Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13265

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,837,867	+		DZA65_RS13260	0.66	-1.9
2,837,867	+		DZA65_RS13260	0.66	+0.1
2,837,867	+		DZA65_RS13260	0.66	+0.7
2,837,867	+		DZA65_RS13260	0.66	-0.1
2,837,867	+		DZA65_RS13260	0.66	-0.4
2,837,867	+		DZA65_RS13260	0.66	+0.1
2,837,867	+		DZA65_RS13260	0.66	+1.0
2,837,868	-		DZA65_RS13260	0.66	+0.3
2,837,868	-		DZA65_RS13260	0.66	+0.7
2,837,868	-		DZA65_RS13260	0.66	-1.1
2,837,868	-		DZA65_RS13260	0.66	-0.3
2,837,880	+		DZA65_RS13260	0.67	+0.9
2,837,880	+		DZA65_RS13260	0.67	+1.3
2,838,047	+		DZA65_RS13260	0.75	-0.4
2,838,048	-		DZA65_RS13260	0.75	-1.1
2,838,048	-		DZA65_RS13260	0.75	+0.0
2,838,081	+		DZA65_RS13260	0.77	+0.7
2,838,082	-		DZA65_RS13260	0.77	-0.9
2,838,083	+		DZA65_RS13260	0.77	+1.5
2,838,083	+		DZA65_RS13260	0.77	+1.5
2,838,084	-		DZA65_RS13260	0.77	+0.9
2,838,084	-		DZA65_RS13260	0.77	+0.0
2,838,084	-		DZA65_RS13260	0.77	+1.5
2,838,084	-		DZA65_RS13260	0.77	-0.3
2,838,084	-		DZA65_RS13260	0.77	-0.1
2,838,105	+		DZA65_RS13260	0.78	-1.9
2,838,105	+		DZA65_RS13260	0.78	+0.6
2,838,106	-		DZA65_RS13260	0.78	-0.8
2,838,204	+		DZA65_RS13260	0.84	+0.0
2,838,217	+		DZA65_RS13260	0.84	-0.0
2,838,217	+		DZA65_RS13260	0.84	-0.6
2,838,217	+		DZA65_RS13260	0.84	-0.3
2,838,217	+		DZA65_RS13260	0.84	-1.2
2,838,217	+		DZA65_RS13260	0.84	+0.5
2,838,218	-		DZA65_RS13260	0.84	+1.2
2,838,218	-		DZA65_RS13260	0.84	+0.1
2,838,296	+		DZA65_RS13260	0.89	-0.3
2,838,297	-		DZA65_RS13260	0.89	-1.0
2,838,297	-		DZA65_RS13260	0.89	+2.1
2,838,418	-				+0.6
2,838,443	-				+0.2
2,838,451	-				+0.3
2,838,456	+				+0.5
2,838,457	-				-0.5
2,838,485	-				-0.5
2,838,507	-				-2.1
2,838,518	-				-0.1
2,838,525	+				-0.5
2,838,525	+				+0.9
2,838,526	-				+0.5
2,838,571	+				+0.5
2,838,572	-				-0.9
2,838,572	-				-0.1
2,838,572	-				+2.3
2,838,589	+		DZA65_RS22930	0.17	-0.5
2,838,682	+		DZA65_RS22930	0.68	+0.9
2,838,684	+		DZA65_RS22930	0.69	-0.9
2,838,685	-		DZA65_RS22930	0.70	-1.9
2,838,685	-		DZA65_RS22930	0.70	+0.9
2,838,712	-		DZA65_RS22930	0.85	+1.2
2,838,712	-		DZA65_RS22930	0.85	+1.3
2,838,852	+				+0.5
2,838,899	+		DZA65_RS13265	0.11	-1.3
2,838,900	-		DZA65_RS13265	0.11	-1.5
2,838,909	+		DZA65_RS13265	0.12	-2.9
2,838,910	-		DZA65_RS13265	0.12	-0.3
2,838,910	-		DZA65_RS13265	0.12	-0.7
2,838,951	+		DZA65_RS13265	0.17	-0.0
2,838,951	+		DZA65_RS13265	0.17	+1.0
2,838,952	-		DZA65_RS13265	0.17	-1.9
2,838,954	-		DZA65_RS13265	0.17	-0.4
2,838,993	+		DZA65_RS13265	0.22	-0.4
2,838,994	-		DZA65_RS13265	0.22	-0.1
2,838,998	-		DZA65_RS13265	0.22	-2.4
2,839,016	-		DZA65_RS13265	0.24	+0.9
2,839,058	+		DZA65_RS13265	0.29	-0.1
2,839,058	+		DZA65_RS13265	0.29	-1.5
2,839,058	+		DZA65_RS13265	0.29	+0.5
2,839,059	-		DZA65_RS13265	0.29	-0.3
2,839,077	+		DZA65_RS13265	0.32	-0.5
2,839,078	-		DZA65_RS13265	0.32	-1.9
2,839,079	+		DZA65_RS13265	0.32	-0.2
2,839,079	+		DZA65_RS13265	0.32	+0.1
2,839,080	-		DZA65_RS13265	0.32	-0.3
2,839,097	+		DZA65_RS13265	0.34	+0.5
2,839,097	+		DZA65_RS13265	0.34	+0.6
2,839,097	+		DZA65_RS13265	0.34	-0.1
2,839,134	+		DZA65_RS13265	0.38	-0.2
2,839,137	+		DZA65_RS13265	0.39	+0.2
2,839,138	-		DZA65_RS13265	0.39	+0.7
2,839,138	-		DZA65_RS13265	0.39	+0.9
2,839,156	-		DZA65_RS13265	0.41	-0.5
2,839,156	-		DZA65_RS13265	0.41	+0.3
2,839,165	+		DZA65_RS13265	0.42	-0.4
2,839,165	+		DZA65_RS13265	0.42	-1.0
2,839,243	-		DZA65_RS13265	0.51	-0.9
2,839,243	-		DZA65_RS13265	0.51	-0.5
2,839,243	-		DZA65_RS13265	0.51	+0.3
2,839,243	-		DZA65_RS13265	0.51	-0.5
2,839,243	-		DZA65_RS13265	0.51	-0.4
2,839,246	-		DZA65_RS13265	0.51	+1.0
2,839,246	-		DZA65_RS13265	0.51	-0.1
2,839,377	+		DZA65_RS13265	0.67	+0.5
2,839,377	+		DZA65_RS13265	0.67	+1.0
2,839,377	+		DZA65_RS13265	0.67	+0.2
2,839,377	+		DZA65_RS13265	0.67	-0.4
2,839,377	+		DZA65_RS13265	0.67	-1.9
2,839,378	-		DZA65_RS13265	0.67	-0.8
2,839,378	-				+1.0
2,839,379	+		DZA65_RS13265	0.67	-0.5
2,839,379	+		DZA65_RS13265	0.67	-1.5
2,839,379	+		DZA65_RS13265	0.67	-1.4
2,839,380	-		DZA65_RS13265	0.67	+1.6
2,839,380	-		DZA65_RS13265	0.67	+0.3
2,839,380	-		DZA65_RS13265	0.67	-1.5
2,839,380	-		DZA65_RS13265	0.67	-0.0
2,839,632	+				+0.2
2,839,633	-				+1.6
2,839,636	-				-0.8
2,839,642	+				+0.8
2,839,643	-				-1.9
2,839,643	-				-0.9
2,839,643	-				+0.8
2,839,735	+				+0.1
2,839,736	-				-1.7
2,839,796	-				+0.1
2,839,802	+				+1.9
2,839,807	+				-0.5
2,839,808	-				-1.5
2,839,874	+				-2.0
2,839,878	-				-1.5
2,839,884	+				-0.5
2,839,884	+				+0.7
2,839,885	-				-0.2
2,839,888	+				-0.1
2,839,888	+				-3.3
2,839,888	+				-2.4
2,839,888	+				+1.4
2,839,889	-				+0.5
2,839,889	-				-0.4
2,839,889	-				-0.4
2,839,950	-				+1.2
2,840,025	+				-0.5
2,840,054	+				+0.5
2,840,054	+				-0.4
2,840,054	+				+1.0
2,840,055	-				+0.6
2,840,055	-				+0.5
2,840,055	-				-1.4
2,840,062	+				-0.7
2,840,069	+				-0.5
2,840,070	-				+0.2
2,840,070	-				-1.1
2,840,073	+				+0.2
2,840,073	+				-0.1
2,840,074	-				+2.9
2,840,074	-				+1.7
2,840,075	+				+0.5
2,840,076	-				-0.2
2,840,140	+				-1.6
2,840,140	+				+0.0
2,840,140	+				+1.2
2,840,140	+				+0.8
2,840,161	+				+0.4
2,840,161	+				+0.0
2,840,239	+				+0.2
2,840,239	+				+0.7
2,840,239	+				+1.0
2,840,239	+				-1.9
2,840,239	+				-0.9
2,840,239	+				+0.0
2,840,239	+				-0.2
2,840,239	+				-1.4
2,840,240	-				+1.0
2,840,240	-				-2.6
2,840,240	-				-0.8
2,840,240	-				+0.4
2,840,240	-				-0.7
2,840,240	-				-0.3
2,840,240	-				+0.4
2,840,240	-				-0.2
2,840,240	-				-0.6
2,840,240	-				-0.4
2,840,240	-				+1.4
2,840,241	+				+1.0
2,840,241	+				+1.6
2,840,241	+				-0.1
2,840,241	+				+0.0
2,840,241	+				+0.4
2,840,241	+				-0.5
2,840,242	-				+0.4
2,840,242	-				+0.4
2,840,242	-				+1.8
2,840,242	-				-1.6
2,840,245	+				-1.9
2,840,245	+				-1.0
2,840,245	+				-0.6
2,840,246	-				+0.6
2,840,246	-				+0.1
2,840,246	-				+1.3
2,840,246	-				+1.1
2,840,251	+				-1.1
2,840,251	+				-0.6
2,840,270	+				+0.4
2,840,271	-				+0.4
2,840,271	-				+0.2
2,840,271	-				+1.7
2,840,322	-				-1.0
2,840,337	+				-0.2
2,840,344	+				-0.6
2,840,345	-				+0.8
2,840,345	-				+0.2
2,840,374	+				+0.9
2,840,374	+				+0.5
2,840,406	+				-2.4
2,840,407	-				-0.1
2,840,439	+				+1.0
2,840,439	+				+0.7
2,840,439	+				+0.4
2,840,440	-				-1.1
2,840,440	-				-0.6
2,840,440	-				+0.0
2,840,440	-				-2.6
2,840,488	+				-0.1
2,840,488	+				-0.8
2,840,488	+				+0.4