Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12195

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,604,940	+				-1.3
2,604,940	+				+0.1
2,604,940	+				+1.9
2,604,941	-				+0.7
2,604,941	-				+1.5
2,604,941	-				+0.9
2,604,941	-				+0.3
2,605,006	+				+2.5
2,605,006	+				+0.6
2,605,017	+				+0.1
2,605,017	+				+0.7
2,605,054	+				-1.0
2,605,055	-				+0.3
2,605,061	+				+0.5
2,605,061	+				+0.1
2,605,061	+				-1.3
2,605,061	+				+0.3
2,605,062	-				-0.3
2,605,062	-				+1.3
2,605,141	+				+0.0
2,605,141	+				+0.9
2,605,142	-				-0.9
2,605,142	-				-0.9
2,605,142	-				-1.5
2,605,218	+				-0.1
2,605,218	+				-0.4
2,605,218	+				+0.3
2,605,219	-				-0.2
2,605,219	-				+0.6
2,605,219	-				+0.0
2,605,219	-				-0.1
2,605,219	-				+1.3
2,605,219	-				+1.1
2,605,253	+				-0.3
2,605,253	+				-0.5
2,605,253	+				-0.3
2,605,254	-				-0.0
2,605,254	-				+0.7
2,605,291	+				-1.0
2,605,291	+				+0.9
2,605,428	+		DZA65_RS12190	0.26	+0.3
2,605,428	+		DZA65_RS12190	0.26	+0.6
2,605,429	-		DZA65_RS12190	0.26	-2.3
2,605,429	-		DZA65_RS12190	0.26	-0.9
2,605,429	-		DZA65_RS12190	0.26	+0.0
2,605,479	-		DZA65_RS12190	0.34	-1.7
2,605,525	+		DZA65_RS12190	0.41	-1.6
2,605,526	-		DZA65_RS12190	0.41	-0.4
2,605,526	-		DZA65_RS12190	0.41	+1.1
2,605,526	-		DZA65_RS12190	0.41	-0.1
2,605,526	-		DZA65_RS12190	0.41	+1.1
2,605,526	-		DZA65_RS12190	0.41	-1.4
2,605,526	-		DZA65_RS12190	0.41	-0.2
2,605,592	+		DZA65_RS12190	0.51	+0.9
2,605,592	+		DZA65_RS12190	0.51	-2.3
2,605,592	+				-2.7
2,605,593	-				-1.5
2,605,593	-		DZA65_RS12190	0.51	-0.5
2,605,593	-		DZA65_RS12190	0.51	+0.9
2,605,595	-		DZA65_RS12190	0.52	-1.0
2,605,595	-		DZA65_RS12190	0.52	+0.4
2,605,645	+		DZA65_RS12190	0.60	-0.0
2,605,645	+		DZA65_RS12190	0.60	+0.3
2,605,646	-		DZA65_RS12190	0.60	-1.0
2,605,646	-		DZA65_RS12190	0.60	-1.0
2,605,646	-		DZA65_RS12190	0.60	-0.8
2,605,646	-		DZA65_RS12190	0.60	-1.2
2,605,646	-		DZA65_RS12190	0.60	-1.3
2,605,646	-		DZA65_RS12190	0.60	-0.9
2,605,646	-		DZA65_RS12190	0.60	-1.7
2,605,646	-		DZA65_RS12190	0.60	+0.5
2,605,649	+		DZA65_RS12190	0.60	+1.2
2,605,649	+		DZA65_RS12190	0.60	-0.2
2,605,649	+		DZA65_RS12190	0.60	+0.6
2,605,649	+		DZA65_RS12190	0.60	-0.3
2,605,649	+		DZA65_RS12190	0.60	+0.7
2,605,649	+		DZA65_RS12190	0.60	-3.0
2,605,649	+		DZA65_RS12190	0.60	+1.3
2,605,649	+		DZA65_RS12190	0.60	-1.3
2,605,649	+		DZA65_RS12190	0.60	-0.1
2,605,650	-		DZA65_RS12190	0.60	-1.1
2,605,650	-		DZA65_RS12190	0.60	-0.2
2,605,650	-		DZA65_RS12190	0.60	-2.0
2,605,650	-		DZA65_RS12190	0.60	+0.0
2,605,650	-		DZA65_RS12190	0.60	-0.7
2,605,650	-		DZA65_RS12190	0.60	+0.3
2,605,650	-		DZA65_RS12190	0.60	+2.3
2,605,650	-		DZA65_RS12190	0.60	-0.4
2,605,650	-		DZA65_RS12190	0.60	-0.1
2,605,650	-		DZA65_RS12190	0.60	-0.3
2,605,727	+		DZA65_RS12190	0.72	+0.6
2,605,727	+		DZA65_RS12190	0.72	-0.5
2,605,727	+		DZA65_RS12190	0.72	+0.7
2,605,728	-		DZA65_RS12190	0.72	-2.1
2,605,728	-		DZA65_RS12190	0.72	-1.4
2,605,728	-		DZA65_RS12190	0.72	-0.3
2,605,728	-		DZA65_RS12190	0.72	+1.0
2,605,746	+		DZA65_RS12190	0.75	+1.5
2,605,747	-		DZA65_RS12190	0.75	+1.6
2,605,747	-		DZA65_RS12190	0.75	+0.2
2,605,828	-		DZA65_RS12190	0.88	+1.2
2,605,859	+				-0.6
2,605,860	-				-0.9
2,605,890	+				-0.4
2,605,890	+				+0.2
2,605,890	+				-0.6
2,605,890	+				-0.0
2,605,891	-				-2.1
2,605,892	+				+3.8
2,605,892	+				+3.4
2,605,893	-				-0.7
2,605,893	-				-0.6
2,605,893	-				-0.2
2,605,893	-				-1.5
2,605,893	-				-0.8
2,605,893	-				-0.7
2,605,893	-				-1.7
2,605,933	+				-0.5
2,605,934	-				+0.3
2,605,938	+				-0.3
2,605,938	+				+1.9
2,605,938	+				-1.5
2,605,939	-				+0.4
2,605,997	+				-0.4
2,605,998	-				-0.4
2,605,998	-				-0.9
2,606,176	+		DZA65_RS12195	0.16	-0.7
2,606,176	+		DZA65_RS12195	0.16	-0.3
2,606,364	+		DZA65_RS12195	0.29	-0.1
2,606,364	+		DZA65_RS12195	0.29	-1.0
2,606,364	+		DZA65_RS12195	0.29	+0.3
2,606,364	+		DZA65_RS12195	0.29	+0.3
2,606,365	-		DZA65_RS12195	0.29	-1.3
2,606,387	-		DZA65_RS12195	0.31	-0.4
2,606,412	-		DZA65_RS12195	0.32	-1.8
2,606,425	+		DZA65_RS12195	0.33	-1.7
2,606,425	+		DZA65_RS12195	0.33	-0.7
2,606,426	-		DZA65_RS12195	0.33	-1.1
2,606,452	+		DZA65_RS12195	0.35	-2.0
2,606,613	+		DZA65_RS12195	0.46	+0.1
2,606,901	+		DZA65_RS12195	0.66	+0.9
2,606,986	-		DZA65_RS12195	0.72	-1.7
2,606,986	-		DZA65_RS12195	0.72	-0.0
2,606,986	-		DZA65_RS12195	0.72	-1.9
2,607,002	-		DZA65_RS12195	0.73	+0.8
2,607,020	-		DZA65_RS12195	0.74	+0.5
2,607,026	+		DZA65_RS12195	0.74	-0.0
2,607,027	-		DZA65_RS12195	0.74	-0.8
2,607,029	+		DZA65_RS12195	0.74	-1.1
2,607,030	-		DZA65_RS12195	0.75	-0.0
2,607,037	+		DZA65_RS12195	0.75	-1.7
2,607,037	+		DZA65_RS12195	0.75	-1.0
2,607,037	+		DZA65_RS12195	0.75	+0.5
2,607,037	+		DZA65_RS12195	0.75	-0.7
2,607,037	+		DZA65_RS12195	0.75	-0.3
2,607,037	+		DZA65_RS12195	0.75	-1.4
2,607,037	+		DZA65_RS12195	0.75	+0.9
2,607,037	+		DZA65_RS12195	0.75	-1.7
2,607,037	+		DZA65_RS12195	0.75	+1.9
2,607,037	+		DZA65_RS12195	0.75	-0.1
2,607,037	+		DZA65_RS12195	0.75	-0.2
2,607,038	-		DZA65_RS12195	0.75	-0.7
2,607,038	-		DZA65_RS12195	0.75	-0.7
2,607,038	-		DZA65_RS12195	0.75	+1.7
2,607,038	-		DZA65_RS12195	0.75	-0.7
2,607,038	-		DZA65_RS12195	0.75	+0.8
2,607,038	-		DZA65_RS12195	0.75	-2.7
2,607,042	+		DZA65_RS12195	0.75	+1.5
2,607,042	+		DZA65_RS12195	0.75	+0.7
2,607,042	+		DZA65_RS12195	0.75	-0.2
2,607,043	-		DZA65_RS12195	0.75	-1.9
2,607,043	-		DZA65_RS12195	0.75	+0.1
2,607,043	-		DZA65_RS12195	0.75	-0.9
2,607,043	-		DZA65_RS12195	0.75	-1.3
2,607,043	-		DZA65_RS12195	0.75	-0.5
2,607,055	+		DZA65_RS12195	0.76	-0.7
2,607,055	+		DZA65_RS12195	0.76	-0.3
2,607,055	+		DZA65_RS12195	0.76	-2.3
2,607,055	+		DZA65_RS12195	0.76	-1.3
2,607,055	+		DZA65_RS12195	0.76	+1.0
2,607,056	-		DZA65_RS12195	0.76	-0.0
2,607,056	-				+0.3
2,607,059	+		DZA65_RS12195	0.76	-0.3
2,607,059	+		DZA65_RS12195	0.76	+0.3
2,607,095	+		DZA65_RS12195	0.79	-0.0
2,607,095	+		DZA65_RS12195	0.79	-2.0
2,607,095	+		DZA65_RS12195	0.79	+1.3
2,607,095	+		DZA65_RS12195	0.79	+0.5
2,607,095	+		DZA65_RS12195	0.79	-0.7
2,607,095	+		DZA65_RS12195	0.79	+0.3
2,607,095	+		DZA65_RS12195	0.79	-0.4
2,607,096	-		DZA65_RS12195	0.79	-1.0
2,607,301	+				+0.6
2,607,303	+				-1.7
2,607,303	+				-0.4
2,607,303	+				-1.3
2,607,303	+				-2.5
2,607,303	+				+0.5
2,607,304	-				-2.0
2,607,304	-				-0.9
2,607,304	-				+0.3
2,607,304	-				-1.1
2,607,304	-				+0.5
2,607,304	-				-0.1
2,607,304	-				+0.1
2,607,304	-				-0.1
2,607,304	-				-0.4
2,607,356	+				-0.2
2,607,357	-				-1.2
2,607,357	-				-1.7
2,607,394	+				-0.4
2,607,394	+				-0.5
2,607,394	+				+0.3
2,607,395	-				+1.0
2,607,396	+				+0.1
2,607,396	+				+0.1
2,607,396	+				+0.8
2,607,396	+				+0.3
2,607,396	+				-1.1
2,607,396	+				-0.7
2,607,396	+				-2.8
2,607,396	+				+0.3
2,607,397	-				-0.5
2,607,397	-				-1.1
2,607,397	-				+0.9
2,607,397	-				+1.0
2,607,397	-				+0.4
2,607,398	+				-0.6
2,607,398	+				-1.0
2,607,398	+				-0.2
2,607,398	+				+2.9
2,607,398	+				+0.6
2,607,398	+				+0.3
2,607,398	+				-1.3
2,607,398	+				+0.6
2,607,398	+				-0.3
2,607,398	+				-0.5
2,607,398	+				-0.1
2,607,398	+				+1.9
2,607,398	+				+0.2
2,607,398	+				-0.2
2,607,398	+				-0.2
2,607,398	+				-0.6
2,607,398	+				+3.5
2,607,398	+				-0.3
2,607,398	+				-0.1
2,607,398	+				-0.9
2,607,398	+				-1.1
2,607,398	+				+0.8
2,607,398	+				+1.7
2,607,398	+				-0.4
2,607,398	+				-0.9
2,607,398	+				-0.1
2,607,399	-				-0.5
2,607,399	-				+0.4
2,607,399	-				-0.3
2,607,399	-				-0.0
2,607,399	-				+0.7
2,607,399	-				+0.3
2,607,399	-				-1.1
2,607,399	-				+0.2
2,607,399	-				+0.1
2,607,399	-				-0.9
2,607,399	-				+1.9
2,607,399	-				+1.6
2,607,399	-				-0.0
2,607,399	-				-1.1
2,607,399	-				+0.3
2,607,399	-				-0.1
2,607,399	-				-0.7
2,607,399	-				+1.1
2,607,399	-				+0.0
2,607,399	-				-1.3
2,607,399	-				+0.4
2,607,399	-				+0.4
2,607,399	-				+0.8
2,607,399	-				-0.9
2,607,399	-				-2.0
2,607,424	+				+0.7
2,607,424	+				-0.3
2,607,424	+				+0.3
2,607,425	-				-0.1
2,607,628	-				+0.5
2,607,632	+				-0.7
2,607,632	+				-1.1
2,607,632	+				+0.8
2,607,633	-				-1.5
2,607,670	+				-1.1
2,607,695	-				+0.7
2,607,724	-				-0.2
2,607,734	+		DZA65_RS12200	0.12	-0.5
2,607,766	+		DZA65_RS12200	0.17	-0.3
2,607,766	+		DZA65_RS12200	0.17	-1.1
2,607,767	-		DZA65_RS12200	0.18	+0.6
2,607,767	-		DZA65_RS12200	0.18	+1.2
2,607,767	-		DZA65_RS12200	0.18	+0.6
2,607,767	-		DZA65_RS12200	0.18	-0.3
2,607,804	-		DZA65_RS12200	0.24	-0.0
2,607,870	-		DZA65_RS12200	0.36	-1.3
2,608,057	+		DZA65_RS12200	0.70	-0.7
2,608,058	-		DZA65_RS12200	0.70	+0.0
2,608,071	+		DZA65_RS12200	0.72	-2.3
2,608,072	-		DZA65_RS12200	0.73	+0.8
2,608,098	+		DZA65_RS12200	0.77	-0.3
2,608,243	+				-0.5
2,608,243	+				-1.3
2,608,243	+				-0.9