Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14605

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,177,599	+		DZA65_RS14600	0.15	-0.9
3,177,599	+		DZA65_RS14600	0.15	-0.4
3,177,599	+		DZA65_RS14600	0.15	+0.7
3,177,651	+		DZA65_RS14600	0.20	-0.5
3,177,713	+		DZA65_RS14600	0.27	+1.3
3,177,713	+		DZA65_RS14600	0.27	-0.1
3,177,713	+		DZA65_RS14600	0.27	-0.1
3,177,713	+		DZA65_RS14600	0.27	-0.8
3,177,714	-		DZA65_RS14600	0.27	-0.8
3,177,771	-		DZA65_RS14600	0.33	-1.1
3,177,778	-		DZA65_RS14600	0.33	-0.5
3,177,778	-		DZA65_RS14600	0.33	+1.4
3,177,790	+		DZA65_RS14600	0.35	-0.2
3,177,791	-		DZA65_RS14600	0.35	+0.0
3,177,791	-		DZA65_RS14600	0.35	-0.8
3,177,793	+		DZA65_RS14600	0.35	-1.3
3,177,793	+		DZA65_RS14600	0.35	-0.6
3,177,793	+		DZA65_RS14600	0.35	+0.2
3,177,793	+		DZA65_RS14600	0.35	+1.8
3,177,793	+		DZA65_RS14600	0.35	+0.5
3,177,793	+		DZA65_RS14600	0.35	-1.1
3,177,793	+		DZA65_RS14600	0.35	-0.2
3,177,794	-		DZA65_RS14600	0.35	-0.2
3,177,794	-		DZA65_RS14600	0.35	-0.5
3,177,794	-		DZA65_RS14600	0.35	-1.1
3,177,794	-		DZA65_RS14600	0.35	-1.7
3,177,794	-		DZA65_RS14600	0.35	-2.3
3,177,794	-		DZA65_RS14600	0.35	+0.5
3,177,794	-		DZA65_RS14600	0.35	+0.8
3,177,824	+		DZA65_RS14600	0.38	-1.6
3,177,825	-		DZA65_RS14600	0.38	-1.5
3,177,838	+		DZA65_RS14600	0.39	-0.7
3,177,852	-		DZA65_RS14600	0.41	+1.0
3,177,858	+		DZA65_RS14600	0.41	-2.3
3,177,858	+		DZA65_RS14600	0.41	+1.7
3,177,858	+		DZA65_RS14600	0.41	+1.5
3,177,858	+		DZA65_RS14600	0.41	+0.2
3,177,858	+		DZA65_RS14600	0.41	+0.3
3,177,858	+		DZA65_RS14600	0.41	+1.2
3,177,859	-		DZA65_RS14600	0.42	-0.2
3,177,859	-		DZA65_RS14600	0.42	+0.5
3,177,859	-		DZA65_RS14600	0.42	+0.5
3,177,859	-				-0.1
3,177,861	+		DZA65_RS14600	0.42	-0.5
3,177,873	+		DZA65_RS14600	0.43	+0.2
3,177,873	+		DZA65_RS14600	0.43	+0.5
3,177,874	-		DZA65_RS14600	0.43	+0.9
3,177,985	+		DZA65_RS14600	0.54	+0.3
3,177,986	-		DZA65_RS14600	0.55	+1.0
3,177,991	+		DZA65_RS14600	0.55	-1.8
3,177,992	-		DZA65_RS14600	0.55	+2.7
3,177,992	-		DZA65_RS14600	0.55	+0.0
3,177,992	-		DZA65_RS14600	0.55	-0.8
3,177,992	-		DZA65_RS14600	0.55	+0.1
3,178,072	-		DZA65_RS14600	0.63	-0.2
3,178,072	-				+0.5
3,178,102	-		DZA65_RS14600	0.66	-0.7
3,178,113	+		DZA65_RS14600	0.67	-0.1
3,178,114	-		DZA65_RS14600	0.68	-0.1
3,178,153	-		DZA65_RS14600	0.72	-1.4
3,178,159	-		DZA65_RS14600	0.72	-0.3
3,178,173	+		DZA65_RS14600	0.74	-0.4
3,178,173	+		DZA65_RS14600	0.74	+0.5
3,178,173	+		DZA65_RS14600	0.74	-0.4
3,178,173	+		DZA65_RS14600	0.74	-0.8
3,178,173	+		DZA65_RS14600	0.74	+0.7
3,178,174	-		DZA65_RS14600	0.74	-1.0
3,178,174	-		DZA65_RS14600	0.74	+0.8
3,178,174	-		DZA65_RS14600	0.74	-1.4
3,178,174	-		DZA65_RS14600	0.74	-0.7
3,178,174	-		DZA65_RS14600	0.74	+0.2
3,178,174	-		DZA65_RS14600	0.74	-2.5
3,178,174	-		DZA65_RS14600	0.74	+1.4
3,178,209	+		DZA65_RS14600	0.77	-1.2
3,178,210	-		DZA65_RS14600	0.77	-0.5
3,178,239	-		DZA65_RS14600	0.80	+0.7
3,178,239	-		DZA65_RS14600	0.80	-0.5
3,178,239	-		DZA65_RS14600	0.80	+0.8
3,178,324	-		DZA65_RS14600	0.89	-0.1
3,178,334	-				+0.5
3,178,431	+				-0.2
3,178,432	-				-0.5
3,178,434	+				+0.2
3,178,497	+				-0.2
3,178,498	-				-0.3
3,178,498	-				-2.3
3,178,498	-				-0.9
3,178,498	-				+2.1
3,178,499	+				-0.7
3,178,500	-				-1.8
3,178,518	-				+0.2
3,178,518	-				+0.5
3,178,540	-				+0.5
3,178,546	-				+1.4
3,178,546	-				-1.0
3,178,546	-				+0.9
3,178,547	+				+0.1
3,178,548	-				+2.5
3,178,548	-				-1.1
3,178,597	+				-2.0
3,178,598	-				-0.0
3,178,605	+				+2.5
3,178,606	-				-0.9
3,178,606	-				+2.3
3,178,638	-				+0.2
3,178,713	-		DZA65_RS14605	0.15	+0.2
3,178,717	+		DZA65_RS14605	0.15	-1.5
3,178,718	-		DZA65_RS14605	0.15	-0.2
3,178,718	-				+2.8
3,178,718	-		DZA65_RS14605	0.15	-1.1
3,178,722	+		DZA65_RS14605	0.16	-1.5
3,178,722	+		DZA65_RS14605	0.16	-2.3
3,178,723	-		DZA65_RS14605	0.16	-0.5
3,178,723	-		DZA65_RS14605	0.16	+0.0
3,178,723	-		DZA65_RS14605	0.16	+0.5
3,178,723	-		DZA65_RS14605	0.16	-0.1
3,178,724	+		DZA65_RS14605	0.16	-1.1
3,178,725	-		DZA65_RS14605	0.16	+0.3
3,178,725	-		DZA65_RS14605	0.16	-0.2
3,178,725	-		DZA65_RS14605	0.16	-1.2
3,178,725	-		DZA65_RS14605	0.16	-0.7
3,178,771	-		DZA65_RS14605	0.20	-0.5
3,178,771	-		DZA65_RS14605	0.20	-3.0
3,178,771	-		DZA65_RS14605	0.20	+0.5
3,178,771	-		DZA65_RS14605	0.20	-0.5
3,178,771	-		DZA65_RS14605	0.20	-0.7
3,178,773	+		DZA65_RS14605	0.20	+0.3
3,178,827	+				-0.5
3,178,827	+		DZA65_RS14605	0.25	-0.8
3,178,828	-		DZA65_RS14605	0.25	-0.0
3,178,847	+		DZA65_RS14605	0.26	+0.7
3,178,847	+		DZA65_RS14605	0.26	-0.1
3,178,864	+		DZA65_RS14605	0.28	+0.3
3,178,864	+		DZA65_RS14605	0.28	-0.5
3,178,864	+		DZA65_RS14605	0.28	+0.5
3,178,865	-		DZA65_RS14605	0.28	-0.4
3,178,865	-		DZA65_RS14605	0.28	-0.2
3,178,865	-		DZA65_RS14605	0.28	-3.0
3,178,865	-		DZA65_RS14605	0.28	-0.6
3,178,871	+		DZA65_RS14605	0.28	+0.9
3,178,871	+		DZA65_RS14605	0.28	-0.1
3,178,871	+		DZA65_RS14605	0.28	-1.1
3,178,871	+		DZA65_RS14605	0.28	+0.9
3,178,903	+		DZA65_RS14605	0.31	+1.3
3,178,903	+		DZA65_RS14605	0.31	-0.5
3,178,904	-		DZA65_RS14605	0.31	+0.5
3,178,906	+		DZA65_RS14605	0.31	-0.4
3,178,906	+		DZA65_RS14605	0.31	-0.2
3,178,906	+		DZA65_RS14605	0.31	+0.2
3,178,907	-		DZA65_RS14605	0.31	+1.1
3,178,907	-		DZA65_RS14605	0.31	+1.3
3,178,994	+		DZA65_RS14605	0.39	-0.5
3,178,995	-		DZA65_RS14605	0.39	-0.4
3,178,995	-		DZA65_RS14605	0.39	-0.2
3,178,995	-		DZA65_RS14605	0.39	+0.5
3,178,995	-		DZA65_RS14605	0.39	+0.5
3,178,995	-		DZA65_RS14605	0.39	+1.1
3,178,999	+		DZA65_RS14605	0.39	-0.6
3,179,000	-		DZA65_RS14605	0.39	+0.5
3,179,027	+		DZA65_RS14605	0.41	-0.0
3,179,027	+		DZA65_RS14605	0.41	-0.4
3,179,028	-		DZA65_RS14605	0.41	+0.7
3,179,028	-		DZA65_RS14605	0.41	-1.8
3,179,028	-		DZA65_RS14605	0.41	-0.5
3,179,043	+		DZA65_RS14605	0.43	-0.4
3,179,058	+		DZA65_RS14605	0.44	-0.7
3,179,058	+		DZA65_RS14605	0.44	-1.3
3,179,059	-		DZA65_RS14605	0.44	-0.2
3,179,059	-		DZA65_RS14605	0.44	+0.5
3,179,059	-		DZA65_RS14605	0.44	-0.2
3,179,065	-		DZA65_RS14605	0.44	-1.1
3,179,065	-		DZA65_RS14605	0.44	-1.8
3,179,065	-		DZA65_RS14605	0.44	+0.4
3,179,065	-		DZA65_RS14605	0.44	+1.7
3,179,065	-		DZA65_RS14605	0.44	-0.5
3,179,065	-		DZA65_RS14605	0.44	-0.9
3,179,089	+		DZA65_RS14605	0.46	-1.8
3,179,090	-		DZA65_RS14605	0.47	+0.5
3,179,090	-		DZA65_RS14605	0.47	-0.8
3,179,090	-		DZA65_RS14605	0.47	-0.1
3,179,090	-		DZA65_RS14605	0.47	-0.7
3,179,133	+		DZA65_RS14605	0.50	-0.5
3,179,133	+		DZA65_RS14605	0.50	+0.5
3,179,134	-				+3.3
3,179,134	-		DZA65_RS14605	0.50	-1.1
3,179,146	-		DZA65_RS14605	0.51	-1.1
3,179,167	-		DZA65_RS14605	0.53	-1.3
3,179,178	+		DZA65_RS14605	0.54	-2.3
3,179,178	+		DZA65_RS14605	0.54	-0.9
3,179,179	-		DZA65_RS14605	0.54	-1.2
3,179,191	-		DZA65_RS14605	0.55	-1.8
3,179,231	-		DZA65_RS14605	0.58	-0.2
3,179,241	+		DZA65_RS14605	0.59	+1.7
3,179,252	-		DZA65_RS14605	0.60	-0.3
3,179,252	-		DZA65_RS14605	0.60	+0.5
3,179,256	-		DZA65_RS14605	0.60	+0.2
3,179,256	-		DZA65_RS14605	0.60	+0.8
3,179,271	+		DZA65_RS14605	0.62	-0.5
3,179,273	+		DZA65_RS14605	0.62	+0.0
3,179,287	+		DZA65_RS14605	0.63	-1.5
3,179,306	-		DZA65_RS14605	0.65	-0.1
3,179,362	-		DZA65_RS14605	0.69	-0.7
3,179,364	+		DZA65_RS14605	0.70	+0.2
3,179,364	+		DZA65_RS14605	0.70	+1.5
3,179,364	+		DZA65_RS14605	0.70	+0.2
3,179,369	-		DZA65_RS14605	0.70	-0.6
3,179,403	+		DZA65_RS14605	0.73	+0.5
3,179,403	+		DZA65_RS14605	0.73	+0.2
3,179,407	-		DZA65_RS14605	0.73	-1.3
3,179,439	+		DZA65_RS14605	0.76	+0.3
3,179,458	-		DZA65_RS14605	0.77	+0.1
3,179,458	-		DZA65_RS14605	0.77	-1.8
3,179,461	+		DZA65_RS14605	0.78	-0.3
3,179,461	+		DZA65_RS14605	0.78	+0.3
3,179,462	-		DZA65_RS14605	0.78	+0.4
3,179,462	-		DZA65_RS14605	0.78	+1.5
3,179,462	-		DZA65_RS14605	0.78	-0.4
3,179,462	-		DZA65_RS14605	0.78	-1.5
3,179,462	-		DZA65_RS14605	0.78	-1.9
3,179,462	-		DZA65_RS14605	0.78	+0.6
3,179,489	-		DZA65_RS14605	0.80	-0.9
3,179,489	-		DZA65_RS14605	0.80	-1.4
3,179,489	-		DZA65_RS14605	0.80	-0.3
3,179,491	+		DZA65_RS14605	0.80	+0.5
3,179,525	+		DZA65_RS14605	0.83	+0.7
3,179,538	+		DZA65_RS14605	0.84	-0.7
3,179,538	+		DZA65_RS14605	0.84	-0.8
3,179,538	+		DZA65_RS14605	0.84	+0.0
3,179,538	+		DZA65_RS14605	0.84	-1.7
3,179,538	+		DZA65_RS14605	0.84	+1.8
3,179,538	+		DZA65_RS14605	0.84	+3.2
3,179,538	+		DZA65_RS14605	0.84	+0.5
3,179,539	-		DZA65_RS14605	0.84	-0.5
3,179,540	+		DZA65_RS14605	0.84	+1.1
3,179,540	+				-0.8
3,179,540	+		DZA65_RS14605	0.84	+0.8
3,179,540	+		DZA65_RS14605	0.84	-0.5
3,179,614	+				-0.2
3,179,614	+				+0.8
3,179,614	+				-1.5
3,179,645	+				-0.8
3,179,645	+				+0.2
3,179,646	-				-0.5
3,179,646	-				-0.8
3,179,647	+				+0.5
3,179,647	+				+0.8
3,179,647	+				+0.1
3,179,647	+				-2.2
3,179,647	+				+0.1
3,179,647	+				-2.3
3,179,648	-				+0.5
3,179,648	-				+0.2
3,179,648	-				+1.0
3,179,648	-				-1.5
3,179,648	-				+1.1
3,179,657	+				+0.0
3,179,657	+				-0.5
3,179,657	+				-0.5
3,179,657	+				-0.0
3,179,657	+				+1.0
3,179,657	+				-0.5
3,179,657	+				+0.5
3,179,657	+				+0.9
3,179,657	+				+0.1
3,179,658	-				+0.5
3,179,658	-				-1.2
3,179,658	-				-0.1
3,179,658	-				+0.6
3,179,658	-				-0.5
3,179,658	-				+0.2
3,179,660	-				-0.2
3,179,660	-				+0.8
3,179,660	-				+1.7
3,179,660	-				-0.8
3,179,749	-				-1.1
3,179,749	-				-0.3
3,179,757	+				+0.9
3,179,757	+				+2.3
3,179,757	+				-1.5
3,179,757	+				+1.6
3,179,757	+				-1.2
3,179,758	-				+1.1
3,179,758	-				+1.3
3,179,758	-				-0.7
3,179,758	-				+0.6
3,179,760	+				-1.5
3,179,760	+				+0.2
3,179,760	+				+0.3
3,179,760	+				-0.0
3,179,761	-				+0.5
3,179,761	-				-1.3
3,179,761	-				+0.1
3,179,761	-				-0.7
3,179,761	-				-0.1
3,179,761	-				+0.7
3,179,761	-				-0.2
3,179,763	+				-0.8
3,179,763	+				-3.2
3,179,764	-				+0.2
3,179,764	-				+0.6
3,179,764	-				-3.1
3,179,764	-				-1.8
3,179,786	+				+1.6
3,179,786	+				+1.7
3,179,787	-				-2.0
3,179,885	+				+0.3
3,179,907	+				-0.5
3,179,907	+				+0.8
3,179,911	+				+1.5
3,179,911	+				-1.1
3,179,917	+				-1.8
3,179,917	+				+0.1
3,179,917	+				-2.3
3,179,917	+				+0.2
3,179,918	-				+0.3
3,179,918	-				+1.8
3,179,918	-				-1.1
3,179,955	+				-0.2
3,179,956	-				-0.5
3,179,956	-				+0.3
3,179,979	-				-0.3
3,180,024	+		DZA65_RS14610	0.10	-0.5
3,180,024	+		DZA65_RS14610	0.10	+1.0
3,180,024	+		DZA65_RS14610	0.10	+0.8
3,180,024	+		DZA65_RS14610	0.10	-0.5
3,180,024	+		DZA65_RS14610	0.10	-0.1
3,180,024	+		DZA65_RS14610	0.10	-0.7
3,180,024	+		DZA65_RS14610	0.10	-0.4
3,180,025	-		DZA65_RS14610	0.10	-1.1
3,180,025	-		DZA65_RS14610	0.10	-1.5
3,180,026	+		DZA65_RS14610	0.11	+0.0
3,180,027	-		DZA65_RS14610	0.11	-1.9
3,180,027	-		DZA65_RS14610	0.11	+0.8
3,180,027	-		DZA65_RS14610	0.11	-1.8
3,180,027	-		DZA65_RS14610	0.11	-2.3
3,180,029	-		DZA65_RS14610	0.11	+0.3
3,180,029	-		DZA65_RS14610	0.11	+1.9
3,180,029	-		DZA65_RS14610	0.11	-0.2
3,180,075	+		DZA65_RS14610	0.16	+1.2
3,180,076	-		DZA65_RS14610	0.16	+1.1
3,180,076	-		DZA65_RS14610	0.16	-0.2
3,180,076	-		DZA65_RS14610	0.16	-0.2
3,180,076	-		DZA65_RS14610	0.16	-1.8
3,180,076	-		DZA65_RS14610	0.16	+1.1
3,180,076	-		DZA65_RS14610	0.16	-1.3
3,180,090	-		DZA65_RS14610	0.18	-0.1
3,180,090	-		DZA65_RS14610	0.18	-0.6
3,180,090	-		DZA65_RS14610	0.18	-0.5
3,180,201	+		DZA65_RS14610	0.30	-0.7
3,180,201	+		DZA65_RS14610	0.30	+0.1
3,180,202	-				+0.5
3,180,202	-		DZA65_RS14610	0.30	+0.8
3,180,202	-		DZA65_RS14610	0.30	+0.8
3,180,202	-		DZA65_RS14610	0.30	+1.3
3,180,202	-		DZA65_RS14610	0.30	+0.7
3,180,202	-		DZA65_RS14610	0.30	-0.4
3,180,202	-		DZA65_RS14610	0.30	-0.8
3,180,202	-		DZA65_RS14610	0.30	+1.2
3,180,257	+		DZA65_RS14610	0.36	+2.3
3,180,310	+		DZA65_RS14610	0.42	+0.1
3,180,310	+		DZA65_RS14610	0.42	+0.6
3,180,322	+		DZA65_RS14610	0.43	+0.8
3,180,323	-		DZA65_RS14610	0.43	-2.3
3,180,341	+		DZA65_RS14610	0.45	-0.2
3,180,341	+		DZA65_RS14610	0.45	-1.3
3,180,393	+		DZA65_RS14610	0.51	+1.3
3,180,394	-		DZA65_RS14610	0.51	-0.4
3,180,394	-		DZA65_RS14610	0.51	+0.5
3,180,394	-		DZA65_RS14610	0.51	-2.2
3,180,394	-		DZA65_RS14610	0.51	-0.2
3,180,394	-		DZA65_RS14610	0.51	+0.1
3,180,403	+		DZA65_RS14610	0.52	+0.2
3,180,403	+		DZA65_RS14610	0.52	-1.1
3,180,403	+		DZA65_RS14610	0.52	+0.5
3,180,403	+		DZA65_RS14610	0.52	+1.4
3,180,403	+		DZA65_RS14610	0.52	-2.3
3,180,403	+		DZA65_RS14610	0.52	-0.2
3,180,403	+		DZA65_RS14610	0.52	-1.0
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3,180,404	-		DZA65_RS14610	0.52	-0.7
3,180,404	-		DZA65_RS14610	0.52	-0.0
3,180,404	-		DZA65_RS14610	0.52	+2.5
3,180,404	-		DZA65_RS14610	0.52	+1.1
3,180,404	-		DZA65_RS14610	0.52	-0.3
3,180,443	-		DZA65_RS14610	0.57	-0.8
3,180,461	+		DZA65_RS14610	0.59	-0.1
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3,180,491	+		DZA65_RS14610	0.62	-0.5
3,180,515	+		DZA65_RS14610	0.65	+0.9
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3,180,516	-		DZA65_RS14610	0.65	-0.8
3,180,516	-		DZA65_RS14610	0.65	-1.1
3,180,516	-		DZA65_RS14610	0.65	-0.3
3,180,516	-		DZA65_RS14610	0.65	+0.5
3,180,516	-		DZA65_RS14610	0.65	+0.4
3,180,566	+		DZA65_RS14610	0.70	-0.6
3,180,578	+		DZA65_RS14610	0.72	-1.3
3,180,578	+		DZA65_RS14610	0.72	+0.7
3,180,578	+		DZA65_RS14610	0.72	-1.3
3,180,578	+		DZA65_RS14610	0.72	+0.0
3,180,578	+		DZA65_RS14610	0.72	+0.7
3,180,578	+		DZA65_RS14610	0.72	+0.9
3,180,579	-		DZA65_RS14610	0.72	+1.7
3,180,579	-		DZA65_RS14610	0.72	-1.3
3,180,632	+		DZA65_RS14610	0.78	+1.5
3,180,632	+		DZA65_RS14610	0.78	+0.3
3,180,633	-		DZA65_RS14610	0.78	-0.5
3,180,633	-		DZA65_RS14610	0.78	-0.0
3,180,633	-		DZA65_RS14610	0.78	+0.5
3,180,635	+		DZA65_RS14610	0.78	+0.7
3,180,636	-		DZA65_RS14610	0.78	-1.2
3,180,636	-		DZA65_RS14610	0.78	+0.2
3,180,636	-		DZA65_RS14610	0.78	-1.6
3,180,636	-		DZA65_RS14610	0.78	+0.1
3,180,636	-		DZA65_RS14610	0.78	-1.0
3,180,696	+		DZA65_RS14610	0.85	-0.4
3,180,697	-		DZA65_RS14610	0.85	+2.1