Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15420

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,342,914	+				-0.2
3,342,914	+				-1.0
3,342,915	-				-0.7
3,342,915	-				-0.5
3,342,915	-				+0.4
3,342,915	-				-1.4
3,342,915	-				+0.1
3,342,915	-				+1.0
3,342,915	-				+1.3
3,342,917	+				+0.4
3,342,918	-				+0.6
3,342,918	-				-2.7
3,342,959	+				-0.7
3,342,959	+				-0.1
3,342,959	+				-0.6
3,342,959	+				-0.1
3,342,959	+				+0.7
3,342,959	+				+0.0
3,342,960	-				-0.4
3,342,960	-				-0.4
3,342,960	-				+1.6
3,342,960	-				-0.4
3,342,960	-				+0.8
3,342,960	-				-1.4
3,342,981	+				+0.0
3,343,017	+				-2.7
3,343,017	+				-1.4
3,343,018	-				+1.8
3,343,018	-				-0.4
3,343,018	-				-0.3
3,343,018	-				+0.3
3,343,048	+				-0.5
3,343,048	+				+0.4
3,343,048	+				-1.4
3,343,048	+				-0.9
3,343,048	+				+0.8
3,343,048	+				-2.6
3,343,048	+				+0.6
3,343,048	+				+0.2
3,343,049	-				+1.1
3,343,479	+		DZA65_RS15420	0.25	+0.2
3,343,545	-		DZA65_RS15420	0.29	+0.6
3,343,597	-		DZA65_RS15420	0.31	-0.7
3,343,709	+		DZA65_RS15420	0.37	+0.9
3,343,736	-		DZA65_RS15420	0.38	-0.3
3,343,737	+		DZA65_RS15420	0.38	-0.3
3,343,738	-		DZA65_RS15420	0.38	+0.2
3,343,738	-		DZA65_RS15420	0.38	-0.7
3,343,738	-		DZA65_RS15420	0.38	-0.4
3,343,802	+		DZA65_RS15420	0.41	+0.8
3,343,802	+		DZA65_RS15420	0.41	-0.6
3,343,846	+		DZA65_RS15420	0.44	-0.9
3,343,846	+		DZA65_RS15420	0.44	+3.2
3,343,847	-		DZA65_RS15420	0.44	-1.4
3,343,847	-		DZA65_RS15420	0.44	-0.4
3,343,904	-		DZA65_RS15420	0.46	-0.4
3,343,978	+		DZA65_RS15420	0.50	-0.1
3,343,979	-		DZA65_RS15420	0.50	-1.2
3,343,979	-		DZA65_RS15420	0.50	+0.4
3,344,045	-		DZA65_RS15420	0.53	-0.1
3,344,045	-		DZA65_RS15420	0.53	+0.4
3,344,045	-		DZA65_RS15420	0.53	-0.1
3,344,045	-		DZA65_RS15420	0.53	+1.0
3,344,078	+		DZA65_RS15420	0.55	+1.2
3,344,078	+		DZA65_RS15420	0.55	+0.0
3,344,078	+		DZA65_RS15420	0.55	-1.4
3,344,079	-		DZA65_RS15420	0.55	+2.3
3,344,079	-		DZA65_RS15420	0.55	-0.2
3,344,100	+		DZA65_RS15420	0.56	+0.3
3,344,176	+		DZA65_RS15420	0.60	-1.9
3,344,177	-		DZA65_RS15420	0.60	+1.9
3,344,177	-		DZA65_RS15420	0.60	-0.7
3,344,177	-		DZA65_RS15420	0.60	+1.9
3,344,261	+		DZA65_RS15420	0.64	+1.5
3,344,261	+		DZA65_RS15420	0.64	-0.2
3,344,261	+		DZA65_RS15420	0.64	+1.1
3,344,262	-		DZA65_RS15420	0.64	-1.0
3,344,262	-		DZA65_RS15420	0.64	-1.0
3,344,262	-		DZA65_RS15420	0.64	+0.5
3,344,262	-		DZA65_RS15420	0.64	-0.1
3,344,262	-		DZA65_RS15420	0.64	-3.0
3,344,262	-		DZA65_RS15420	0.64	+0.6
3,344,262	-		DZA65_RS15420	0.64	+1.3
3,344,373	-		DZA65_RS15420	0.70	+1.0
3,344,480	-		DZA65_RS15420	0.75	-1.4
3,344,480	-		DZA65_RS15420	0.75	-0.3
3,344,480	-		DZA65_RS15420	0.75	-2.2
3,344,480	-		DZA65_RS15420	0.75	-0.8
3,344,488	+		DZA65_RS15420	0.75	+1.3
3,344,489	-		DZA65_RS15420	0.75	+1.1
3,344,539	+		DZA65_RS15420	0.78	-0.3
3,344,539	+		DZA65_RS15420	0.78	+1.5
3,344,540	-		DZA65_RS15420	0.78	+0.3
3,344,566	+		DZA65_RS15420	0.79	+0.1
3,344,647	-		DZA65_RS15420	0.83	-0.4
3,344,815	+				+0.9
3,344,816	-				+1.2
3,344,816	-				+2.3
3,344,846	+				-0.4
3,344,846	+				-0.1
3,344,846	+				+0.8
3,344,846	+				+1.2
3,344,846	+				+0.4
3,344,846	+				+0.1
3,344,846	+				-1.7
3,344,847	-				+0.7
3,344,847	-				-1.2
3,344,847	-				+0.1
3,344,847	-				+0.6
3,344,847	-				-0.3
3,344,888	+				+0.6
3,344,889	-				+3.5
3,344,981	+				-0.4
3,344,981	+				+0.0
3,344,983	+				-0.4
3,344,983	+				-0.1
3,344,983	+				+0.9
3,344,991	+				-0.3
3,344,991	+				+0.0
3,344,991	+				+0.6
3,344,991	+				+0.6
3,344,991	+				+2.8
3,344,992	-				-0.5
3,344,992	-				-1.4
3,344,992	-				-0.7
3,344,992	-				+1.4
3,344,993	+				+0.8
3,344,993	+				-1.0
3,344,993	+				-0.0
3,344,993	+				-0.6
3,344,993	+				-0.2
3,344,993	+				-2.0
3,344,993	+				+0.9
3,344,993	+				-0.4
3,344,993	+				-0.4
3,344,993	+				+1.1
3,344,993	+				+2.5
3,344,993	+				+0.9
3,344,994	-				+2.3
3,344,994	-				-0.1
3,344,994	-				-1.6
3,344,994	-				-1.0
3,344,994	-				+1.0
3,344,994	-				+0.1
3,344,994	-				-2.0
3,344,994	-				+0.3
3,344,994	-				-1.9
3,344,994	-				+0.1
3,344,995	+				-1.7
3,344,995	+				+0.4
3,344,995	+				+0.3
3,344,995	+				+0.1
3,344,996	-				+0.1
3,344,996	-				-0.1
3,344,996	-				+0.4
3,345,040	+				-0.3
3,345,040	+				+1.3
3,345,041	-				-0.9
3,345,042	+				+0.6
3,345,043	-				-0.3
3,345,102	+				-0.1
3,345,102	+				+0.0
3,345,103	-				-0.7
3,345,103	-				-1.3
3,345,103	-				-1.0
3,345,103	-				-0.4
3,345,103	-				+1.6
3,345,103	-				+2.9
3,345,103	-				+0.1
3,345,159	+				-0.4
3,345,213	+		DZA65_RS15425	0.16	-0.8
3,345,214	-		DZA65_RS15425	0.16	-0.9
3,345,252	+		DZA65_RS15425	0.22	-1.4
3,345,252	+		DZA65_RS15425	0.22	-0.3
3,345,253	-		DZA65_RS15425	0.22	+0.9
3,345,285	+		DZA65_RS15425	0.27	+1.2
3,345,285	+		DZA65_RS15425	0.27	+1.2
3,345,285	+		DZA65_RS15425	0.27	-0.3
3,345,286	-		DZA65_RS15425	0.28	-0.9
3,345,305	+		DZA65_RS15425	0.31	+0.6
3,345,306	-		DZA65_RS15425	0.31	+0.9
3,345,306	-		DZA65_RS15425	0.31	+0.6
3,345,350	+		DZA65_RS15425	0.38	-1.7
3,345,351	-		DZA65_RS15425	0.38	-0.1
3,345,351	-		DZA65_RS15425	0.38	+1.0
3,345,351	-		DZA65_RS15425	0.38	+0.6
3,345,400	-		DZA65_RS15425	0.46	-1.0
3,345,462	-		DZA65_RS15425	0.56	+0.2
3,345,470	+		DZA65_RS15425	0.57	+0.9
3,345,470	+		DZA65_RS15425	0.57	+0.2
3,345,470	+		DZA65_RS15425	0.57	-1.4
3,345,470	+		DZA65_RS15425	0.57	-0.1
3,345,471	-		DZA65_RS15425	0.57	+1.5
3,345,471	-		DZA65_RS15425	0.57	+1.1
3,345,471	-		DZA65_RS15425	0.57	+0.2
3,345,471	-		DZA65_RS15425	0.57	-0.7
3,345,471	-		DZA65_RS15425	0.57	+0.1
3,345,471	-		DZA65_RS15425	0.57	+0.5
3,345,471	-		DZA65_RS15425	0.57	-0.1
3,345,509	+		DZA65_RS15425	0.63	+1.4
3,345,509	+		DZA65_RS15425	0.63	-1.4
3,345,509	+		DZA65_RS15425	0.63	+0.2
3,345,509	+		DZA65_RS15425	0.63	+0.2
3,345,509	+		DZA65_RS15425	0.63	+0.3
3,345,509	+		DZA65_RS15425	0.63	-0.4
3,345,509	+		DZA65_RS15425	0.63	+1.6
3,345,510	-		DZA65_RS15425	0.63	+0.2
3,345,510	-		DZA65_RS15425	0.63	+0.6
3,345,510	-		DZA65_RS15425	0.63	-0.9
3,345,510	-		DZA65_RS15425	0.63	+0.3
3,345,513	+		DZA65_RS15425	0.64	-1.6
3,345,514	-		DZA65_RS15425	0.64	+0.0
3,345,514	-		DZA65_RS15425	0.64	-1.4
3,345,524	+		DZA65_RS15425	0.65	-1.7
3,345,524	+		DZA65_RS15425	0.65	-0.1
3,345,524	+		DZA65_RS15425	0.65	-0.4
3,345,524	+		DZA65_RS15425	0.65	+0.0
3,345,524	+		DZA65_RS15425	0.65	-1.0
3,345,524	+		DZA65_RS15425	0.65	+0.3
3,345,524	+		DZA65_RS15425	0.65	+0.2
3,345,524	+		DZA65_RS15425	0.65	+0.3
3,345,524	+		DZA65_RS15425	0.65	+0.6
3,345,524	+		DZA65_RS15425	0.65	+0.3
3,345,525	-		DZA65_RS15425	0.66	+0.9
3,345,525	-		DZA65_RS15425	0.66	+0.8
3,345,525	-		DZA65_RS15425	0.66	-0.1
3,345,525	-		DZA65_RS15425	0.66	+0.1
3,345,525	-		DZA65_RS15425	0.66	-0.7
3,345,525	-		DZA65_RS15425	0.66	-0.5
3,345,525	-		DZA65_RS15425	0.66	+0.6
3,345,525	-		DZA65_RS15425	0.66	+0.3
3,345,663	-		DZA65_RS15425	0.87	-1.1
3,345,696	+				+2.0
3,345,727	+				-0.1
3,345,727	+				-1.0
3,345,727	+				+2.4
3,345,727	+				+0.3
3,345,727	+				-0.4
3,345,727	+				-0.6
3,345,727	+				-0.4
3,345,727	+				-1.2
3,345,727	+				+0.0
3,345,727	+				-0.8
3,345,727	+				-1.1
3,345,728	-				-1.4
3,345,728	-				-0.6
3,345,728	-				-0.6
3,345,728	-				-0.6
3,345,728	-				+0.7
3,345,728	-				-2.4
3,345,728	-				+0.3
3,345,728	-				-1.0
3,345,768	-				+1.2
3,345,781	+				-0.4
3,345,781	+				-1.4
3,345,854	+		DZA65_RS15430	0.13	+0.1
3,345,854	+		DZA65_RS15430	0.13	+0.3
3,345,855	-		DZA65_RS15430	0.13	+0.2
3,345,881	+		DZA65_RS15430	0.17	-0.8
3,345,881	+		DZA65_RS15430	0.17	+0.4
3,345,881	+		DZA65_RS15430	0.17	+0.6
3,345,966	+		DZA65_RS15430	0.29	-0.7
3,345,967	-		DZA65_RS15430	0.30	-2.9