Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14810

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,227,012	+		DZA65_RS14805	0.37	-0.8
3,227,012	+		DZA65_RS14805	0.37	+0.1
3,227,013	-		DZA65_RS14805	0.37	-0.4
3,227,013	-		DZA65_RS14805	0.37	-1.5
3,227,150	+		DZA65_RS14805	0.52	-1.4
3,227,150	+		DZA65_RS14805	0.52	+0.2
3,227,277	+		DZA65_RS14805	0.66	+0.7
3,227,277	+		DZA65_RS14805	0.66	-2.7
3,227,278	-		DZA65_RS14805	0.66	-1.2
3,227,278	-		DZA65_RS14805	0.66	+0.3
3,227,285	+		DZA65_RS14805	0.67	-0.4
3,227,285	+		DZA65_RS14805	0.67	-2.1
3,227,286	-		DZA65_RS14805	0.67	-1.2
3,227,286	-		DZA65_RS14805	0.67	-0.2
3,227,342	+		DZA65_RS14805	0.73	-3.2
3,227,342	+		DZA65_RS14805	0.73	+0.0
3,227,342	+		DZA65_RS14805	0.73	-1.7
3,227,434	+		DZA65_RS14805	0.83	+2.1
3,227,435	-		DZA65_RS14805	0.83	-1.2
3,227,491	+		DZA65_RS14805	0.89	-0.3
3,227,582	+				+0.0
3,227,583	-				-1.7
3,227,583	-				-1.1
3,227,588	+				+1.7
3,227,588	+				+2.5
3,227,589	-				-1.3
3,227,589	-				-1.3
3,227,614	-				+0.1
3,227,640	-				+0.1
3,227,672	+				-0.4
3,227,680	+				+0.8
3,227,681	-				-2.1
3,227,693	-				-0.1
3,227,693	-				+0.8
3,227,693	-				+0.1
3,227,809	+				-0.3
3,227,809	+				+0.8
3,227,809	+				-0.3
3,227,810	-				-0.5
3,227,810	-				+0.4
3,227,811	+				-0.2
3,227,811	+				-0.5
3,227,811	+				-0.9
3,227,811	+				+0.5
3,227,812	-				-0.5
3,227,812	-				-1.0
3,227,812	-				+0.2
3,227,812	-				-0.4
3,227,817	+				+0.4
3,227,817	+				+0.5
3,227,817	+				-0.7
3,227,818	-				+0.6
3,227,818	-				-1.2
3,227,818	-				+0.3
3,227,818	-				+0.7
3,227,820	+				+1.1
3,227,821	-				-0.5
3,227,922	+				-0.4
3,227,922	+				+0.7
3,227,922	+				+1.8
3,227,922	+				+0.0
3,227,922	+				+0.2
3,227,922	+				+1.2
3,227,923	-				+1.2
3,227,923	-				+0.5
3,227,923	-				-0.1
3,227,926	+				-0.5
3,227,926	+				+1.5
3,227,926	+				+0.2
3,227,926	+				-1.0
3,227,926	+				-0.3
3,227,926	+				+0.3
3,227,926	+				+1.2
3,227,926	+				-0.0
3,227,926	+				-0.3
3,227,926	+				+0.1
3,227,926	+				-1.4
3,227,927	-				-0.0
3,227,927	-				+0.2
3,227,927	-				-0.5
3,227,927	-				+0.1
3,227,927	-				+0.9
3,227,927	-				+0.2
3,227,927	-				-0.1
3,227,927	-				-1.3
3,227,927	-				+0.3
3,227,927	-				-2.1
3,227,927	-				+0.2
3,227,929	-				+0.7
3,227,929	-				+0.2
3,227,929	-				+0.2
3,227,934	+				+0.9
3,227,935	-				+2.1
3,227,935	-				-1.7
3,227,935	-				-0.8
3,227,935	-				+0.2
3,227,935	-				-0.3
3,227,944	+				+0.7
3,227,945	-				-0.5
3,227,961	+				-1.1
3,227,961	+				-0.4
3,227,961	+				-1.3
3,227,961	+				+0.4
3,227,961	+				+0.2
3,227,961	+				-0.7
3,227,961	+				-1.1
3,227,961	+				-0.1
3,227,961	+				-0.4
3,227,961	+				+0.1
3,227,962	-				+0.0
3,227,962	-				-0.5
3,227,962	-				+2.5
3,227,962	-				+0.5
3,227,962	-				-1.7
3,227,962	-				-1.0
3,227,962	-				+0.7
3,227,962	-				+1.4
3,227,976	+				+0.6
3,227,976	+				-0.3
3,227,976	+				-1.5
3,227,977	-				-1.0
3,227,977	-				+1.0
3,227,977	-				-1.1
3,228,060	+				-1.5
3,228,061	-				+0.5
3,228,073	-				+0.5
3,228,177	+		DZA65_RS14810	0.16	+0.1
3,228,177	+		DZA65_RS14810	0.16	-1.0
3,228,178	-		DZA65_RS14810	0.16	+0.2
3,228,178	-		DZA65_RS14810	0.16	-0.3
3,228,178	-		DZA65_RS14810	0.16	-1.8
3,228,179	+		DZA65_RS14810	0.16	-0.9
3,228,179	+		DZA65_RS14810	0.16	-0.6
3,228,179	+		DZA65_RS14810	0.16	-2.7
3,228,179	+		DZA65_RS14810	0.16	+0.5
3,228,180	-		DZA65_RS14810	0.17	+1.5
3,228,180	-		DZA65_RS14810	0.17	-0.5
3,228,180	-		DZA65_RS14810	0.17	-0.3
3,228,180	-		DZA65_RS14810	0.17	+0.1
3,228,180	-		DZA65_RS14810	0.17	+0.5
3,228,180	-		DZA65_RS14810	0.17	-1.3
3,228,309	+		DZA65_RS14810	0.26	-0.1
3,228,310	-		DZA65_RS14810	0.27	-1.1
3,228,310	-		DZA65_RS14810	0.27	-1.2
3,228,310	-		DZA65_RS14810	0.27	-0.5
3,228,362	-		DZA65_RS14810	0.30	-0.3
3,228,362	-		DZA65_RS14810	0.30	-1.0
3,228,366	+		DZA65_RS14810	0.31	+1.0
3,228,366	+		DZA65_RS14810	0.31	-0.1
3,228,366	+		DZA65_RS14810	0.31	-0.3
3,228,366	+		DZA65_RS14810	0.31	+1.2
3,228,366	+		DZA65_RS14810	0.31	+1.3
3,228,367	-		DZA65_RS14810	0.31	-0.2
3,228,367	-		DZA65_RS14810	0.31	+0.3
3,228,367	-		DZA65_RS14810	0.31	-0.6
3,228,367	-		DZA65_RS14810	0.31	+0.1
3,228,367	-		DZA65_RS14810	0.31	-0.8
3,228,367	-		DZA65_RS14810	0.31	+1.0
3,228,367	-		DZA65_RS14810	0.31	+1.5
3,228,369	+		DZA65_RS14810	0.31	+0.1
3,228,369	+		DZA65_RS14810	0.31	-0.6
3,228,550	+		DZA65_RS14810	0.45	-1.2
3,228,551	-		DZA65_RS14810	0.45	-1.2
3,228,563	-		DZA65_RS14810	0.46	-2.2
3,228,672	+		DZA65_RS14810	0.54	-0.5
3,228,759	+		DZA65_RS14810	0.61	-0.0
3,228,760	-		DZA65_RS14810	0.61	-1.1
3,228,791	+		DZA65_RS14810	0.63	-1.2
3,228,792	-		DZA65_RS14810	0.63	-1.5
3,228,871	+		DZA65_RS14810	0.70	+1.0
3,228,871	+		DZA65_RS14810	0.70	-1.1
3,228,871	+		DZA65_RS14810	0.70	-1.1
3,228,872	-		DZA65_RS14810	0.70	+0.5
3,228,872	-		DZA65_RS14810	0.70	-0.9
3,228,872	-		DZA65_RS14810	0.70	+1.8
3,228,962	+				+2.8
3,228,963	-		DZA65_RS14810	0.77	-0.8
3,228,963	-		DZA65_RS14810	0.77	+1.5
3,228,963	-		DZA65_RS14810	0.77	+0.3
3,228,986	-		DZA65_RS14810	0.78	+0.8
3,229,160	+				-0.2
3,229,160	+				-2.3
3,229,193	-				-1.1
3,229,256	-				-0.8
3,229,276	+				-1.8
3,229,277	-				-1.3
3,229,277	-				+0.7
3,229,314	+				-1.0
3,229,330	-				-0.4
3,229,548	+				-0.3
3,229,549	-				-0.4
3,229,623	-				-2.0
3,229,623	-				+0.6
3,229,689	+				-1.1
3,229,689	+				+0.7
3,229,689	+				+0.9
3,229,689	+				-0.5
3,229,689	+				-0.9
3,229,690	-				+0.5
3,229,690	-				+0.2
3,229,690	-				-1.0
3,229,690	-				+0.5
3,229,690	-				-2.3
3,229,690	-				-0.5
3,229,715	+				+0.5
3,229,731	-				-1.3
3,229,742	+				-0.5
3,229,742	+				-1.0
3,229,743	-				-1.1
3,229,743	-				+0.4
3,229,849	+		DZA65_RS14820	0.20	-0.8
3,229,849	+		DZA65_RS14820	0.20	-0.6
3,229,849	+		DZA65_RS14820	0.20	+1.8
3,229,857	+		DZA65_RS14820	0.22	+1.0
3,229,857	+		DZA65_RS14820	0.22	-0.3
3,229,858	-		DZA65_RS14820	0.22	-0.7
3,229,858	-		DZA65_RS14820	0.22	+0.1
3,229,928	+		DZA65_RS14820	0.33	-1.7
3,229,928	+		DZA65_RS14820	0.33	+1.2
3,229,929	-				-0.2
3,229,948	+		DZA65_RS14820	0.36	-0.2
3,229,949	-		DZA65_RS14820	0.36	+0.8
3,229,998	-		DZA65_RS14820	0.44	+0.0
3,230,034	-		DZA65_RS14820	0.50	+0.8
3,230,034	-		DZA65_RS14820	0.50	+1.5
3,230,034	-		DZA65_RS14820	0.50	+0.0
3,230,063	+		DZA65_RS14820	0.54	+3.9
3,230,064	-		DZA65_RS14820	0.54	+0.1
3,230,132	-		DZA65_RS14820	0.65	+0.5
3,230,136	+		DZA65_RS14820	0.66	-1.1
3,230,136	+		DZA65_RS14820	0.66	-0.3
3,230,136	+		DZA65_RS14820	0.66	+0.7
3,230,136	+		DZA65_RS14820	0.66	-0.3