Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12540

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,686,487	+		DZA65_RS12530	0.64	-2.0
2,686,487	+		DZA65_RS12530	0.64	+0.1
2,686,488	-		DZA65_RS12530	0.64	+0.0
2,686,627	+		DZA65_RS12530	0.74	-0.9
2,686,627	+		DZA65_RS12530	0.74	-1.6
2,686,627	+		DZA65_RS12530	0.74	+1.5
2,686,627	+		DZA65_RS12530	0.74	+0.1
2,686,628	-		DZA65_RS12530	0.74	-0.6
2,686,628	-		DZA65_RS12530	0.74	-0.4
2,686,628	-		DZA65_RS12530	0.74	-0.8
2,686,628	-		DZA65_RS12530	0.74	+0.8
2,686,803	+		DZA65_RS12530	0.86	+0.7
2,686,803	+		DZA65_RS12530	0.86	-2.6
2,686,803	+		DZA65_RS12530	0.86	+0.5
2,686,803	+		DZA65_RS12530	0.86	-3.1
2,686,804	-		DZA65_RS12530	0.86	-0.4
2,686,850	+		DZA65_RS12530	0.89	-0.1
2,686,850	+		DZA65_RS12530	0.89	-0.4
2,686,850	+		DZA65_RS12530	0.89	+0.8
2,686,850	+		DZA65_RS12530	0.89	-0.4
2,686,850	+		DZA65_RS12530	0.89	-0.5
2,686,850	+		DZA65_RS12530	0.89	-2.4
2,686,850	+		DZA65_RS12530	0.89	-1.0
2,686,851	-		DZA65_RS12530	0.89	+0.0
2,686,851	-		DZA65_RS12530	0.89	-0.5
2,686,851	-		DZA65_RS12530	0.89	-0.6
2,686,851	-		DZA65_RS12530	0.89	-0.4
2,686,851	-		DZA65_RS12530	0.89	-0.1
2,686,851	-		DZA65_RS12530	0.89	-1.0
2,686,851	-		DZA65_RS12530	0.89	-0.6
2,686,851	-		DZA65_RS12530	0.89	+0.9
2,686,854	+		DZA65_RS12530	0.89	-1.2
2,686,854	+		DZA65_RS12530	0.89	+0.2
2,686,855	-		DZA65_RS12530	0.90	-1.2
2,687,056	+				+2.0
2,687,056	+				+1.2
2,687,056	+				+2.5
2,687,056	+				-2.0
2,687,057	-				+0.8
2,687,057	-				-0.6
2,687,057	-				-0.6
2,687,095	+				+0.2
2,687,123	+		DZA65_RS12535	0.14	-1.4
2,687,123	+		DZA65_RS12535	0.14	-0.9
2,687,162	+		DZA65_RS12535	0.34	+2.5
2,687,162	+		DZA65_RS12535	0.34	-0.4
2,687,162	+		DZA65_RS12535	0.34	-0.7
2,687,162	+		DZA65_RS12535	0.34	-0.2
2,687,162	+		DZA65_RS12535	0.34	-0.2
2,687,162	+		DZA65_RS12535	0.34	-0.4
2,687,162	+		DZA65_RS12535	0.34	+0.4
2,687,162	+		DZA65_RS12535	0.34	-0.6
2,687,162	+		DZA65_RS12535	0.34	-0.6
2,687,162	+		DZA65_RS12535	0.34	+0.5
2,687,162	+		DZA65_RS12535	0.34	+0.7
2,687,163	-		DZA65_RS12535	0.35	-0.5
2,687,163	-		DZA65_RS12535	0.35	+0.4
2,687,163	-		DZA65_RS12535	0.35	+1.2
2,687,163	-		DZA65_RS12535	0.35	+0.4
2,687,163	-		DZA65_RS12535	0.35	+0.7
2,687,163	-		DZA65_RS12535	0.35	-0.4
2,687,163	-		DZA65_RS12535	0.35	-1.5
2,687,163	-		DZA65_RS12535	0.35	+0.7
2,687,163	-		DZA65_RS12535	0.35	-0.6
2,687,163	-		DZA65_RS12535	0.35	-0.5
2,687,163	-		DZA65_RS12535	0.35	-1.0
2,687,163	-		DZA65_RS12535	0.35	+0.8
2,687,165	-		DZA65_RS12535	0.36	+0.7
2,687,165	-		DZA65_RS12535	0.36	-0.7
2,687,192	-		DZA65_RS12535	0.50	-1.6
2,687,192	-		DZA65_RS12535	0.50	-1.1
2,687,274	-				-1.4
2,687,326	+				+0.4
2,687,366	+				-0.8
2,687,366	+				-1.6
2,687,366	+				-0.0
2,687,367	-				+0.4
2,687,367	-				+0.7
2,687,369	+				-1.0
2,687,370	-				+0.5
2,687,370	-				+0.4
2,687,505	+				-2.8
2,687,506	-				+0.0
2,687,506	-				+0.4
2,687,692	-		DZA65_RS12540	0.15	+1.0
2,687,777	+		DZA65_RS12540	0.19	-0.4
2,687,981	+		DZA65_RS12540	0.30	+0.7
2,688,018	-		DZA65_RS12540	0.32	-1.1
2,688,020	+		DZA65_RS12540	0.32	-0.9
2,688,020	+		DZA65_RS12540	0.32	-0.4
2,688,029	+		DZA65_RS12540	0.32	-1.8
2,688,029	+		DZA65_RS12540	0.32	-1.1
2,688,029	+		DZA65_RS12540	0.32	-1.0
2,688,029	+		DZA65_RS12540	0.32	-0.9
2,688,030	-		DZA65_RS12540	0.32	+0.4
2,688,030	-		DZA65_RS12540	0.32	-0.6
2,688,030	-		DZA65_RS12540	0.32	+0.6
2,688,030	-		DZA65_RS12540	0.32	-0.9
2,688,074	+		DZA65_RS12540	0.34	-0.1
2,688,075	-		DZA65_RS12540	0.34	+1.4
2,688,314	+		DZA65_RS12540	0.46	+0.8
2,688,314	+		DZA65_RS12540	0.46	-1.6
2,688,314	+		DZA65_RS12540	0.46	-0.6
2,688,314	+		DZA65_RS12540	0.46	-1.2
2,688,314	+		DZA65_RS12540	0.46	+0.8
2,688,315	-		DZA65_RS12540	0.46	-0.6
2,688,315	-		DZA65_RS12540	0.46	+0.4
2,688,315	-		DZA65_RS12540	0.46	-1.1
2,688,315	-		DZA65_RS12540	0.46	-1.6
2,688,315	-		DZA65_RS12540	0.46	+0.7
2,688,463	-		DZA65_RS12540	0.54	-1.2
2,688,471	-		DZA65_RS12540	0.54	-2.2
2,688,524	+		DZA65_RS12540	0.57	-0.1
2,688,665	-		DZA65_RS12540	0.64	+0.4
2,688,697	+		DZA65_RS12540	0.66	+0.7
2,688,697	+		DZA65_RS12540	0.66	-1.6
2,688,697	+		DZA65_RS12540	0.66	-1.4
2,688,698	-		DZA65_RS12540	0.66	-2.6
2,688,806	+		DZA65_RS12540	0.71	-0.9
2,688,806	+		DZA65_RS12540	0.71	-1.6
2,688,806	+		DZA65_RS12540	0.71	-0.1
2,688,807	-		DZA65_RS12540	0.71	-2.0
2,688,807	-		DZA65_RS12540	0.71	+1.0
2,688,852	-		DZA65_RS12540	0.73	+0.2
2,688,852	-		DZA65_RS12540	0.73	+0.9
2,688,852	-		DZA65_RS12540	0.73	-0.6
2,688,861	-		DZA65_RS12540	0.74	-0.1
2,688,878	-		DZA65_RS12540	0.75	-1.0
2,688,926	+		DZA65_RS12540	0.77	-0.5
2,688,926	+		DZA65_RS12540	0.77	-1.4
2,688,926	+		DZA65_RS12540	0.77	+1.4
2,688,927	-		DZA65_RS12540	0.77	+0.4
2,688,929	+		DZA65_RS12540	0.77	-1.6
2,688,930	-		DZA65_RS12540	0.77	+0.6
2,688,930	-		DZA65_RS12540	0.77	-0.0
2,688,945	+		DZA65_RS12540	0.78	-0.1
2,688,945	+		DZA65_RS12540	0.78	-0.8
2,688,946	-		DZA65_RS12540	0.78	+0.2
2,688,957	-		DZA65_RS12540	0.79	-0.2
2,688,971	+		DZA65_RS12540	0.79	+0.0
2,688,971	+		DZA65_RS12540	0.79	-1.0
2,688,971	+		DZA65_RS12540	0.79	+1.4
2,688,972	-		DZA65_RS12540	0.79	-0.6
2,689,077	-		DZA65_RS12540	0.85	-0.9
2,689,127	+		DZA65_RS12540	0.87	-0.4
2,689,128	-		DZA65_RS12540	0.87	-0.9
2,689,149	-		DZA65_RS12540	0.88	-1.1
2,689,154	+		DZA65_RS12540	0.88	-0.1
2,689,162	+		DZA65_RS12540	0.89	-0.3
2,689,188	-				-0.2
2,689,251	-				-0.5
2,689,293	+				-2.4
2,689,308	+				+0.1
2,689,309	-				+0.7
2,689,309	-				+1.4
2,689,309	-				+0.7
2,689,311	+				-2.4
2,689,311	+				-1.1
2,689,311	+				+1.4
2,689,311	+				+0.7
2,689,312	-				-1.1
2,689,312	-				+0.4
2,689,312	-				-1.4
2,689,312	-				-2.0
2,689,380	-				+0.5
2,689,380	-				-0.0
2,689,380	-				-0.1
2,689,380	-				-0.9
2,689,399	-				-2.2
2,689,477	+				-0.2
2,689,486	-				-0.6
2,689,486	-				+0.1
2,689,561	+				-0.1
2,689,568	-				-0.2
2,689,589	+				+0.0
2,689,652	+				-1.2
2,689,653	-				+0.9
2,689,675	+				-0.2
2,689,718	+				+0.7
2,689,723	+				-0.0
2,689,724	-				-0.5
2,689,725	+				+0.8
2,689,725	+				-0.8
2,689,725	+				+3.5
2,689,725	+				-1.5
2,689,725	+				-0.6
2,689,725	+				-0.2
2,689,725	+				+0.6
2,689,726	-				+2.2
2,689,726	-				+0.3
2,689,727	+				+1.1
2,689,727	+				-0.1
2,689,728	-				+1.2
2,689,755	-				+0.0
2,689,755	-				-1.2
2,689,757	-				+1.2
2,689,757	-				-0.5
2,689,759	+				+2.7
2,689,767	+				-0.2
2,689,767	+				+0.1
2,689,787	+				+0.6
2,689,787	+				-1.2
2,689,801	-				-1.5
2,689,801	-				+1.1
2,689,848	-				+0.1
2,689,848	-				-0.6