Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15240

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,306,844	+		DZA65_RS15230	0.86	+1.1
3,306,876	+				-0.2
3,306,876	+				+0.3
3,306,883	+				-0.0
3,306,883	+				+1.1
3,306,895	+				-0.8
3,306,895	+				+0.6
3,306,895	+				-0.0
3,307,020	+		DZA65_RS15235	0.15	+1.9
3,307,020	+		DZA65_RS15235	0.15	-2.2
3,307,020	+		DZA65_RS15235	0.15	-0.7
3,307,063	+				-0.4
3,307,063	+		DZA65_RS15235	0.19	+0.4
3,307,137	+		DZA65_RS15235	0.28	-1.4
3,307,147	+		DZA65_RS15235	0.29	-0.9
3,307,147	+		DZA65_RS15235	0.29	-1.8
3,307,147	+		DZA65_RS15235	0.29	+0.6
3,307,147	+		DZA65_RS15235	0.29	-0.6
3,307,147	+		DZA65_RS15235	0.29	+0.2
3,307,147	+		DZA65_RS15235	0.29	+0.6
3,307,147	+		DZA65_RS15235	0.29	+0.5
3,307,149	+		DZA65_RS15235	0.29	-1.4
3,307,318	+		DZA65_RS15235	0.48	-1.2
3,307,318	+		DZA65_RS15235	0.48	+2.1
3,307,342	+		DZA65_RS15235	0.51	+1.2
3,307,494	+		DZA65_RS15235	0.68	-1.0
3,307,496	+		DZA65_RS15235	0.68	+0.2
3,307,496	+		DZA65_RS15235	0.68	+0.7
3,307,496	+		DZA65_RS15235	0.68	+0.9
3,307,496	+		DZA65_RS15235	0.68	+0.1
3,307,496	+		DZA65_RS15235	0.68	-1.4
3,307,572	+		DZA65_RS15235	0.76	-1.8
3,307,582	+		DZA65_RS15235	0.77	-0.6
3,307,663	+		DZA65_RS15235	0.86	-1.4
3,307,665	+		DZA65_RS15235	0.87	-0.1
3,307,665	+		DZA65_RS15235	0.87	-0.0
3,307,705	+				+0.6
3,307,763	+				-0.8
3,307,771	+				+1.1
3,307,775	+				-0.3
3,307,775	+				+0.1
3,308,019	+		DZA65_RS15240	0.11	-1.2
3,308,019	+		DZA65_RS15240	0.11	-0.4
3,308,019	+		DZA65_RS15240	0.11	-1.3
3,308,019	+		DZA65_RS15240	0.11	-0.1
3,308,019	+		DZA65_RS15240	0.11	-0.8
3,308,077	+		DZA65_RS15240	0.14	-0.2
3,308,316	+		DZA65_RS15240	0.25	-0.0
3,308,316	+		DZA65_RS15240	0.25	+0.1
3,308,316	+		DZA65_RS15240	0.25	+1.6
3,308,316	+		DZA65_RS15240	0.25	-0.4
3,308,370	+		DZA65_RS15240	0.28	-2.9
3,308,370	+		DZA65_RS15240	0.28	+0.6
3,308,370	+		DZA65_RS15240	0.28	-0.1
3,308,370	+		DZA65_RS15240	0.28	-0.4
3,308,370	+		DZA65_RS15240	0.28	+0.6
3,308,370	+		DZA65_RS15240	0.28	+1.0
3,308,370	+		DZA65_RS15240	0.28	+0.0
3,308,370	+		DZA65_RS15240	0.28	+1.0
3,308,544	+		DZA65_RS15240	0.37	+0.6
3,308,544	+		DZA65_RS15240	0.37	+0.1
3,308,544	+		DZA65_RS15240	0.37	+0.1
3,308,544	+		DZA65_RS15240	0.37	+0.2
3,308,544	+		DZA65_RS15240	0.37	+0.9
3,308,544	+		DZA65_RS15240	0.37	+0.2
3,308,544	+		DZA65_RS15240	0.37	-1.7
3,308,544	+		DZA65_RS15240	0.37	+0.1
3,308,544	+		DZA65_RS15240	0.37	-0.1
3,308,544	+		DZA65_RS15240	0.37	-2.2
3,308,544	+		DZA65_RS15240	0.37	-0.3
3,308,544	+		DZA65_RS15240	0.37	-1.8
3,308,544	+		DZA65_RS15240	0.37	+0.2
3,308,544	+		DZA65_RS15240	0.37	+0.4
3,308,687	+		DZA65_RS15240	0.44	+0.6
3,308,721	+		DZA65_RS15240	0.45	-2.6
3,308,721	+		DZA65_RS15240	0.45	+0.1
3,308,721	+		DZA65_RS15240	0.45	+0.6
3,308,721	+		DZA65_RS15240	0.45	-1.0
3,308,721	+		DZA65_RS15240	0.45	-0.1
3,308,724	+		DZA65_RS15240	0.46	-0.2
3,308,724	+		DZA65_RS15240	0.46	-0.3
3,308,724	+		DZA65_RS15240	0.46	-0.4
3,308,724	+		DZA65_RS15240	0.46	-0.4
3,308,801	+		DZA65_RS15240	0.49	-0.3
3,308,924	+		DZA65_RS15240	0.55	-1.4
3,308,924	+		DZA65_RS15240	0.55	+0.7
3,308,924	+		DZA65_RS15240	0.55	-0.1
3,308,924	+		DZA65_RS15240	0.55	-0.4
3,308,964	+		DZA65_RS15240	0.57	-1.2
3,308,964	+		DZA65_RS15240	0.57	+0.6
3,308,964	+		DZA65_RS15240	0.57	-0.3
3,308,964	+		DZA65_RS15240	0.57	+2.6
3,308,964	+		DZA65_RS15240	0.57	-1.0
3,308,964	+		DZA65_RS15240	0.57	-1.6
3,308,964	+		DZA65_RS15240	0.57	-0.6
3,308,964	+		DZA65_RS15240	0.57	-0.6
3,308,964	+		DZA65_RS15240	0.57	-2.4
3,308,964	+		DZA65_RS15240	0.57	-1.2
3,308,964	+		DZA65_RS15240	0.57	-0.5
3,308,965	-		DZA65_RS15240	0.57	+1.1
3,308,965	-		DZA65_RS15240	0.57	-0.7
3,309,054	+		DZA65_RS15240	0.62	-0.0
3,309,054	+				-0.0
3,309,054	+		DZA65_RS15240	0.62	-2.0
3,309,054	+		DZA65_RS15240	0.62	+0.8
3,309,054	+		DZA65_RS15240	0.62	+0.6
3,309,054	+		DZA65_RS15240	0.62	+1.6
3,309,054	+		DZA65_RS15240	0.62	+1.1
3,309,054	+		DZA65_RS15240	0.62	+0.0
3,309,054	+		DZA65_RS15240	0.62	-0.4
3,309,054	+		DZA65_RS15240	0.62	+0.6
3,309,058	+		DZA65_RS15240	0.62	-1.4
3,309,096	+		DZA65_RS15240	0.64	-0.4
3,309,096	+		DZA65_RS15240	0.64	+0.6
3,309,129	+		DZA65_RS15240	0.66	+0.0
3,309,130	-		DZA65_RS15240	0.66	-1.8
3,309,217	+		DZA65_RS15240	0.70	+0.9
3,309,217	+		DZA65_RS15240	0.70	-0.8
3,309,218	-		DZA65_RS15240	0.70	-0.0
3,309,218	-		DZA65_RS15240	0.70	-1.0
3,309,218	-		DZA65_RS15240	0.70	-0.9
3,309,273	+		DZA65_RS15240	0.73	-1.0
3,309,293	+		DZA65_RS15240	0.74	+0.1
3,309,352	-		DZA65_RS15240	0.77	+1.6
3,309,400	+		DZA65_RS15240	0.79	-1.6
3,309,401	-		DZA65_RS15240	0.79	-1.3
3,309,401	-		DZA65_RS15240	0.79	-0.2
3,309,415	+		DZA65_RS15240	0.80	+1.6
3,309,627	+				-1.0
3,309,628	-				-1.3
3,309,628	-				+0.1
3,309,628	-				+0.4
3,309,628	-				+0.6
3,309,641	+				-2.6
3,309,641	+				+1.9
3,309,642	-				+0.4
3,309,642	-				-0.2
3,309,642	-				-2.6
3,309,642	-				-0.6
3,309,676	+				+0.3
3,309,676	+				+0.1
3,309,676	+				-0.4
3,309,677	-				+1.6
3,309,677	-				-2.4
3,309,677	-				-0.4
3,309,677	-				-1.2
3,309,742	+				-0.7
3,309,791	-				-1.8
3,309,842	+				+0.2
3,309,842	+				+0.0
3,309,842	+				+1.3
3,309,842	+				+3.0
3,309,842	+				-0.2
3,309,842	+				-0.0
3,309,842	+				+1.4
3,309,917	+		DZA65_RS15245	0.37	+0.6
3,309,965	+		DZA65_RS15245	0.56	-0.0
3,309,976	+		DZA65_RS15245	0.61	-0.4
3,310,083	+				+0.0
3,310,088	+				-0.0
3,310,132	+				-0.0
3,310,254	+				+0.7
3,310,254	+				+0.1
3,310,318	+		DZA65_RS15250	0.14	+0.6
3,310,318	+		DZA65_RS15250	0.14	+0.0
3,310,318	+		DZA65_RS15250	0.14	+0.4
3,310,318	+		DZA65_RS15250	0.14	-0.8
3,310,318	+		DZA65_RS15250	0.14	-0.0
3,310,318	+		DZA65_RS15250	0.14	+0.3
3,310,318	+		DZA65_RS15250	0.14	+0.6
3,310,322	+		DZA65_RS15250	0.15	-2.0
3,310,322	+		DZA65_RS15250	0.15	-0.2
3,310,322	+		DZA65_RS15250	0.15	-0.8
3,310,322	+		DZA65_RS15250	0.15	-0.6
3,310,345	+		DZA65_RS15250	0.19	+0.3
3,310,345	+		DZA65_RS15250	0.19	-0.4
3,310,357	+		DZA65_RS15250	0.21	-0.5
3,310,357	+		DZA65_RS15250	0.21	+0.3
3,310,357	+		DZA65_RS15250	0.21	-1.4
3,310,357	+		DZA65_RS15250	0.21	+0.6
3,310,360	+		DZA65_RS15250	0.22	-0.2
3,310,366	-		DZA65_RS15250	0.23	-1.4
3,310,369	+		DZA65_RS15250	0.23	-1.3
3,310,369	+		DZA65_RS15250	0.23	-0.0
3,310,369	+		DZA65_RS15250	0.23	+0.8
3,310,369	+		DZA65_RS15250	0.23	-2.0
3,310,369	+		DZA65_RS15250	0.23	+0.5
3,310,369	+		DZA65_RS15250	0.23	-0.2
3,310,378	+		DZA65_RS15250	0.25	-1.2
3,310,378	+		DZA65_RS15250	0.25	+0.2
3,310,378	+		DZA65_RS15250	0.25	-1.5
3,310,378	+		DZA65_RS15250	0.25	-0.1
3,310,382	+		DZA65_RS15250	0.26	-1.2
3,310,382	+		DZA65_RS15250	0.26	-0.4
3,310,401	+		DZA65_RS15250	0.29	+1.6
3,310,401	+		DZA65_RS15250	0.29	-1.0
3,310,401	+		DZA65_RS15250	0.29	+0.7
3,310,470	+		DZA65_RS15250	0.41	+1.0
3,310,470	+		DZA65_RS15250	0.41	-0.2
3,310,471	-		DZA65_RS15250	0.42	+0.2
3,310,471	-		DZA65_RS15250	0.42	+0.4
3,310,471	-		DZA65_RS15250	0.42	-0.4
3,310,473	+		DZA65_RS15250	0.42	-0.4
3,310,535	-		DZA65_RS15250	0.53	-0.3
3,310,596	+		DZA65_RS15250	0.64	-0.6
3,310,632	+		DZA65_RS15250	0.70	+0.0
3,310,632	+		DZA65_RS15250	0.70	-0.8
3,310,632	+		DZA65_RS15250	0.70	-0.3
3,310,633	-		DZA65_RS15250	0.70	-0.4
3,310,645	+		DZA65_RS15250	0.73	+0.4
3,310,645	+		DZA65_RS15250	0.73	-1.1
3,310,645	+		DZA65_RS15250	0.73	-1.6
3,310,645	+		DZA65_RS15250	0.73	-0.2
3,310,646	-		DZA65_RS15250	0.73	+0.2
3,310,646	-		DZA65_RS15250	0.73	-0.0
3,310,646	-		DZA65_RS15250	0.73	-0.2
3,310,646	-		DZA65_RS15250	0.73	+0.6
3,310,646	-		DZA65_RS15250	0.73	-1.4
3,310,647	+		DZA65_RS15250	0.73	-1.4
3,310,647	+		DZA65_RS15250	0.73	+0.2
3,310,647	+		DZA65_RS15250	0.73	-1.4
3,310,647	+		DZA65_RS15250	0.73	-1.8
3,310,647	+		DZA65_RS15250	0.73	-2.4
3,310,647	+		DZA65_RS15250	0.73	+0.2
3,310,647	+		DZA65_RS15250	0.73	-0.2
3,310,647	+		DZA65_RS15250	0.73	+1.2
3,310,647	+		DZA65_RS15250	0.73	-1.2
3,310,647	+		DZA65_RS15250	0.73	+2.2
3,310,648	-		DZA65_RS15250	0.73	+0.5
3,310,648	-				+3.4
3,310,648	-		DZA65_RS15250	0.73	+1.3
3,310,648	-		DZA65_RS15250	0.73	-2.6
3,310,648	-		DZA65_RS15250	0.73	-0.2
3,310,648	-		DZA65_RS15250	0.73	-1.8
3,310,648	-		DZA65_RS15250	0.73	+1.9
3,310,648	-		DZA65_RS15250	0.73	-0.1
3,310,648	-		DZA65_RS15250	0.73	+0.2
3,310,686	+		DZA65_RS15250	0.80	+0.2
3,310,686	+		DZA65_RS15250	0.80	-0.2
3,310,686	+		DZA65_RS15250	0.80	-0.3
3,310,686	+		DZA65_RS15250	0.80	+0.7
3,310,686	+		DZA65_RS15250	0.80	-0.1
3,310,687	-		DZA65_RS15250	0.80	-0.8
3,310,687	-		DZA65_RS15250	0.80	-0.9
3,310,687	-		DZA65_RS15250	0.80	-0.3
3,310,689	+		DZA65_RS15250	0.80	-0.2
3,310,689	+		DZA65_RS15250	0.80	+0.1
3,310,689	+		DZA65_RS15250	0.80	-0.7
3,310,689	+		DZA65_RS15250	0.80	-1.8
3,310,689	+		DZA65_RS15250	0.80	-0.3
3,310,689	+		DZA65_RS15250	0.80	+2.2
3,310,689	+		DZA65_RS15250	0.80	+1.0
3,310,690	-		DZA65_RS15250	0.81	-0.4
3,310,690	-		DZA65_RS15250	0.81	+1.2
3,310,690	-		DZA65_RS15250	0.81	+1.9
3,310,690	-		DZA65_RS15250	0.81	+0.6
3,310,690	-		DZA65_RS15250	0.81	-0.5
3,310,690	-		DZA65_RS15250	0.81	-0.7
3,310,690	-		DZA65_RS15250	0.81	-0.3
3,310,690	-		DZA65_RS15250	0.81	-0.2
3,310,735	+		DZA65_RS15250	0.89	-0.8
3,310,735	+		DZA65_RS15250	0.89	-1.9
3,310,735	+		DZA65_RS15250	0.89	-0.3
3,310,735	+		DZA65_RS15250	0.89	-0.8
3,310,735	+		DZA65_RS15250	0.89	+0.6
3,310,735	+		DZA65_RS15250	0.89	+1.8
3,310,735	+		DZA65_RS15250	0.89	-2.4
3,310,735	+		DZA65_RS15250	0.89	+0.8
3,310,735	+		DZA65_RS15250	0.89	+0.2
3,310,735	+		DZA65_RS15250	0.89	+2.3
3,310,735	+		DZA65_RS15250	0.89	-2.6
3,310,735	+		DZA65_RS15250	0.89	-1.0
3,310,735	+		DZA65_RS15250	0.89	+0.9
3,310,736	-		DZA65_RS15250	0.89	+0.1
3,310,736	-		DZA65_RS15250	0.89	-1.7
3,310,736	-		DZA65_RS15250	0.89	-1.2
3,310,736	-		DZA65_RS15250	0.89	+1.2
3,310,796	+				+0.2
3,310,796	+				-1.7
3,310,807	+				-0.7
3,310,807	+				-1.0
3,310,807	+				+0.6
3,310,807	+				+0.6
3,310,807	+				-1.3
3,310,808	-				-0.0
3,310,808	-				+1.5
3,310,808	-				+1.2
3,310,808	-				+0.1
3,310,808	-				-0.8
3,310,808	-				-1.4
3,310,811	+				+0.2
3,310,811	+				-1.2
3,310,811	+				-0.4
3,310,811	+				+1.6
3,310,812	-				-2.0
3,310,812	-				-1.2
3,310,812	-				+0.6
3,310,812	-				+0.6
3,310,812	-				+0.4
3,310,812	-				-0.5
3,310,813	+				+0.4