Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13250

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,832,623	+		DZA65_RS13245	0.32	-1.9
2,832,647	+		DZA65_RS13245	0.34	-0.9
2,832,647	+		DZA65_RS13245	0.34	+1.4
2,832,648	-		DZA65_RS13245	0.34	-0.1
2,832,648	-		DZA65_RS13245	0.34	-0.2
2,832,694	+		DZA65_RS13245	0.38	+0.4
2,832,704	+		DZA65_RS13245	0.39	+0.7
2,832,705	-		DZA65_RS13245	0.39	+2.4
2,832,877	+		DZA65_RS13245	0.53	-0.6
2,832,883	+		DZA65_RS13245	0.54	-0.2
2,832,883	+		DZA65_RS13245	0.54	-3.5
2,832,883	+		DZA65_RS13245	0.54	+1.0
2,832,883	+		DZA65_RS13245	0.54	+1.1
2,832,884	-		DZA65_RS13245	0.54	+1.5
2,832,884	-		DZA65_RS13245	0.54	-0.6
2,832,884	-		DZA65_RS13245	0.54	-0.2
2,832,916	+		DZA65_RS13245	0.57	-2.9
2,832,917	-		DZA65_RS13245	0.57	-0.8
2,832,937	+		DZA65_RS13245	0.58	+0.6
2,832,937	+		DZA65_RS13245	0.58	-1.3
2,832,937	+		DZA65_RS13245	0.58	-0.9
2,832,937	+		DZA65_RS13245	0.58	-0.9
2,832,937	+		DZA65_RS13245	0.58	-0.1
2,832,938	-		DZA65_RS13245	0.58	-2.1
2,832,938	-		DZA65_RS13245	0.58	+1.2
2,832,973	+		DZA65_RS13245	0.61	+0.6
2,832,973	+		DZA65_RS13245	0.61	-0.3
2,832,973	+		DZA65_RS13245	0.61	-1.2
2,832,973	+		DZA65_RS13245	0.61	+0.3
2,832,973	+		DZA65_RS13245	0.61	-0.6
2,832,973	+		DZA65_RS13245	0.61	-1.0
2,832,974	-		DZA65_RS13245	0.61	+1.8
2,832,974	-		DZA65_RS13245	0.61	+0.1
2,832,974	-		DZA65_RS13245	0.61	+1.2
2,832,974	-		DZA65_RS13245	0.61	+1.3
2,832,974	-		DZA65_RS13245	0.61	+0.2
2,832,974	-		DZA65_RS13245	0.61	-0.2
2,832,974	-		DZA65_RS13245	0.61	+1.3
2,832,974	-		DZA65_RS13245	0.61	+0.2
2,832,987	+		DZA65_RS13245	0.63	+0.4
2,832,987	+		DZA65_RS13245	0.63	-0.6
2,832,988	-		DZA65_RS13245	0.63	+0.0
2,832,988	-		DZA65_RS13245	0.63	-1.6
2,832,988	-		DZA65_RS13245	0.63	+0.4
2,832,988	-		DZA65_RS13245	0.63	-0.7
2,833,088	+		DZA65_RS13245	0.71	-0.4
2,833,115	+		DZA65_RS13245	0.73	-1.6
2,833,115	+		DZA65_RS13245	0.73	-0.8
2,833,115	+		DZA65_RS13245	0.73	-0.9
2,833,123	+		DZA65_RS13245	0.74	+1.2
2,833,123	+		DZA65_RS13245	0.74	+0.4
2,833,123	+		DZA65_RS13245	0.74	-0.1
2,833,123	+		DZA65_RS13245	0.74	-0.6
2,833,123	+		DZA65_RS13245	0.74	+0.9
2,833,123	+		DZA65_RS13245	0.74	+2.1
2,833,123	+		DZA65_RS13245	0.74	+1.3
2,833,123	+		DZA65_RS13245	0.74	+0.4
2,833,123	+		DZA65_RS13245	0.74	+0.3
2,833,124	-		DZA65_RS13245	0.74	+1.1
2,833,124	-		DZA65_RS13245	0.74	-0.9
2,833,124	-		DZA65_RS13245	0.74	-0.5
2,833,124	-		DZA65_RS13245	0.74	+0.3
2,833,130	-		DZA65_RS13245	0.75	+0.7
2,833,271	+		DZA65_RS13245	0.86	-0.8
2,833,271	+		DZA65_RS13245	0.86	+1.0
2,833,271	+		DZA65_RS13245	0.86	-0.6
2,833,271	+		DZA65_RS13245	0.86	-1.3
2,833,272	-				+1.2
2,833,272	-		DZA65_RS13245	0.87	+0.1
2,833,272	-		DZA65_RS13245	0.87	+0.1
2,833,272	-		DZA65_RS13245	0.87	+0.6
2,833,272	-		DZA65_RS13245	0.87	+1.0
2,833,272	-		DZA65_RS13245	0.87	-0.3
2,833,272	-		DZA65_RS13245	0.87	+0.6
2,833,272	-		DZA65_RS13245	0.87	-0.1
2,833,303	+		DZA65_RS13245	0.89	+0.0
2,833,303	+		DZA65_RS13245	0.89	+1.1
2,833,303	+		DZA65_RS13245	0.89	+0.0
2,833,304	-		DZA65_RS13245	0.89	-1.6
2,833,304	-		DZA65_RS13245	0.89	-0.1
2,833,304	-		DZA65_RS13245	0.89	-0.7
2,833,304	-		DZA65_RS13245	0.89	-0.4
2,833,304	-		DZA65_RS13245	0.89	-0.2
2,833,399	-				+0.8
2,833,399	-				+0.9
2,833,459	+				-0.1
2,833,519	-				+1.2
2,833,583	+				-0.2
2,833,583	+				+1.3
2,833,583	+				-0.9
2,833,583	+				+3.0
2,833,583	+				+1.5
2,833,583	+				-2.5
2,833,583	+				+0.6
2,833,583	+				+1.0
2,833,583	+				-0.1
2,833,583	+				-1.7
2,833,583	+				-0.5
2,833,583	+				-1.5
2,833,583	+				-0.1
2,833,583	+				+0.4
2,833,583	+				+0.9
2,833,584	-				-0.5
2,833,584	-				-0.1
2,833,584	-				+0.2
2,833,584	-				-2.1
2,833,592	+				-0.6
2,833,593	-				+0.2
2,833,662	+		DZA65_RS13250	0.11	+4.5
2,833,662	+		DZA65_RS13250	0.11	+1.8
2,833,682	+		DZA65_RS13250	0.13	-1.4
2,833,682	+		DZA65_RS13250	0.13	-1.4
2,833,682	+		DZA65_RS13250	0.13	+0.4
2,833,683	-		DZA65_RS13250	0.13	-1.3
2,833,683	-		DZA65_RS13250	0.13	+1.8
2,833,701	+		DZA65_RS13250	0.14	+0.5
2,833,701	+		DZA65_RS13250	0.14	+1.7
2,833,701	+		DZA65_RS13250	0.14	+0.5
2,833,702	-		DZA65_RS13250	0.14	+0.5
2,833,746	-		DZA65_RS13250	0.17	+0.3
2,833,746	-		DZA65_RS13250	0.17	-0.8
2,833,746	-		DZA65_RS13250	0.17	+0.3
2,833,746	-		DZA65_RS13250	0.17	-1.0
2,833,760	+		DZA65_RS13250	0.18	+1.0
2,833,760	+		DZA65_RS13250	0.18	-0.2
2,833,761	-		DZA65_RS13250	0.18	-1.9
2,833,761	-		DZA65_RS13250	0.18	-0.2
2,833,761	-		DZA65_RS13250	0.18	-2.1
2,833,761	-		DZA65_RS13250	0.18	-2.5
2,833,801	-		DZA65_RS13250	0.21	-0.2
2,833,817	+		DZA65_RS13250	0.22	+0.3
2,833,817	+		DZA65_RS13250	0.22	-1.0
2,833,817	+		DZA65_RS13250	0.22	-1.1
2,833,818	-		DZA65_RS13250	0.22	+0.2
2,833,818	-		DZA65_RS13250	0.22	+0.0
2,833,818	-		DZA65_RS13250	0.22	+0.3
2,833,818	-		DZA65_RS13250	0.22	-2.8
2,833,818	-		DZA65_RS13250	0.22	-0.3
2,833,818	-		DZA65_RS13250	0.22	-0.3
2,833,818	-		DZA65_RS13250	0.22	+1.9
2,833,818	-		DZA65_RS13250	0.22	-0.6
2,833,823	+		DZA65_RS13250	0.22	+0.6
2,833,824	-		DZA65_RS13250	0.22	+1.6
2,833,824	-		DZA65_RS13250	0.22	+1.0
2,833,824	-		DZA65_RS13250	0.22	+1.0
2,833,824	-		DZA65_RS13250	0.22	-0.3
2,833,844	+		DZA65_RS13250	0.23	+2.4
2,833,844	+		DZA65_RS13250	0.23	+1.2
2,833,844	+		DZA65_RS13250	0.23	-0.8
2,833,844	+		DZA65_RS13250	0.23	-0.0
2,833,845	-				+1.5
2,833,845	-		DZA65_RS13250	0.23	+1.2
2,833,845	-		DZA65_RS13250	0.23	+1.2
2,833,845	-		DZA65_RS13250	0.23	+0.3
2,833,883	+		DZA65_RS13250	0.26	+0.3
2,833,883	+		DZA65_RS13250	0.26	+0.4
2,833,883	+		DZA65_RS13250	0.26	+0.1
2,833,883	+		DZA65_RS13250	0.26	+0.1
2,833,883	+		DZA65_RS13250	0.26	-0.5
2,833,883	+		DZA65_RS13250	0.26	-0.3
2,833,883	+		DZA65_RS13250	0.26	-2.5
2,833,883	+		DZA65_RS13250	0.26	+0.5
2,833,883	+		DZA65_RS13250	0.26	-0.0
2,833,883	+		DZA65_RS13250	0.26	+2.4
2,833,883	+		DZA65_RS13250	0.26	+0.6
2,833,883	+		DZA65_RS13250	0.26	-1.5
2,833,884	-		DZA65_RS13250	0.26	-0.7
2,833,884	-				-0.1
2,833,884	-		DZA65_RS13250	0.26	+0.3
2,833,884	-		DZA65_RS13250	0.26	+0.1
2,833,884	-		DZA65_RS13250	0.26	+1.8
2,833,884	-		DZA65_RS13250	0.26	-1.4
2,833,884	-		DZA65_RS13250	0.26	-0.5
2,833,884	-		DZA65_RS13250	0.26	-0.4
2,833,884	-		DZA65_RS13250	0.26	-0.3
2,833,884	-		DZA65_RS13250	0.26	+0.1
2,833,938	-		DZA65_RS13250	0.29	+0.5
2,833,940	+		DZA65_RS13250	0.30	+3.9
2,833,941	-		DZA65_RS13250	0.30	+0.2
2,833,941	-		DZA65_RS13250	0.30	+0.2
2,833,941	-		DZA65_RS13250	0.30	-0.9
2,833,945	-		DZA65_RS13250	0.30	+0.2
2,833,945	-		DZA65_RS13250	0.30	+0.7
2,834,007	+		DZA65_RS13250	0.34	-1.1
2,834,008	-		DZA65_RS13250	0.34	+0.7
2,834,034	+		DZA65_RS13250	0.36	-1.4
2,834,102	+		DZA65_RS13250	0.40	-1.0
2,834,103	-		DZA65_RS13250	0.40	+0.5
2,834,103	-		DZA65_RS13250	0.40	-0.3
2,834,103	-		DZA65_RS13250	0.40	+1.5
2,834,109	+		DZA65_RS13250	0.41	-1.1
2,834,110	-		DZA65_RS13250	0.41	+0.6
2,834,142	+		DZA65_RS13250	0.43	-0.5
2,834,157	-		DZA65_RS13250	0.44	-0.9
2,834,205	+		DZA65_RS13250	0.47	+0.5
2,834,208	-		DZA65_RS13250	0.47	-1.3
2,834,208	-		DZA65_RS13250	0.47	-0.4
2,834,229	+		DZA65_RS13250	0.48	+1.0
2,834,243	+		DZA65_RS13250	0.49	+0.3
2,834,264	+		DZA65_RS13250	0.51	-0.9
2,834,301	+		DZA65_RS13250	0.53	+0.5
2,834,322	+		DZA65_RS13250	0.55	-2.4
2,834,358	+		DZA65_RS13250	0.57	+1.4
2,834,359	-		DZA65_RS13250	0.57	+0.7
2,834,359	-		DZA65_RS13250	0.57	+2.0
2,834,359	-		DZA65_RS13250	0.57	+0.6
2,834,359	-		DZA65_RS13250	0.57	+1.5
2,834,390	+		DZA65_RS13250	0.59	+1.1
2,834,465	+		DZA65_RS13250	0.64	-0.7
2,834,466	-		DZA65_RS13250	0.64	+1.8
2,834,466	-		DZA65_RS13250	0.64	-1.4
2,834,466	-		DZA65_RS13250	0.64	+0.8
2,834,499	+		DZA65_RS13250	0.66	-1.7
2,834,499	+		DZA65_RS13250	0.66	-1.7
2,834,499	+		DZA65_RS13250	0.66	-0.4
2,834,500	-		DZA65_RS13250	0.66	+1.0
2,834,528	+		DZA65_RS13250	0.68	+1.3
2,834,528	+		DZA65_RS13250	0.68	-0.4
2,834,528	+		DZA65_RS13250	0.68	-0.4
2,834,529	-		DZA65_RS13250	0.68	+0.1
2,834,577	+		DZA65_RS13250	0.71	-1.2
2,834,577	+		DZA65_RS13250	0.71	-0.4
2,834,577	+		DZA65_RS13250	0.71	-1.1
2,834,578	-		DZA65_RS13250	0.71	+1.6
2,834,610	+		DZA65_RS13250	0.73	-0.3
2,834,610	+		DZA65_RS13250	0.73	-0.3
2,834,610	+		DZA65_RS13250	0.73	-0.2
2,834,610	+		DZA65_RS13250	0.73	+1.3
2,834,610	+		DZA65_RS13250	0.73	+1.7
2,834,618	+		DZA65_RS13250	0.74	-0.5
2,834,618	+		DZA65_RS13250	0.74	+0.8
2,834,727	+		DZA65_RS13250	0.81	+0.2
2,834,746	+		DZA65_RS13250	0.82	-0.1
2,834,746	+		DZA65_RS13250	0.82	+0.5
2,834,845	-		DZA65_RS13250	0.89	+0.3
2,834,999	+				-0.4
2,834,999	+				+0.9
2,835,000	-				+1.0
2,835,139	+				+1.8
2,835,186	+				+2.0
2,835,186	+				-1.5
2,835,186	+				-1.1
2,835,298	-				+1.0
2,835,298	-				+0.6
2,835,298	-				-0.3
2,835,302	-				+0.3
2,835,367	+		DZA65_RS13255	0.13	+0.7
2,835,367	+		DZA65_RS13255	0.13	+1.5
2,835,367	+		DZA65_RS13255	0.13	-0.2
2,835,367	+		DZA65_RS13255	0.13	-0.9
2,835,367	+		DZA65_RS13255	0.13	-0.3
2,835,367	+		DZA65_RS13255	0.13	+0.0
2,835,368	-		DZA65_RS13255	0.13	+0.5
2,835,368	-		DZA65_RS13255	0.13	-0.6
2,835,368	-		DZA65_RS13255	0.13	-2.5
2,835,478	+		DZA65_RS13255	0.21	-0.0
2,835,478	+		DZA65_RS13255	0.21	+0.2
2,835,479	-		DZA65_RS13255	0.21	+0.8
2,835,479	-		DZA65_RS13255	0.21	-0.1
2,835,479	-		DZA65_RS13255	0.21	-0.3
2,835,508	+		DZA65_RS13255	0.23	-2.1
2,835,508	+		DZA65_RS13255	0.23	+0.5
2,835,509	-		DZA65_RS13255	0.23	+0.4
2,835,509	-		DZA65_RS13255	0.23	+0.5
2,835,552	+		DZA65_RS13255	0.26	+1.2
2,835,552	+		DZA65_RS13255	0.26	-0.3
2,835,553	-		DZA65_RS13255	0.26	-0.1
2,835,553	-		DZA65_RS13255	0.26	-1.1
2,835,684	+		DZA65_RS13255	0.35	+0.9
2,835,684	+		DZA65_RS13255	0.35	+0.9
2,835,684	+		DZA65_RS13255	0.35	-0.1
2,835,684	+		DZA65_RS13255	0.35	-0.5
2,835,684	+		DZA65_RS13255	0.35	-0.0
2,835,685	-		DZA65_RS13255	0.36	-0.9
2,835,685	-		DZA65_RS13255	0.36	-1.5
2,835,685	-		DZA65_RS13255	0.36	-1.1
2,835,687	+		DZA65_RS13255	0.36	+0.5
2,835,687	+		DZA65_RS13255	0.36	-0.9
2,835,691	+		DZA65_RS13255	0.36	-0.1
2,835,691	+		DZA65_RS13255	0.36	-0.1
2,835,692	-		DZA65_RS13255	0.36	-0.5
2,835,744	-		DZA65_RS13255	0.40	+0.5
2,835,744	-		DZA65_RS13255	0.40	+1.5
2,835,745	+		DZA65_RS13255	0.40	+0.7
2,835,745	+		DZA65_RS13255	0.40	+0.5
2,835,746	-		DZA65_RS13255	0.40	-0.5
2,835,746	-		DZA65_RS13255	0.40	+1.5
2,835,746	-		DZA65_RS13255	0.40	+1.1
2,835,754	+		DZA65_RS13255	0.40	+0.5
2,835,754	+		DZA65_RS13255	0.40	-0.2
2,835,754	+		DZA65_RS13255	0.40	-0.2
2,835,755	-		DZA65_RS13255	0.41	-0.3
2,835,755	-		DZA65_RS13255	0.41	+0.1
2,835,758	-		DZA65_RS13255	0.41	-0.4
2,835,774	+		DZA65_RS13255	0.42	-0.8
2,835,784	+		DZA65_RS13255	0.43	-0.1
2,835,784	+		DZA65_RS13255	0.43	+0.1
2,835,785	-		DZA65_RS13255	0.43	-0.5
2,835,785	-		DZA65_RS13255	0.43	+0.1
2,835,785	-		DZA65_RS13255	0.43	-1.1
2,835,786	+		DZA65_RS13255	0.43	-0.2
2,835,786	+		DZA65_RS13255	0.43	+0.5
2,835,889	-		DZA65_RS13255	0.50	-0.1
2,835,988	+		DZA65_RS13255	0.57	-0.8
2,835,988	+		DZA65_RS13255	0.57	-1.0
2,835,996	+		DZA65_RS13255	0.58	+0.6
2,835,996	+		DZA65_RS13255	0.58	-0.1
2,835,996	+		DZA65_RS13255	0.58	-0.0