Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16585

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,579,451	+		DZA65_RS16570	0.41	+1.3
3,579,575	+		DZA65_RS16570	0.54	+0.1
3,579,576	-		DZA65_RS16570	0.55	-0.1
3,579,576	-		DZA65_RS16570	0.55	+0.3
3,579,576	-		DZA65_RS16570	0.55	-0.5
3,579,586	+		DZA65_RS16570	0.56	-0.9
3,579,633	-		DZA65_RS16570	0.61	-0.6
3,579,633	-		DZA65_RS16570	0.61	-0.6
3,579,682	+		DZA65_RS16570	0.66	-0.6
3,579,802	+		DZA65_RS16570	0.79	+0.9
3,579,802	+		DZA65_RS16570	0.79	+0.3
3,579,802	+		DZA65_RS16570	0.79	+0.9
3,579,802	+		DZA65_RS16570	0.79	-0.9
3,579,802	+		DZA65_RS16570	0.79	-0.0
3,579,802	+		DZA65_RS16570	0.79	+1.3
3,579,802	+		DZA65_RS16570	0.79	+0.1
3,579,802	+		DZA65_RS16570	0.79	-2.1
3,579,802	+		DZA65_RS16570	0.79	+0.4
3,579,802	+		DZA65_RS16570	0.79	+1.0
3,579,802	+		DZA65_RS16570	0.79	+1.4
3,579,802	+		DZA65_RS16570	0.79	-1.5
3,579,802	+		DZA65_RS16570	0.79	-0.3
3,579,802	+		DZA65_RS16570	0.79	+0.7
3,579,802	+		DZA65_RS16570	0.79	+0.3
3,579,802	+		DZA65_RS16570	0.79	-0.0
3,579,802	+		DZA65_RS16570	0.79	-1.3
3,579,802	+		DZA65_RS16570	0.79	+0.7
3,579,802	+		DZA65_RS16570	0.79	-3.1
3,579,802	+		DZA65_RS16570	0.79	-0.7
3,579,802	+		DZA65_RS16570	0.79	-0.0
3,579,802	+		DZA65_RS16570	0.79	-1.3
3,579,802	+		DZA65_RS16570	0.79	-0.5
3,579,802	+		DZA65_RS16570	0.79	-1.6
3,579,803	-		DZA65_RS16570	0.79	+0.3
3,579,803	-		DZA65_RS16570	0.79	+0.0
3,579,803	-		DZA65_RS16570	0.79	-0.1
3,579,803	-		DZA65_RS16570	0.79	-0.6
3,579,803	-		DZA65_RS16570	0.79	+0.4
3,579,803	-		DZA65_RS16570	0.79	-1.9
3,579,803	-		DZA65_RS16570	0.79	-0.2
3,579,803	-		DZA65_RS16570	0.79	-0.6
3,579,803	-		DZA65_RS16570	0.79	+1.1
3,579,803	-		DZA65_RS16570	0.79	+0.9
3,579,803	-		DZA65_RS16570	0.79	+1.5
3,579,803	-		DZA65_RS16570	0.79	-0.7
3,579,803	-		DZA65_RS16570	0.79	-1.0
3,579,803	-		DZA65_RS16570	0.79	-1.8
3,579,803	-		DZA65_RS16570	0.79	-1.1
3,579,803	-		DZA65_RS16570	0.79	-0.3
3,579,803	-		DZA65_RS16570	0.79	+1.3
3,579,803	-		DZA65_RS16570	0.79	+0.7
3,579,803	-		DZA65_RS16570	0.79	+0.9
3,579,803	-		DZA65_RS16570	0.79	+1.3
3,579,803	-		DZA65_RS16570	0.79	-2.2
3,579,803	-		DZA65_RS16570	0.79	+2.2
3,579,803	-		DZA65_RS16570	0.79	+1.2
3,579,803	-		DZA65_RS16570	0.79	-0.6
3,579,803	-		DZA65_RS16570	0.79	-0.3
3,579,803	-		DZA65_RS16570	0.79	-0.5
3,579,803	-		DZA65_RS16570	0.79	+0.3
3,579,803	-		DZA65_RS16570	0.79	-1.3
3,579,803	-		DZA65_RS16570	0.79	-0.5
3,579,989	+				+0.7
3,579,989	+				-0.2
3,579,989	+				-1.9
3,579,989	+				+0.2
3,579,989	+				+0.3
3,579,989	+				+0.8
3,579,989	+				+0.5
3,579,989	+				-0.1
3,579,989	+				-0.2
3,579,990	-				-1.6
3,579,990	-				+0.4
3,579,990	-				+0.6
3,579,990	-				-2.9
3,579,990	-				+0.3
3,579,990	-				-1.8
3,579,990	-				+1.4
3,579,990	-				-0.0
3,579,990	-				+0.7
3,579,990	-				+0.8
3,579,990	-				-1.2
3,579,990	-				+0.7
3,579,992	+				+0.8
3,579,992	+				+0.3
3,579,992	+				-0.1
3,579,992	+				+2.0
3,580,023	+				-0.9
3,580,023	+				+0.1
3,580,024	-				+1.7
3,580,024	-				-1.1
3,580,024	-				-0.2
3,580,024	-				+1.2
3,580,032	+				+1.7
3,580,032	+				+0.4
3,580,032	+				+0.7
3,580,032	+				+0.7
3,580,032	+				-0.9
3,580,032	+				-0.1
3,580,032	+				-0.1
3,580,032	+				+0.7
3,580,032	+				-0.3
3,580,032	+				-1.2
3,580,032	+				+0.4
3,580,033	-				+2.3
3,580,033	-				-0.6
3,580,033	-				+0.1
3,580,033	-				+0.3
3,580,033	-				+0.3
3,580,033	-				+1.1
3,580,033	-				+1.2
3,580,033	-				+0.3
3,580,033	-				+1.2
3,580,036	+				-1.1
3,580,036	+				-1.0
3,580,036	+				+0.3
3,580,036	+				-0.6
3,580,036	+				-1.9
3,580,036	+				+1.0
3,580,036	+				+0.9
3,580,036	+				-1.9
3,580,036	+				+0.5
3,580,036	+				+0.8
3,580,036	+				+0.3
3,580,037	-				+2.7
3,580,037	-				-0.1
3,580,037	-				+1.3
3,580,037	-				+2.0
3,580,037	-				-0.8
3,580,037	-				+1.3
3,580,037	-				-0.6
3,580,065	+		DZA65_RS16575	0.11	-1.1
3,580,065	+		DZA65_RS16575	0.11	-2.3
3,580,066	-		DZA65_RS16575	0.11	+1.8
3,580,066	-		DZA65_RS16575	0.11	+1.5
3,580,066	-		DZA65_RS16575	0.11	-0.3
3,580,078	-		DZA65_RS16575	0.16	+0.7
3,580,078	-		DZA65_RS16575	0.16	+1.1
3,580,078	-		DZA65_RS16575	0.16	-2.1
3,580,078	-		DZA65_RS16575	0.16	-0.8
3,580,144	+		DZA65_RS16575	0.41	-0.9
3,580,145	-		DZA65_RS16575	0.41	-1.1
3,580,145	-		DZA65_RS16575	0.41	+3.8
3,580,258	-		DZA65_RS16575	0.85	+0.3
3,580,258	-		DZA65_RS16575	0.85	-2.3
3,580,269	+		DZA65_RS16575	0.89	-0.6
3,580,270	-		DZA65_RS16575	0.89	-1.2
3,580,270	-		DZA65_RS16575	0.89	-0.5
3,580,293	+				+2.1
3,580,293	+				+0.7
3,580,294	-				-0.3
3,580,294	-				-1.3
3,580,294	-				-0.1
3,580,294	-				-0.5
3,580,322	+		DZA65_RS16580	0.18	-0.2
3,580,322	+		DZA65_RS16580	0.18	-0.3
3,580,331	+		DZA65_RS16580	0.23	-1.1
3,580,331	+		DZA65_RS16580	0.23	+0.3
3,580,331	+		DZA65_RS16580	0.23	-1.6
3,580,331	+		DZA65_RS16580	0.23	-0.5
3,580,331	+		DZA65_RS16580	0.23	+0.4
3,580,331	+		DZA65_RS16580	0.23	-0.6
3,580,331	+		DZA65_RS16580	0.23	+0.7
3,580,332	-		DZA65_RS16580	0.24	+0.5
3,580,332	-		DZA65_RS16580	0.24	-1.3
3,580,332	-		DZA65_RS16580	0.24	-0.1
3,580,368	+		DZA65_RS16580	0.47	-0.7
3,580,369	-		DZA65_RS16580	0.47	-1.6
3,580,369	-		DZA65_RS16580	0.47	-1.1
3,580,369	-		DZA65_RS16580	0.47	+0.8
3,580,386	+		DZA65_RS16580	0.58	-0.3
3,580,415	+		DZA65_RS16580	0.76	-0.5
3,580,415	+		DZA65_RS16580	0.76	+0.3
3,580,434	+		DZA65_RS16580	0.88	-0.7
3,580,434	+		DZA65_RS16580	0.88	+0.8
3,580,434	+		DZA65_RS16580	0.88	-0.0
3,580,435	-		DZA65_RS16580	0.89	+0.8
3,580,435	-		DZA65_RS16580	0.89	+0.5
3,580,435	-		DZA65_RS16580	0.89	+0.5
3,580,435	-		DZA65_RS16580	0.89	-0.3
3,580,435	-		DZA65_RS16580	0.89	-0.5
3,580,435	-		DZA65_RS16580	0.89	+0.7
3,580,435	-		DZA65_RS16580	0.89	-1.6
3,580,532	+		DZA65_RS16585	0.12	+0.3
3,580,532	+		DZA65_RS16585	0.12	+0.0
3,580,533	-		DZA65_RS16585	0.13	-0.1
3,580,575	-		DZA65_RS16585	0.19	-0.2
3,580,620	-		DZA65_RS16585	0.26	+0.2
3,580,646	+		DZA65_RS16585	0.29	+1.3
3,580,706	+		DZA65_RS16585	0.38	+0.4
3,580,706	+		DZA65_RS16585	0.38	-0.6
3,580,706	+		DZA65_RS16585	0.38	+0.1
3,580,707	-		DZA65_RS16585	0.39	-2.0
3,580,707	-		DZA65_RS16585	0.39	-0.9
3,580,710	+		DZA65_RS16585	0.39	+0.7
3,580,710	+		DZA65_RS16585	0.39	-0.8
3,580,710	+		DZA65_RS16585	0.39	+0.3
3,580,710	+		DZA65_RS16585	0.39	-2.5
3,580,710	+		DZA65_RS16585	0.39	-2.1
3,580,710	+		DZA65_RS16585	0.39	+0.4
3,580,710	+		DZA65_RS16585	0.39	-2.1
3,580,710	+		DZA65_RS16585	0.39	-2.5
3,580,710	+		DZA65_RS16585	0.39	-0.9
3,580,711	-		DZA65_RS16585	0.39	+0.9
3,580,711	-		DZA65_RS16585	0.39	+0.6
3,580,734	+		DZA65_RS16585	0.43	+0.7
3,580,734	+		DZA65_RS16585	0.43	-0.7
3,580,735	-		DZA65_RS16585	0.43	-2.6
3,580,752	+		DZA65_RS16585	0.45	+1.1
3,580,898	+		DZA65_RS16585	0.67	-0.5
3,580,928	+		DZA65_RS16585	0.72	-1.6
3,580,928	+		DZA65_RS16585	0.72	-0.5
3,580,929	-		DZA65_RS16585	0.72	+0.0
3,580,929	-		DZA65_RS16585	0.72	-1.9
3,581,040	+		DZA65_RS16585	0.88	-0.6
3,581,041	-		DZA65_RS16585	0.88	+0.2
3,581,041	-		DZA65_RS16585	0.88	-0.4
3,581,091	-				+2.0
3,581,096	+				-0.1
3,581,096	+				+0.2
3,581,096	+				+0.1
3,581,096	+				-0.3
3,581,096	+				-0.8
3,581,096	+				+0.3
3,581,096	+				-1.0
3,581,097	-				-0.2
3,581,097	-				+0.5
3,581,097	-				-0.1
3,581,097	-				-1.0
3,581,097	-				+0.9
3,581,097	-				-1.6
3,581,098	+				-2.3
3,581,099	-				-2.0
3,581,099	-				-2.5
3,581,110	+				-1.0
3,581,110	+				-2.3
3,581,110	+				-0.5
3,581,111	-				+0.0
3,581,111	-				-2.6
3,581,111	-				+0.4
3,581,111	-				-1.4
3,581,111	-				-0.3
3,581,111	-				+0.0
3,581,126	+				+0.3
3,581,126	+				-1.4
3,581,127	-				-0.1
3,581,127	-				+0.1
3,581,128	+				-1.3
3,581,129	-				-1.2
3,581,138	+				-1.2
3,581,139	-				-1.6
3,581,139	-				-1.1
3,581,168	-				+0.2
3,581,205	-		DZA65_RS16590	0.15	-0.1
3,581,205	-		DZA65_RS16590	0.15	+0.3
3,581,205	-		DZA65_RS16590	0.15	-1.3
3,581,227	+		DZA65_RS16590	0.19	+0.7
3,581,227	+				+0.3
3,581,227	+		DZA65_RS16590	0.19	+1.3
3,581,227	+		DZA65_RS16590	0.19	+0.2
3,581,227	+		DZA65_RS16590	0.19	-1.3
3,581,227	+		DZA65_RS16590	0.19	+1.3
3,581,227	+		DZA65_RS16590	0.19	-0.1
3,581,228	-		DZA65_RS16590	0.19	+2.2
3,581,228	-		DZA65_RS16590	0.19	-1.9
3,581,228	-		DZA65_RS16590	0.19	+0.7
3,581,228	-		DZA65_RS16590	0.19	-0.2
3,581,271	+		DZA65_RS16590	0.26	-0.3
3,581,271	+		DZA65_RS16590	0.26	+0.7
3,581,271	+		DZA65_RS16590	0.26	+0.7
3,581,272	-		DZA65_RS16590	0.26	-0.9
3,581,272	-		DZA65_RS16590	0.26	+1.4
3,581,371	+		DZA65_RS16590	0.43	+3.1
3,581,371	+		DZA65_RS16590	0.43	+0.9
3,581,371	+		DZA65_RS16590	0.43	+2.3
3,581,372	-		DZA65_RS16590	0.43	+0.9
3,581,372	-		DZA65_RS16590	0.43	+2.8
3,581,372	-		DZA65_RS16590	0.43	+0.9
3,581,372	-		DZA65_RS16590	0.43	+1.5
3,581,372	-		DZA65_RS16590	0.43	-1.5
3,581,372	-		DZA65_RS16590	0.43	+3.1
3,581,372	-		DZA65_RS16590	0.43	-0.7
3,581,493	+		DZA65_RS16590	0.63	+1.3
3,581,542	+		DZA65_RS16590	0.72	+0.9
3,581,542	+		DZA65_RS16590	0.72	-1.9
3,581,542	+		DZA65_RS16590	0.72	-0.0
3,581,542	+		DZA65_RS16590	0.72	-2.6
3,581,542	+		DZA65_RS16590	0.72	+0.3
3,581,543	-		DZA65_RS16590	0.72	+0.7
3,581,543	-		DZA65_RS16590	0.72	-1.6
3,581,543	-		DZA65_RS16590	0.72	+0.7
3,581,543	-		DZA65_RS16590	0.72	-0.7
3,581,543	-		DZA65_RS16590	0.72	-0.9
3,581,543	-		DZA65_RS16590	0.72	-1.9
3,581,543	-		DZA65_RS16590	0.72	-0.7
3,581,589	+		DZA65_RS16590	0.80	-1.3
3,581,589	+		DZA65_RS16590	0.80	-0.6
3,581,589	+		DZA65_RS16590	0.80	-0.0
3,581,590	-		DZA65_RS16590	0.80	-0.0
3,581,590	-		DZA65_RS16590	0.80	-0.7
3,581,628	+		DZA65_RS16590	0.86	-0.4
3,581,628	+		DZA65_RS16590	0.86	+1.2
3,581,628	+		DZA65_RS16590	0.86	-2.1
3,581,629	-		DZA65_RS16590	0.86	+0.6
3,581,629	-		DZA65_RS16590	0.86	-0.3
3,581,636	-		DZA65_RS16590	0.87	+0.9
3,581,693	-				-0.2
3,581,693	-				+2.7
3,581,718	-				+1.5
3,581,725	+				-0.3
3,581,726	-				+0.4
3,581,844	+		DZA65_RS16595	0.67	-0.5
3,581,844	+		DZA65_RS16595	0.67	+1.3
3,581,845	-		DZA65_RS16595	0.68	-0.3
3,581,845	-		DZA65_RS16595	0.68	-2.5
3,581,845	-		DZA65_RS16595	0.68	+0.3
3,581,865	+		DZA65_RS16595	0.77	+0.0
3,581,865	+		DZA65_RS16595	0.77	+0.7
3,581,865	+		DZA65_RS16595	0.77	+1.5
3,581,865	+		DZA65_RS16595	0.77	-1.2
3,581,865	+		DZA65_RS16595	0.77	+0.1
3,581,866	-		DZA65_RS16595	0.78	+1.1
3,581,866	-		DZA65_RS16595	0.78	-2.1
3,581,866	-		DZA65_RS16595	0.78	-0.1
3,581,866	-		DZA65_RS16595	0.78	+0.1
3,581,866	-				+0.1
3,581,866	-		DZA65_RS16595	0.78	-0.5
3,581,866	-		DZA65_RS16595	0.78	-1.6
3,581,866	-		DZA65_RS16595	0.78	-0.3
3,581,866	-		DZA65_RS16595	0.78	+0.6
3,581,895	+				-1.3
3,581,895	+				+0.3
3,581,895	+				-2.3
3,581,895	+				+2.8
3,581,896	-				-1.5
3,581,896	-				-1.1
3,581,896	-				+0.6
3,581,896	-				-0.6
3,581,896	-				-0.9
3,581,902	-				-1.5
3,581,902	-				+1.3
3,581,974	-				-0.4
3,581,974	-				+0.1
3,582,004	+				-1.5
3,582,004	+				-2.1
3,582,004	+				-2.1
3,582,004	+				-2.1
3,582,004	+				+1.3
3,582,004	+				-0.8
3,582,004	+				-0.5
3,582,004	+				-0.7
3,582,005	-				+0.2
3,582,005	-				-0.1
3,582,005	-				+0.3
3,582,005	-				-1.2
3,582,005	-				-1.5
3,582,005	-				+1.0
3,582,005	-				-0.7
3,582,027	+				+1.5
3,582,027	+				+0.7
3,582,027	+				+0.9
3,582,027	+				+0.8
3,582,027	+				+0.9
3,582,027	+				+0.3
3,582,027	+				-0.3
3,582,028	-				-0.7
3,582,028	-				-0.1
3,582,028	-				-0.3
3,582,028	-				-0.9
3,582,028	-				+1.1
3,582,028	-				-0.3
3,582,028	-				-0.7
3,582,028	-				+0.3
3,582,046	-		DZA65_RS16600	0.10	-0.3
3,582,060	+		DZA65_RS16600	0.12	+0.3
3,582,060	+		DZA65_RS16600	0.12	-0.5
3,582,061	-		DZA65_RS16600	0.12	-1.6
3,582,061	-		DZA65_RS16600	0.12	-1.3