Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15325

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,322,082	+		DZA65_RS15315	0.65	-0.1
3,322,082	+		DZA65_RS15315	0.65	+1.3
3,322,083	-		DZA65_RS15315	0.66	+0.8
3,322,083	-		DZA65_RS15315	0.66	-0.5
3,322,083	-		DZA65_RS15315	0.66	-1.4
3,322,083	-		DZA65_RS15315	0.66	+1.6
3,322,094	+		DZA65_RS15315	0.67	-0.7
3,322,095	-		DZA65_RS15315	0.67	+1.6
3,322,115	+		DZA65_RS15315	0.70	-0.4
3,322,115	+		DZA65_RS15315	0.70	+0.4
3,322,115	+		DZA65_RS15315	0.70	+0.8
3,322,115	+		DZA65_RS15315	0.70	+0.5
3,322,115	+		DZA65_RS15315	0.70	-0.0
3,322,115	+		DZA65_RS15315	0.70	+0.6
3,322,116	-		DZA65_RS15315	0.70	+0.6
3,322,116	-		DZA65_RS15315	0.70	+0.1
3,322,139	+		DZA65_RS15315	0.73	-0.0
3,322,139	+		DZA65_RS15315	0.73	+0.1
3,322,139	+		DZA65_RS15315	0.73	+0.7
3,322,139	+		DZA65_RS15315	0.73	-0.8
3,322,139	+		DZA65_RS15315	0.73	+0.8
3,322,139	+		DZA65_RS15315	0.73	-1.5
3,322,139	+		DZA65_RS15315	0.73	-1.0
3,322,139	+		DZA65_RS15315	0.73	+2.2
3,322,139	+		DZA65_RS15315	0.73	-0.9
3,322,139	+		DZA65_RS15315	0.73	-0.8
3,322,139	+		DZA65_RS15315	0.73	-0.4
3,322,140	-		DZA65_RS15315	0.74	+1.0
3,322,140	-		DZA65_RS15315	0.74	+0.1
3,322,140	-		DZA65_RS15315	0.74	+0.1
3,322,140	-		DZA65_RS15315	0.74	+1.1
3,322,140	-		DZA65_RS15315	0.74	+0.8
3,322,140	-		DZA65_RS15315	0.74	-0.1
3,322,140	-		DZA65_RS15315	0.74	+0.4
3,322,140	-		DZA65_RS15315	0.74	-0.6
3,322,143	+		DZA65_RS15315	0.74	+1.4
3,322,144	-		DZA65_RS15315	0.74	+0.5
3,322,144	-		DZA65_RS15315	0.74	+0.3
3,322,144	-		DZA65_RS15315	0.74	+1.1
3,322,307	+				+1.0
3,322,307	+				+1.0
3,322,307	+				+1.4
3,322,307	+				+1.0
3,322,308	-				-1.6
3,322,308	-				+0.2
3,322,329	+				-0.4
3,322,329	+				+0.7
3,322,329	+				-1.2
3,322,329	+				-0.2
3,322,329	+				-0.0
3,322,329	+				+0.2
3,322,334	+				+0.5
3,322,335	-				-0.6
3,322,356	+				+0.4
3,322,399	+		DZA65_RS15320	0.11	+0.7
3,322,399	+		DZA65_RS15320	0.11	-0.7
3,322,400	-		DZA65_RS15320	0.11	-1.4
3,322,410	+		DZA65_RS15320	0.13	-1.7
3,322,410	+		DZA65_RS15320	0.13	-0.4
3,322,410	+		DZA65_RS15320	0.13	-0.2
3,322,411	-		DZA65_RS15320	0.13	+0.2
3,322,411	-		DZA65_RS15320	0.13	+1.2
3,322,665	+		DZA65_RS15320	0.50	-0.0
3,322,665	+		DZA65_RS15320	0.50	+0.6
3,322,692	+		DZA65_RS15320	0.54	-1.4
3,322,692	+		DZA65_RS15320	0.54	-0.1
3,322,693	-		DZA65_RS15320	0.54	-0.8
3,322,693	-		DZA65_RS15320	0.54	-1.5
3,322,705	+		DZA65_RS15320	0.56	-0.0
3,322,705	+		DZA65_RS15320	0.56	+1.5
3,322,706	-		DZA65_RS15320	0.56	+0.9
3,322,706	-		DZA65_RS15320	0.56	-0.7
3,322,717	+		DZA65_RS15320	0.57	-1.2
3,322,717	+		DZA65_RS15320	0.57	+1.1
3,322,717	+		DZA65_RS15320	0.57	-2.2
3,322,720	+		DZA65_RS15320	0.58	+0.7
3,322,721	-				+2.6
3,322,721	-		DZA65_RS15320	0.58	-0.8
3,322,721	-		DZA65_RS15320	0.58	+0.6
3,322,762	+		DZA65_RS15320	0.64	-1.0
3,322,855	+		DZA65_RS15320	0.77	-1.5
3,322,855	+		DZA65_RS15320	0.77	+0.7
3,322,855	+		DZA65_RS15320	0.77	-0.3
3,322,855	+		DZA65_RS15320	0.77	-2.2
3,322,855	+		DZA65_RS15320	0.77	+2.9
3,322,855	+		DZA65_RS15320	0.77	-0.2
3,322,855	+		DZA65_RS15320	0.77	+1.6
3,322,855	+		DZA65_RS15320	0.77	-1.9
3,322,856	-				+2.2
3,322,856	-		DZA65_RS15320	0.77	+0.4
3,322,856	-		DZA65_RS15320	0.77	+1.4
3,322,856	-		DZA65_RS15320	0.77	+0.2
3,322,856	-		DZA65_RS15320	0.77	+2.9
3,322,856	-		DZA65_RS15320	0.77	-0.2
3,322,856	-		DZA65_RS15320	0.77	-0.7
3,322,858	-		DZA65_RS15320	0.78	-0.1
3,322,922	+		DZA65_RS15320	0.87	+1.3
3,322,988	+				-0.4
3,322,988	+				-0.1
3,322,988	+				-1.4
3,322,989	-				-0.1
3,322,989	-				+0.1
3,323,004	+				-0.5
3,323,004	+				-0.8
3,323,005	-				+2.4
3,323,005	-				-0.5
3,323,012	+				-0.3
3,323,012	+				+0.1
3,323,012	+				-0.3
3,323,012	+				+0.6
3,323,013	-				-2.2
3,323,013	-				-0.2
3,323,013	-				-0.8
3,323,013	-				-1.7
3,323,081	+				+1.3
3,323,081	+				-0.1
3,323,108	+				-0.3
3,323,108	+				+1.4
3,323,108	+				-1.2
3,323,108	+				-0.4
3,323,108	+				-0.3
3,323,109	-				-2.3
3,323,125	-				-3.2
3,323,125	-				+1.4
3,323,129	+				-1.6
3,323,129	+				+0.9
3,323,129	+				-1.0
3,323,129	+				+0.6
3,323,129	+				-1.0
3,323,129	+				-0.1
3,323,130	-				-1.2
3,323,130	-				-0.7
3,323,134	-				+0.9
3,323,264	+		DZA65_RS15325	0.24	-0.3
3,323,264	+		DZA65_RS15325	0.24	-1.7
3,323,265	-				-0.4
3,323,265	-		DZA65_RS15325	0.24	-1.6
3,323,265	-		DZA65_RS15325	0.24	-1.7
3,323,265	-		DZA65_RS15325	0.24	-1.1
3,323,357	+		DZA65_RS15325	0.36	-0.9
3,323,357	+		DZA65_RS15325	0.36	-0.8
3,323,357	+		DZA65_RS15325	0.36	+1.4
3,323,357	+		DZA65_RS15325	0.36	-0.5
3,323,358	-		DZA65_RS15325	0.36	-0.7
3,323,358	-		DZA65_RS15325	0.36	-2.1
3,323,358	-		DZA65_RS15325	0.36	-0.5
3,323,411	+		DZA65_RS15325	0.42	+1.2
3,323,423	+		DZA65_RS15325	0.44	-1.3
3,323,424	-		DZA65_RS15325	0.44	-1.7
3,323,424	-		DZA65_RS15325	0.44	-1.1
3,323,424	-		DZA65_RS15325	0.44	+0.6
3,323,463	+		DZA65_RS15325	0.49	+0.2
3,323,463	+		DZA65_RS15325	0.49	-0.1
3,323,464	-		DZA65_RS15325	0.49	-1.7
3,323,534	+		DZA65_RS15325	0.58	+0.7
3,323,535	-		DZA65_RS15325	0.58	-1.0
3,323,535	-		DZA65_RS15325	0.58	-0.6
3,323,595	+		DZA65_RS15325	0.66	+0.4
3,323,595	+		DZA65_RS15325	0.66	+1.0
3,323,595	+				+1.6
3,323,596	-		DZA65_RS15325	0.66	-2.2
3,323,596	-		DZA65_RS15325	0.66	+2.2
3,323,596	-		DZA65_RS15325	0.66	-0.9
3,323,596	-		DZA65_RS15325	0.66	-0.4
3,323,756	+		DZA65_RS15325	0.87	+0.1
3,323,756	+		DZA65_RS15325	0.87	+0.3
3,323,756	+		DZA65_RS15325	0.87	+2.6
3,323,757	-		DZA65_RS15325	0.87	-1.6
3,323,822	-				-0.0
3,323,872	-				-1.2
3,323,876	+				-1.0
3,323,876	+				-0.0
3,323,877	-				+1.7
3,323,877	-				-2.2
3,323,877	-				-0.7
3,323,885	+				+0.6
3,323,885	+				-0.5
3,323,885	+				-0.6
3,323,885	+				+1.3
3,323,885	+				-0.8
3,323,885	+				-0.8
3,323,885	+				-0.2
3,323,886	-				+2.2
3,323,886	-				+1.7
3,323,886	-				+0.4
3,323,886	-				-0.6
3,323,886	-				-1.7
3,323,886	-				-1.0
3,323,886	-				+1.3
3,323,886	-				-0.0
3,323,886	-				-1.2
3,323,886	-				-1.7
3,323,886	-				-0.0
3,323,939	+				-0.7
3,323,952	-				+0.6
3,324,053	+				-1.4
3,324,066	-				+0.3
3,324,126	+				-0.7
3,324,126	+				+0.6
3,324,127	-				-1.2
3,324,127	-				+0.1
3,324,127	-				+0.8
3,324,127	-				+0.6
3,324,127	-				-0.6
3,324,127	-				-1.4
3,324,130	+				+0.6
3,324,130	+				-0.4
3,324,131	-				+1.9
3,324,131	-				-1.1
3,324,131	-				-0.5
3,324,137	+				-1.4
3,324,137	+				+0.1
3,324,229	+				+0.4
3,324,525	-		DZA65_RS15330	0.49	-1.3