	0.80	+1.1
3,763,039	-		DZA65_RS17470	0.80	-0.4
3,763,039	-		DZA65_RS17470	0.80	-1.4
3,763,039	-		DZA65_RS17470	0.80	-0.0
3,763,039	-		DZA65_RS17470	0.80	-0.0
3,763,039	-		DZA65_RS17470	0.80	-1.1
3,763,108	+				-0.3
3,763,108	+				+0.0
3,763,108	+				-1.1
3,763,108	+				-0.6
3,763,108	+				+1.1
3,763,108	+				-0.9
3,763,108	+				+1.4
3,763,108	+				+1.1
3,763,109	-				+0.4
3,763,109	-				+1.8
3,763,109	-				-0.3
3,763,109	-				-0.0
3,763,109	-				+0.7
3,763,162	+				+2.3
3,763,162	+				-0.7
3,763,162	+				-0.1
3,763,162	+				-0.3
3,763,162	+				-0.3
3,763,163	-				+0.7
3,763,163	-				+1.3
3,763,163	-				+1.0
3,763,163	-				+0.7
3,763,163	-				+0.4
3,763,183	+				-0.8
3,763,184	-				-0.1
3,763,184	-				-0.8
3,763,240	+				-1.0
3,763,240	+				-1.3
3,763,240	+				-1.1
3,763,240	+				+1.2
3,763,241	-				-1.8
3,763,241	-				-0.1
3,763,241	-				+0.7
3,763,241	-				-0.8
3,763,241	-				+0.2
3,763,241	-				-0.7
3,763,341	+				+1.3
3,763,342	-				-0.6
3,763,351	+				+1.0
3,763,351	+				-1.8
3,763,365	+				-0.7
3,763,366	-				+1.0
3,763,366	-				+1.3
3,763,366	-				-2.6
3,763,374	+				-0.2
3,763,374	+				-0.0
3,763,378	+				-1.4
3,763,379	-				-0.2
3,763,388	-				-1.4
3,763,423	+				+1.4
3,763,423	+				-0.8
3,763,423	+				-1.1
3,763,424	-				+0.4
3,763,437	+				+0.9
3,763,437	+				-1.2
3,763,440	+				-0.1
3,763,441	-				-2.2
3,763,441	-				+0.3
3,763,442	+				+1.8
3,763,443	-				+0.1
3,763,443	-				+0.3
3,763,487	+				+0.1
3,763,487	+				+0.0
3,763,487	+				+1.3
3,763,488	-				-0.1
3,763,620	+		DZA65_RS17475	0.13	+0.7
3,763,620	+		DZA65_RS17475	0.13	-1.6
3,763,620	+		DZA65_RS17475	0.13	+1.9
3,763,620	+		DZA65_RS17475	0.13	-1.4
3,763,620	+		DZA65_RS17475	0.13	+0.0
3,763,620	+		DZA65_RS17475	0.13	+0.2
3,763,620	+		DZA65_RS17475	0.13	-0.2
3,763,620	+		DZA65_RS17475	0.13	-0.8
3,763,620	+		DZA65_RS17475	0.13	-1.6
3,763,621	-		DZA65_RS17475	0.13	+0.9
3,763,621	-		DZA65_RS17475	0.13	+0.2
3,763,621	-		DZA65_RS17475	0.13	-1.2
3,763,622	+		DZA65_RS17475	0.13	-1.6
3,763,622	+		DZA65_RS17475	0.13	-1.8
3,763,622	+		DZA65_RS17475	0.13	-1.6
3,763,623	-		DZA65_RS17475	0.14	-0.0
3,763,623	-		DZA65_RS17475	0.14	+1.3
3,763,623	-		DZA65_RS17475	0.14	+0.8
3,763,623	-		DZA65_RS17475	0.14	-1.2
3,763,689	-		DZA65_RS17475	0.22	-0.8
3,763,811	+		DZA65_RS17475	0.38	-1.8
3,763,811	+		DZA65_RS17475	0.38	+0.5
3,763,811	+		DZA65_RS17475	0.38	-0.6
3,763,811	+		DZA65_RS17475	0.38	+1.9
3,763,811	+		DZA65_RS17475	0.38	-0.5
3,763,811	+		DZA65_RS17475	0.38	+0.3
3,763,811	+		DZA65_RS17475	0.38	-1.1
3,763,811	+		DZA65_RS17475	0.38	-0.5
3,763,812	-		DZA65_RS17475	0.38	-2.2
3,763,812	-		DZA65_RS17475	0.38	+0.9
3,763,812	-		DZA65_RS17475	0.38	-2.7
3,763,839	+		DZA65_RS17475	0.41	-1.5
3,763,840	-		DZA65_RS17475	0.42	-2.2
3,763,840	-		DZA65_RS17475	0.42	-0.2
3,763,840	-		DZA65_RS17475	0.42	-1.6
3,763,840	-		DZA65_RS17475	0.42	+0.4
3,763,840	-		DZA65_RS17475	0.42	-1.6
3,763,852	+		DZA65_RS17475	0.43	-1.4
3,763,852	+		DZA65_RS17475	0.43	-0.5
3,763,852	+		DZA65_RS17475	0.43	-0.6
3,763,852	+		DZA65_RS17475	0.43	-0.4
3,763,895	+		DZA65_RS17475	0.49	-0.2
3,763,921	+		DZA65_RS17475	0.52	-0.8
3,763,921	+		DZA65_RS17475	0.52	-0.2
3,763,921	+		DZA65_RS17475	0.52	+0.8
3,763,922	-		DZA65_RS17475	0.52	+0.2
3,763,922	-		DZA65_RS17475	0.52	-0.7
3,763,922	-		DZA65_RS17475	0.52	-0.5
3,763,974	+		DZA65_RS17475	0.59	-2.2
3,763,974	+		DZA65_RS17475	0.59	+1.6
3,763,974	+		DZA65_RS17475	0.59	-0.2
3,764,058	+		DZA65_RS17475	0.70	-0.9
3,764,059	-		DZA65_RS17475	0.70	-0.6
3,764,241	+				+1.1
3,764,241	+				-0.7
3,764,242	-				+1.0
3,764,242	-				+0.4
3,764,242	-				-1.8
3,764,260	+				-1.8
3,764,260	+				-1.6
3,764,261	-				-0.1
3,764,281	+				-1.6
3,764,281	+				-1.2
3,764,281	+				-0.6
3,764,310	-				-1.4
3,764,310	-				-1.8
3,764,310	-				+0.3
3,764,330	+				+0.3
3,764,330	+				-0.8
3,764,399	-				+0.2
3,764,487	+				-1.6
3,764,487	+				-0.8
3,764,496	+				-0.1
3,764,496	+				-0.5
3,764,496	+				+0.6
3,764,497	-				-2.6
3,764,502	+				-2.1
3,764,502	+				-1.8
3,764,502	+				+0.4
3,764,503	-				-0.8
3,764,503	-				-1.6
3,764,551	-				-2.1
3,764,555	+				-0.6
3,764,555	+				-0.7
3,764,555	+				+0.4
3,764,555	+				+0.5
3,764,555	+				+1.1
3,764,555	+				+0.8
3,764,555	+				-0.1
3,764,556	-				-1.2
3,764,556	-				-1.0
3,764,621	+				+0.4
3,764,622	-				+0.8
3,764,656	+				-0.2
3,764,656	+				-0.8
3,764,656	+				-1.7
3,764,657	-				+0.8
3,764,657	-				+0.8
3,764,657	-				-1.2
3,764,687	+				+0.0
3,764,688	-				-0.2
3,764,720	+				-1.2
3,764,720	+				+0.1
3,764,721	-				-0.6
3,764,721	-				-0.4
3,764,722	+				-1.1
3,764,778	-				-1.0
3,764,778	-				+0.8
3,764,778	-				-0.8
3,764,803	-				+0.0
3,764,803	-				+0.3
3,764,820	+				+1.8
3,764,822	+				-2.7
3,764,822	+				+0.3
3,764,822	+				+0.8
3,764,822	+				-0.7
3,764,822	+				-1.1
3,764,822	+				-0.8
3,764,822	+				+1.2
3,764,822	+				-0.3
3,764,822	+				+0.4
3,764,822	+				-0.8
3,764,822	+				+0.3
3,764,822	+				-0.4
3,764,822	+				-1.4
3,764,822	+				+0.1
3,764,822	+				-0.4
3,764,822	+				-0.7
3,764,822	+				-0.8
3,764,823	-				-0.1
3,764,823	-				-0.7
3,764,823	-				+0.8
3,764,823	-				-2.2
3,764,823	-				-0.2
3,764,823	-				+0.0
3,764,823	-				-1.3
3,764,823	-				-0.7
3,764,823	-				+0.2
3,764,823	-				+0.1
3,764,823	-				-1.8
3,765,027	+		DZA65_RS17480	0.14	-0.7
3,765,028	-		DZA65_RS17480	0.15	+0.3
3,765,094	-		DZA65_RS17480	0.19	-1.8
3,765,167	+		DZA65_RS17480	0.24	-2.2
3,765,168	-		DZA65_RS17480	0.24	+2.8
3,765,168	-		DZA65_RS17480	0.24	+1.2
3,765,171	-		DZA65_RS17480	0.24	-0.0
3,765,229	+		DZA65_RS17480	0.28	-1.1
3,765,229	+		DZA65_RS17480	0.28	+0.9
3,765,230	-		DZA65_RS17480	0.28	-0.5
3,765,230	-				-0.8
3,765,230	-		DZA65_RS17480	0.28	+0.1
3,765,230	-		DZA65_RS17480	0.28	-1.6
3,765,231	+		DZA65_RS17480	0.28	-0.8