Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15735

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,415,838	-				-0.2
3,415,887	+				-0.6
3,415,955	+				-2.2
3,415,969	-				-0.5
3,416,023	+				+0.2
3,416,023	+				+1.8
3,416,024	-				-3.1
3,416,024	-				-0.1
3,416,024	-				-1.0
3,416,046	+				+1.0
3,416,046	+				+0.7
3,416,046	+				+1.2
3,416,046	+				-1.4
3,416,046	+				+1.3
3,416,047	-				-0.7
3,416,047	-				+0.6
3,416,047	-				-0.6
3,416,047	-				+1.2
3,416,048	+				-0.2
3,416,048	+				-1.0
3,416,048	+				+0.3
3,416,048	+				-0.4
3,416,048	+				+1.6
3,416,048	+				+0.6
3,416,049	-				+2.4
3,416,049	-				-3.0
3,416,049	-				+1.2
3,416,049	-				+2.4
3,416,051	+				-0.0
3,416,051	+				-1.0
3,416,051	+				+1.2
3,416,051	+				-2.6
3,416,052	-				-1.7
3,416,052	-				+0.6
3,416,109	-		DZA65_RS15725	0.26	-0.3
3,416,109	-		DZA65_RS15725	0.26	+0.9
3,416,135	+				-1.0
3,416,135	+		DZA65_RS15725	0.41	-1.0
3,416,135	+		DZA65_RS15725	0.41	+0.6
3,416,135	+		DZA65_RS15725	0.41	-0.4
3,416,136	-		DZA65_RS15725	0.41	+0.4
3,416,136	-		DZA65_RS15725	0.41	-0.0
3,416,136	-		DZA65_RS15725	0.41	+0.0
3,416,136	-		DZA65_RS15725	0.41	-2.6
3,416,140	+		DZA65_RS15725	0.44	+0.2
3,416,197	+		DZA65_RS15725	0.76	-1.9
3,416,197	+		DZA65_RS15725	0.76	+0.6
3,416,197	+		DZA65_RS15725	0.76	+0.0
3,416,198	-		DZA65_RS15725	0.76	-1.2
3,416,214	+		DZA65_RS15725	0.85	+1.6
3,416,222	-				-0.1
3,416,229	+				+2.2
3,416,229	+				+0.1
3,416,237	+				-0.4
3,416,242	+				-0.5
3,416,242	+				+0.6
3,416,248	+				-0.4
3,416,251	+				+0.1
3,416,251	+				-0.1
3,416,251	+				-0.1
3,416,252	-		DZA65_RS15730	0.10	+0.4
3,416,252	-		DZA65_RS15730	0.10	-1.0
3,416,252	-		DZA65_RS15730	0.10	-0.4
3,416,252	-		DZA65_RS15730	0.10	+0.3
3,416,252	-		DZA65_RS15730	0.10	-2.4
3,416,252	-		DZA65_RS15730	0.10	+1.0
3,416,296	+		DZA65_RS15730	0.32	+0.7
3,416,297	-		DZA65_RS15730	0.32	-1.3
3,416,313	+		DZA65_RS15730	0.40	+0.8
3,416,313	+		DZA65_RS15730	0.40	-0.4
3,416,313	+		DZA65_RS15730	0.40	+0.3
3,416,313	+		DZA65_RS15730	0.40	-0.7
3,416,313	+		DZA65_RS15730	0.40	-1.0
3,416,314	-		DZA65_RS15730	0.41	-1.2
3,416,314	-		DZA65_RS15730	0.41	+0.2
3,416,314	-		DZA65_RS15730	0.41	-0.4
3,416,329	+		DZA65_RS15730	0.48	-1.2
3,416,330	-		DZA65_RS15730	0.49	-1.0
3,416,330	-		DZA65_RS15730	0.49	+0.9
3,416,330	-		DZA65_RS15730	0.49	-0.4
3,416,357	+		DZA65_RS15730	0.62	+1.2
3,416,523	+				+1.6
3,416,524	-				+1.2
3,416,619	+				-0.9
3,416,619	+				+0.4
3,416,655	+				-1.4
3,416,655	+				-0.2
3,416,697	+				+0.2
3,416,753	-				+0.1
3,416,753	-				+0.0
3,416,754	+				-0.7
3,416,755	-				+1.2
3,416,755	-				+0.7
3,416,755	-				+0.2
3,416,755	-				-1.7
3,416,755	-				-0.6
3,416,755	-				+0.6
3,416,790	+				+0.3
3,416,790	+				-2.1
3,416,797	+				-0.1
3,416,798	-				-1.1
3,416,805	+				+0.2
3,416,806	-				-1.3
3,416,961	+		DZA65_RS15735	0.15	+0.9
3,416,962	-		DZA65_RS15735	0.15	-1.4
3,417,012	-		DZA65_RS15735	0.20	+0.1
3,417,175	+		DZA65_RS15735	0.34	+0.2
3,417,175	+		DZA65_RS15735	0.34	+0.4
3,417,175	+		DZA65_RS15735	0.34	-1.4
3,417,176	-		DZA65_RS15735	0.34	-1.3
3,417,176	-		DZA65_RS15735	0.34	+1.0
3,417,187	-		DZA65_RS15735	0.35	-1.0
3,417,326	+		DZA65_RS15735	0.48	-1.8
3,417,326	+		DZA65_RS15735	0.48	-0.7
3,417,326	+		DZA65_RS15735	0.48	+0.6
3,417,326	+		DZA65_RS15735	0.48	-1.8
3,417,326	+		DZA65_RS15735	0.48	-1.4
3,417,327	-				-1.4
3,417,327	-		DZA65_RS15735	0.48	+0.4
3,417,327	-		DZA65_RS15735	0.48	+1.3
3,417,327	-		DZA65_RS15735	0.48	+1.4
3,417,327	-		DZA65_RS15735	0.48	-0.2
3,417,327	-		DZA65_RS15735	0.48	+0.3
3,417,328	+		DZA65_RS15735	0.48	-0.3
3,417,328	+		DZA65_RS15735	0.48	-1.7
3,417,328	+		DZA65_RS15735	0.48	-0.7
3,417,328	+		DZA65_RS15735	0.48	+0.2
3,417,328	+		DZA65_RS15735	0.48	-0.1
3,417,328	+		DZA65_RS15735	0.48	+0.2
3,417,328	+		DZA65_RS15735	0.48	-1.0
3,417,329	-		DZA65_RS15735	0.48	+0.0
3,417,329	-		DZA65_RS15735	0.48	-0.3
3,417,329	-		DZA65_RS15735	0.48	-2.7
3,417,329	-		DZA65_RS15735	0.48	-0.4
3,417,330	+		DZA65_RS15735	0.48	-2.8
3,417,330	+		DZA65_RS15735	0.48	-0.8
3,417,330	+		DZA65_RS15735	0.48	+0.6
3,417,330	+		DZA65_RS15735	0.48	-0.5
3,417,330	+		DZA65_RS15735	0.48	+0.0
3,417,330	+		DZA65_RS15735	0.48	-0.6
3,417,331	-		DZA65_RS15735	0.48	+0.7
3,417,331	-		DZA65_RS15735	0.48	+0.0
3,417,331	-		DZA65_RS15735	0.48	-1.4
3,417,382	+		DZA65_RS15735	0.53	+2.8
3,417,382	+		DZA65_RS15735	0.53	+0.4
3,417,383	-		DZA65_RS15735	0.53	-0.6
3,417,420	-		DZA65_RS15735	0.56	+0.6
3,417,420	-		DZA65_RS15735	0.56	+0.4
3,417,439	+		DZA65_RS15735	0.58	-1.0
3,417,439	+				+2.4
3,417,439	+		DZA65_RS15735	0.58	-2.0
3,417,439	+		DZA65_RS15735	0.58	-0.7
3,417,440	-		DZA65_RS15735	0.58	+0.2
3,417,472	+		DZA65_RS15735	0.61	+0.2
3,417,472	+		DZA65_RS15735	0.61	-2.6
3,417,472	+		DZA65_RS15735	0.61	-0.3
3,417,472	+		DZA65_RS15735	0.61	-2.7
3,417,472	+		DZA65_RS15735	0.61	-0.7
3,417,473	-		DZA65_RS15735	0.61	-0.6
3,417,473	-		DZA65_RS15735	0.61	+0.8
3,417,473	-		DZA65_RS15735	0.61	+0.3
3,417,473	-		DZA65_RS15735	0.61	-1.8
3,417,474	+		DZA65_RS15735	0.61	+0.0
3,417,475	-				+1.0
3,417,475	-		DZA65_RS15735	0.61	-1.7
3,417,475	-		DZA65_RS15735	0.61	-0.4
3,417,489	-		DZA65_RS15735	0.62	+2.4
3,417,489	-		DZA65_RS15735	0.62	-2.2
3,417,489	-		DZA65_RS15735	0.62	-1.2
3,417,523	+		DZA65_RS15735	0.65	+1.3
3,417,524	-		DZA65_RS15735	0.65	-0.2
3,417,524	-		DZA65_RS15735	0.65	+0.9
3,417,582	+		DZA65_RS15735	0.70	+2.5
3,417,583	-		DZA65_RS15735	0.71	+0.3
3,417,583	-		DZA65_RS15735	0.71	+0.4
3,417,583	-		DZA65_RS15735	0.71	-2.4
3,417,605	+		DZA65_RS15735	0.73	-1.4
3,417,652	+		DZA65_RS15735	0.77	+0.9
3,417,806	-				+1.0
3,417,883	-				-0.8
3,417,910	+				-0.5
3,417,910	+				-2.4
3,417,911	-				+0.0
3,417,921	+				-1.7
3,417,930	+				-0.9
3,418,074	+				-0.7
3,418,074	+				+3.1
3,418,074	+				-2.6
3,418,074	+				+0.0
3,418,074	+				-1.0
3,418,074	+				+0.0
3,418,075	-				-3.3
3,418,075	-				-2.8
3,418,075	-				+1.6
3,418,075	-				+1.1
3,418,075	-				+0.7
3,418,075	-				-0.7
3,418,075	-				-0.4
3,418,080	+				-0.8
3,418,081	-				+1.2
3,418,081	-				-0.2
3,418,144	+				+1.9
3,418,144	+				-0.6
3,418,144	+				+0.2
3,418,144	+				+0.7
3,418,195	+		DZA65_RS15740	0.20	+0.6
3,418,195	+		DZA65_RS15740	0.20	+0.6
3,418,196	-		DZA65_RS15740	0.21	-0.4
3,418,196	-		DZA65_RS15740	0.21	+0.2
3,418,226	-		DZA65_RS15740	0.37	-0.2
3,418,269	+		DZA65_RS15740	0.59	+0.2
3,418,273	+		DZA65_RS15740	0.61	-1.2
3,418,273	+		DZA65_RS15740	0.61	+0.5
3,418,273	+		DZA65_RS15740	0.61	-2.0
3,418,274	-		DZA65_RS15740	0.62	-2.0
3,418,327	+				-0.2
3,418,327	+				+0.9
3,418,343	+				+0.4
3,418,343	+				+0.2
3,418,344	-				+0.0
3,418,375	+				-0.6
3,418,375	+				-1.4
3,418,376	-				-0.1
3,418,376	-				+0.6
3,418,376	-				-2.3
3,418,376	-				+1.0
3,418,394	-				-0.8
3,418,456	-				-1.3
3,418,456	-				+0.6
3,418,753	+		DZA65_RS15745	0.22	+0.0
3,418,753	+		DZA65_RS15745	0.22	-0.1
3,418,754	-		DZA65_RS15745	0.22	+0.9
3,418,754	-		DZA65_RS15745	0.22	-0.2
3,418,754	-		DZA65_RS15745	0.22	-0.3
3,418,824	+		DZA65_RS15745	0.29	+1.0
3,418,824	+		DZA65_RS15745	0.29	+0.6
3,418,825	-		DZA65_RS15745	0.29	+0.4