Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14125

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,031,034	+		DZA65_RS14120	0.31	+3.9
3,031,034	+		DZA65_RS14120	0.31	-0.7
3,031,035	-		DZA65_RS14120	0.31	+1.3
3,031,035	-		DZA65_RS14120	0.31	-1.7
3,031,038	+		DZA65_RS14120	0.31	-1.2
3,031,038	+		DZA65_RS14120	0.31	-1.3
3,031,038	+		DZA65_RS14120	0.31	-0.8
3,031,038	+		DZA65_RS14120	0.31	+2.4
3,031,038	+		DZA65_RS14120	0.31	+1.7
3,031,038	+		DZA65_RS14120	0.31	-0.7
3,031,038	+		DZA65_RS14120	0.31	-0.3
3,031,038	+		DZA65_RS14120	0.31	-0.8
3,031,038	+		DZA65_RS14120	0.31	-0.5
3,031,039	-		DZA65_RS14120	0.31	+0.6
3,031,039	-		DZA65_RS14120	0.31	-0.4
3,031,039	-		DZA65_RS14120	0.31	-1.1
3,031,039	-		DZA65_RS14120	0.31	-0.2
3,031,039	-		DZA65_RS14120	0.31	-0.2
3,031,039	-		DZA65_RS14120	0.31	+0.7
3,031,039	-		DZA65_RS14120	0.31	-2.3
3,031,039	-		DZA65_RS14120	0.31	-1.3
3,031,039	-		DZA65_RS14120	0.31	-2.1
3,031,039	-		DZA65_RS14120	0.31	-0.8
3,031,039	-		DZA65_RS14120	0.31	-1.8
3,031,039	-		DZA65_RS14120	0.31	-0.4
3,031,039	-		DZA65_RS14120	0.31	-2.3
3,031,039	-		DZA65_RS14120	0.31	+1.0
3,031,039	-		DZA65_RS14120	0.31	+1.3
3,031,109	+		DZA65_RS14120	0.37	-1.2
3,031,109	+		DZA65_RS14120	0.37	-0.7
3,031,118	+		DZA65_RS14120	0.38	+0.1
3,031,118	+		DZA65_RS14120	0.38	-2.1
3,031,118	+		DZA65_RS14120	0.38	+0.3
3,031,119	-		DZA65_RS14120	0.38	+0.7
3,031,119	-		DZA65_RS14120	0.38	+1.1
3,031,123	-		DZA65_RS14120	0.38	+0.2
3,031,146	+		DZA65_RS14120	0.40	+2.0
3,031,156	-		DZA65_RS14120	0.41	-0.8
3,031,156	-		DZA65_RS14120	0.41	-0.8
3,031,184	+		DZA65_RS14120	0.43	-0.1
3,031,184	+		DZA65_RS14120	0.43	+0.1
3,031,184	+		DZA65_RS14120	0.43	+0.2
3,031,187	+		DZA65_RS14120	0.43	+0.3
3,031,187	+		DZA65_RS14120	0.43	+0.9
3,031,188	-		DZA65_RS14120	0.43	-0.6
3,031,188	-		DZA65_RS14120	0.43	+0.8
3,031,188	-		DZA65_RS14120	0.43	-0.1
3,031,201	-		DZA65_RS14120	0.44	+1.0
3,031,253	+		DZA65_RS14120	0.48	+0.2
3,031,254	-		DZA65_RS14120	0.48	+0.5
3,031,322	+		DZA65_RS14120	0.54	+0.0
3,031,331	+		DZA65_RS14120	0.54	+3.7
3,031,331	+		DZA65_RS14120	0.54	-0.6
3,031,332	-		DZA65_RS14120	0.54	+0.3
3,031,332	-		DZA65_RS14120	0.54	-1.3
3,031,332	-		DZA65_RS14120	0.54	+0.7
3,031,332	-		DZA65_RS14120	0.54	+0.6
3,031,369	+		DZA65_RS14120	0.57	-0.4
3,031,376	+		DZA65_RS14120	0.58	+0.1
3,031,377	-		DZA65_RS14120	0.58	+1.0
3,031,377	-		DZA65_RS14120	0.58	-0.8
3,031,377	-		DZA65_RS14120	0.58	-0.8
3,031,394	-		DZA65_RS14120	0.59	+0.2
3,031,493	+		DZA65_RS14120	0.67	+1.9
3,031,494	-		DZA65_RS14120	0.67	+0.6
3,031,538	+		DZA65_RS14120	0.70	+0.0
3,031,539	-		DZA65_RS14120	0.70	-0.8
3,031,560	+		DZA65_RS14120	0.72	-0.5
3,031,560	+		DZA65_RS14120	0.72	-1.1
3,031,603	+		DZA65_RS14120	0.75	-0.3
3,031,629	+		DZA65_RS14120	0.78	+0.5
3,031,630	-		DZA65_RS14120	0.78	-0.4
3,031,630	-		DZA65_RS14120	0.78	+2.5
3,031,630	-		DZA65_RS14120	0.78	+2.5
3,031,630	-		DZA65_RS14120	0.78	+1.3
3,031,630	-		DZA65_RS14120	0.78	-0.1
3,031,631	+		DZA65_RS14120	0.78	+0.2
3,031,631	+		DZA65_RS14120	0.78	+0.5
3,031,631	+		DZA65_RS14120	0.78	+0.1
3,031,631	+		DZA65_RS14120	0.78	+1.8
3,031,631	+		DZA65_RS14120	0.78	+0.3
3,031,631	+		DZA65_RS14120	0.78	+1.6
3,031,631	+		DZA65_RS14120	0.78	+1.0
3,031,631	+		DZA65_RS14120	0.78	+0.3
3,031,631	+		DZA65_RS14120	0.78	-2.3
3,031,631	+		DZA65_RS14120	0.78	+0.3
3,031,631	+		DZA65_RS14120	0.78	-0.9
3,031,631	+		DZA65_RS14120	0.78	+0.6
3,031,631	+		DZA65_RS14120	0.78	+0.0
3,031,632	-		DZA65_RS14120	0.78	-0.7
3,031,632	-		DZA65_RS14120	0.78	-2.0
3,031,632	-		DZA65_RS14120	0.78	+1.1
3,031,632	-		DZA65_RS14120	0.78	-0.3
3,031,632	-		DZA65_RS14120	0.78	+0.8
3,031,632	-		DZA65_RS14120	0.78	+1.2
3,031,694	+		DZA65_RS14120	0.83	+1.8
3,031,694	+		DZA65_RS14120	0.83	-2.0
3,031,695	-		DZA65_RS14120	0.83	-0.3
3,031,745	+		DZA65_RS14120	0.87	+1.5
3,031,803	-				-0.9
3,031,828	-				-0.8
3,031,842	+				-0.1
3,031,842	+				-0.3
3,031,842	+				+1.0
3,031,842	+				+0.3
3,031,843	-				+0.1
3,031,843	-				-2.0
3,031,843	-				-1.5
3,031,843	-				-0.5
3,031,857	+				-0.9
3,031,858	-				+1.6
3,031,910	+				+0.2
3,031,910	+				-0.4
3,031,910	+				-0.6
3,031,910	+				+0.0
3,031,914	+				-2.1
3,031,922	+				-1.0
3,031,923	-				-0.8
3,031,969	+				+0.1
3,031,970	-				+0.5
3,031,970	-				+1.9
3,031,970	-				+0.0
3,031,970	-				+0.4
3,031,970	-				+0.4
3,031,987	+				-1.8
3,031,987	+				+0.8
3,031,987	+				+0.5
3,031,987	+				+0.2
3,031,987	+				-1.3
3,031,987	+				+1.6
3,031,988	-				-1.7
3,031,988	-				-0.8
3,031,988	-				+0.2
3,031,988	-				+1.1
3,031,988	-				-0.8
3,032,029	+				+0.8
3,032,030	-				-0.3
3,032,030	-				-1.5
3,032,112	-				+0.5
3,032,112	-				-0.2
3,032,147	+		DZA65_RS14125	0.13	-0.3
3,032,220	-		DZA65_RS14125	0.18	+0.0
3,032,220	-		DZA65_RS14125	0.18	+1.1
3,032,253	-		DZA65_RS14125	0.21	+0.4
3,032,253	-		DZA65_RS14125	0.21	-0.2
3,032,263	+		DZA65_RS14125	0.22	-2.7
3,032,264	-		DZA65_RS14125	0.22	+0.5
3,032,306	+		DZA65_RS14125	0.25	-0.8
3,032,307	-		DZA65_RS14125	0.25	+0.6
3,032,321	-		DZA65_RS14125	0.26	+0.6
3,032,334	+		DZA65_RS14125	0.27	+0.1
3,032,334	+		DZA65_RS14125	0.27	-0.1
3,032,335	-		DZA65_RS14125	0.27	+1.8
3,032,335	-		DZA65_RS14125	0.27	-0.6
3,032,357	+		DZA65_RS14125	0.29	-2.8
3,032,411	+		DZA65_RS14125	0.33	+0.5
3,032,411	+		DZA65_RS14125	0.33	+0.3
3,032,411	+		DZA65_RS14125	0.33	-0.5
3,032,411	+		DZA65_RS14125	0.33	-0.5
3,032,412	-		DZA65_RS14125	0.33	-0.3
3,032,412	-		DZA65_RS14125	0.33	-0.9
3,032,412	-		DZA65_RS14125	0.33	+1.4
3,032,421	-		DZA65_RS14125	0.34	+0.1
3,032,421	-		DZA65_RS14125	0.34	+1.0
3,032,492	+		DZA65_RS14125	0.40	+0.9
3,032,492	+		DZA65_RS14125	0.40	+2.3
3,032,493	-		DZA65_RS14125	0.40	-0.3
3,032,493	-		DZA65_RS14125	0.40	-0.3
3,032,550	+		DZA65_RS14125	0.44	+0.2
3,032,551	-		DZA65_RS14125	0.44	-1.5
3,032,668	+		DZA65_RS14125	0.53	+1.2
3,032,668	+		DZA65_RS14125	0.53	-0.5
3,032,668	+		DZA65_RS14125	0.53	-1.8
3,032,668	+		DZA65_RS14125	0.53	+0.2
3,032,668	+		DZA65_RS14125	0.53	-0.0
3,032,668	+		DZA65_RS14125	0.53	-2.1
3,032,669	-		DZA65_RS14125	0.53	+0.1
3,032,669	-		DZA65_RS14125	0.53	+0.2
3,032,669	-		DZA65_RS14125	0.53	-1.1
3,032,669	-		DZA65_RS14125	0.53	+1.2
3,032,673	-		DZA65_RS14125	0.54	+0.1
3,032,691	-		DZA65_RS14125	0.55	+0.9
3,032,695	-		DZA65_RS14125	0.55	+1.4
3,032,704	+		DZA65_RS14125	0.56	+1.3
3,032,704	+		DZA65_RS14125	0.56	+0.8
3,032,705	-		DZA65_RS14125	0.56	-0.9
3,032,705	-		DZA65_RS14125	0.56	+1.6
3,032,771	+		DZA65_RS14125	0.61	+0.0
3,032,771	+		DZA65_RS14125	0.61	+0.1
3,032,771	+		DZA65_RS14125	0.61	-0.1
3,032,772	-		DZA65_RS14125	0.62	-1.8
3,032,774	+		DZA65_RS14125	0.62	+0.4
3,032,775	-				+0.5
3,032,791	+		DZA65_RS14125	0.63	-0.1
3,032,791	+		DZA65_RS14125	0.63	-0.3
3,032,791	+		DZA65_RS14125	0.63	+1.0
3,032,791	+		DZA65_RS14125	0.63	-0.2
3,032,792	-		DZA65_RS14125	0.63	+0.2
3,032,792	-		DZA65_RS14125	0.63	-1.8
3,032,792	-		DZA65_RS14125	0.63	+0.0
3,032,792	-		DZA65_RS14125	0.63	+0.2
3,032,792	-		DZA65_RS14125	0.63	+0.5
3,032,792	-		DZA65_RS14125	0.63	+1.8
3,032,836	+		DZA65_RS14125	0.67	+0.5
3,032,942	-		DZA65_RS14125	0.75	+0.3
3,032,942	-		DZA65_RS14125	0.75	-0.1
3,033,003	-		DZA65_RS14125	0.80	-0.3
3,033,014	+		DZA65_RS14125	0.80	+0.5
3,033,015	-		DZA65_RS14125	0.81	+0.7
3,033,015	-		DZA65_RS14125	0.81	+0.7
3,033,016	+		DZA65_RS14125	0.81	-1.5
3,033,017	-		DZA65_RS14125	0.81	-1.1
3,033,017	-		DZA65_RS14125	0.81	+2.8
3,033,017	-		DZA65_RS14125	0.81	+2.1
3,033,054	-		DZA65_RS14125	0.84	+1.9
3,033,092	+		DZA65_RS14125	0.87	+0.1
3,033,093	-		DZA65_RS14125	0.87	+0.5
3,033,093	-		DZA65_RS14125	0.87	-0.5
3,033,116	+		DZA65_RS14125	0.88	+1.0
3,033,119	+		DZA65_RS14125	0.89	-0.2
3,033,119	+		DZA65_RS14125	0.89	+0.1
3,033,119	+		DZA65_RS14125	0.89	-0.5
3,033,137	-				+1.3
3,033,139	+				-3.2
3,033,139	+				+0.9
3,033,140	-				-0.3
3,033,140	-				-1.8
3,033,140	-				-0.1
3,033,143	+				+0.5
3,033,144	-				+0.5
3,033,210	+				-0.3
3,033,242	+				-0.4
3,033,294	+				-0.5
3,033,294	+				-1.5
3,033,295	-				+1.1
3,033,295	-				+1.0
3,033,316	+				-2.5
3,033,316	+				+0.7
3,033,317	-				-1.8
3,033,367	-				+0.3
3,033,421	+				+0.8
3,033,448	+				+1.0
3,033,448	+				-1.1
3,033,448	+				+1.7
3,033,449	-				+0.1
3,033,449	-				-0.6
3,033,463	-				-0.0
3,033,463	-				-0.5
3,033,463	-				+0.5
3,033,495	+				+0.4
3,033,495	+				-1.8
3,033,496	-				+0.4
3,033,498	-				-0.9
3,033,498	-				-1.3
3,033,500	+				-0.5
3,033,500	+				-0.6
3,033,500	+				-0.1
3,033,501	-				+0.6
3,033,501	-				-0.8
3,033,501	-				+0.1
3,033,501	-				-0.7
3,033,512	-				+1.2
3,033,540	-				-1.1
3,033,556	+				-0.9
3,033,556	+				+0.5
3,033,556	+				-0.6
3,033,556	+				-0.3
3,033,556	+				-1.8
3,033,557	-				+0.8
3,033,557	-				-0.8
3,033,557	-				+0.2
3,033,557	-				-1.8
3,033,560	+				-0.9
3,033,560	+				+0.9
3,033,560	+				+1.0
3,033,560	+				-1.3
3,033,560	+				-0.0
3,033,561	-				-1.8
3,033,561	-				+0.5
3,033,561	-				-1.5
3,033,589	-				-0.9
3,033,606	-				+0.2
3,033,652	+				-0.7
3,033,652	+				-0.3
3,033,657	+				-0.3
3,033,658	-				-0.7
3,033,661	-				-1.8
3,033,700	-				-1.2
3,033,706	+				+1.5
3,033,707	-				+2.1
3,033,790	+				+0.2
3,033,808	+				+0.2
3,033,809	-				-1.8
3,033,809	-				-0.9
3,033,809	-				+0.2
3,033,820	+				-0.1
3,033,853	+				+0.5
3,033,867	+				-2.5
3,033,868	-				-0.3
3,033,879	+				-1.5
3,033,879	+				+0.9
3,033,879	+				+1.3
3,033,879	+				-0.5
3,033,880	-				+0.1
3,033,880	-				+0.9
3,033,880	-				-0.0
3,033,880	-				-2.6
3,033,880	-				+1.2
3,033,880	-				-1.5
3,033,882	-				-0.3
3,033,882	-				-2.3
3,033,882	-				-0.5
3,033,882	-				-1.8
3,033,913	-				-2.1
3,033,924	+				-1.1
3,033,925	-				-0.7
3,033,927	+				-0.9
3,033,928	-				+0.5
3,033,976	+				-0.2
3,033,976	+				-1.7
3,033,993	+				+0.3
3,033,993	+				+0.5
3,033,994	-		DZA65_RS14130	0.10	-1.3
3,033,994	-		DZA65_RS14130	0.10	+0.7
3,033,994	-		DZA65_RS14130	0.10	+0.3
3,033,994	-		DZA65_RS14130	0.10	+0.3
3,033,994	-		DZA65_RS14130	0.10	+0.7
3,033,994	-		DZA65_RS14130	0.10	+0.3
3,033,994	-		DZA65_RS14130	0.10	+0.5
3,033,997	+		DZA65_RS14130	0.11	-1.8
3,033,997	+		DZA65_RS14130	0.11	+1.6
3,033,997	+		DZA65_RS14130	0.11	-0.1
3,033,998	-		DZA65_RS14130	0.12	+0.2
3,034,048	+		DZA65_RS14130	0.28	-0.5
3,034,122	+		DZA65_RS14130	0.51	-1.1
3,034,123	-		DZA65_RS14130	0.52	-0.1
3,034,123	-		DZA65_RS14130	0.52	+2.1
3,034,195	+		DZA65_RS14130	0.75	-0.5