Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12155

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,598,327	+		DZA65_RS12150	0.75	+1.5
2,598,327	+		DZA65_RS12150	0.75	-2.3
2,598,328	-		DZA65_RS12150	0.75	+1.8
2,598,328	-		DZA65_RS12150	0.75	+0.4
2,598,328	-		DZA65_RS12150	0.75	-1.7
2,598,328	-		DZA65_RS12150	0.75	-0.7
2,598,382	+		DZA65_RS12150	0.80	+1.6
2,598,382	+		DZA65_RS12150	0.80	+1.3
2,598,383	-		DZA65_RS12150	0.80	-0.4
2,598,383	-		DZA65_RS12150	0.80	-0.5
2,598,614	+				-0.7
2,598,615	-				-0.9
2,598,645	-				-0.9
2,598,645	-				+1.1
2,598,645	-				+0.3
2,598,782	+				-2.9
2,598,782	+				-2.1
2,598,783	-				-2.0
2,598,783	-				-0.1
2,598,837	-				-0.7
2,598,837	-				-1.1
2,598,855	-				+1.6
2,598,865	+				+0.0
2,598,865	+				+0.3
2,598,866	-				+0.1
2,598,866	-				-1.0
2,598,897	+				-0.5
2,598,898	-				-0.5
2,598,898	-				+1.0
2,598,898	-				-1.0
2,599,087	+				-0.4
2,599,087	+				-0.5
2,599,088	-				-0.1
2,599,088	-				+0.3
2,599,088	-				-0.3
2,599,088	-				+1.5
2,599,089	+				-0.1
2,599,089	+				+4.7
2,599,089	+				-0.5
2,599,089	+				-1.5
2,599,090	-				-0.1
2,599,090	-				-0.7
2,599,090	-				+0.3
2,599,090	-				+0.3
2,599,090	-				-0.3
2,599,090	-				-0.3
2,599,090	-				+0.0
2,599,090	-				-0.7
2,599,090	-				+2.7
2,599,120	-				+2.8
2,599,120	-				-1.5
2,599,151	+				-0.8
2,599,151	+				-0.5
2,599,152	-				-0.1
2,599,173	-				-0.0
2,599,224	-				+0.2
2,599,243	-				+1.3
2,599,387	+				+0.1
2,599,388	-				+0.3
2,599,388	-				-0.9
2,599,388	-				+2.6
2,599,388	-				+1.8
2,599,444	+				+2.1
2,599,444	+				-0.5
2,599,444	+				+0.3
2,599,445	-				+0.6
2,599,445	-				+0.5
2,599,582	+		DZA65_RS12155	0.20	-0.7
2,599,582	+		DZA65_RS12155	0.20	-0.7
2,599,583	-		DZA65_RS12155	0.20	-2.4
2,599,583	-		DZA65_RS12155	0.20	-0.5
2,599,591	+		DZA65_RS12155	0.21	+0.3
2,599,591	+		DZA65_RS12155	0.21	+1.1
2,599,591	+		DZA65_RS12155	0.21	+2.3
2,599,598	+		DZA65_RS12155	0.22	+1.9
2,599,599	-		DZA65_RS12155	0.22	+5.1
2,599,600	+		DZA65_RS12155	0.22	-0.4
2,599,600	+		DZA65_RS12155	0.22	+0.7
2,599,600	+		DZA65_RS12155	0.22	-0.2
2,599,600	+		DZA65_RS12155	0.22	+1.3
2,599,600	+		DZA65_RS12155	0.22	+0.6
2,599,601	-		DZA65_RS12155	0.22	+0.3
2,599,618	+		DZA65_RS12155	0.23	+0.3
2,599,850	+		DZA65_RS12155	0.41	+1.1
2,599,850	+		DZA65_RS12155	0.41	-0.8
2,599,851	-		DZA65_RS12155	0.41	+0.2
2,599,851	-		DZA65_RS12155	0.41	-0.1
2,599,851	-		DZA65_RS12155	0.41	-2.3
2,599,852	+		DZA65_RS12155	0.41	-0.3
2,599,852	+		DZA65_RS12155	0.41	+0.1
2,599,852	+		DZA65_RS12155	0.41	+0.5
2,599,852	+		DZA65_RS12155	0.41	+1.0
2,599,852	+		DZA65_RS12155	0.41	+0.2
2,599,852	+		DZA65_RS12155	0.41	+0.7
2,599,852	+		DZA65_RS12155	0.41	-0.3
2,599,852	+		DZA65_RS12155	0.41	+0.5
2,599,852	+		DZA65_RS12155	0.41	-0.6
2,599,853	-		DZA65_RS12155	0.41	-2.3
2,599,853	-		DZA65_RS12155	0.41	+0.1
2,599,853	-		DZA65_RS12155	0.41	+2.2
2,599,853	-		DZA65_RS12155	0.41	-0.4
2,599,853	-		DZA65_RS12155	0.41	-1.0
2,599,853	-		DZA65_RS12155	0.41	-0.1
2,599,853	-		DZA65_RS12155	0.41	+0.1
2,599,853	-		DZA65_RS12155	0.41	+0.7
2,599,853	-				+3.3
2,599,853	-		DZA65_RS12155	0.41	+0.2
2,599,853	-		DZA65_RS12155	0.41	+1.6
2,599,853	-		DZA65_RS12155	0.41	-2.1
2,599,853	-		DZA65_RS12155	0.41	-1.3
2,599,930	+		DZA65_RS12155	0.47	+0.3
2,599,939	+		DZA65_RS12155	0.48	-0.5
2,599,939	+		DZA65_RS12155	0.48	+1.3
2,599,939	+		DZA65_RS12155	0.48	+0.1
2,599,939	+		DZA65_RS12155	0.48	-0.1
2,599,940	-		DZA65_RS12155	0.48	-1.3
2,599,940	-		DZA65_RS12155	0.48	+0.6
2,599,992	+		DZA65_RS12155	0.52	-0.4
2,599,993	-		DZA65_RS12155	0.52	+0.6
2,599,993	-		DZA65_RS12155	0.52	-1.1
2,600,032	-		DZA65_RS12155	0.55	+0.5
2,600,071	+		DZA65_RS12155	0.58	-1.3
2,600,072	-		DZA65_RS12155	0.58	+0.4
2,600,077	+		DZA65_RS12155	0.58	-0.7
2,600,077	+		DZA65_RS12155	0.58	+0.0
2,600,077	+		DZA65_RS12155	0.58	+0.3
2,600,077	+		DZA65_RS12155	0.58	-1.7
2,600,077	+		DZA65_RS12155	0.58	-1.1
2,600,077	+		DZA65_RS12155	0.58	+0.9
2,600,077	+		DZA65_RS12155	0.58	-0.3
2,600,078	-		DZA65_RS12155	0.58	+1.6
2,600,078	-		DZA65_RS12155	0.58	-0.4
2,600,078	-		DZA65_RS12155	0.58	+0.6
2,600,078	-		DZA65_RS12155	0.58	-0.3
2,600,078	-		DZA65_RS12155	0.58	+1.1
2,600,080	+		DZA65_RS12155	0.58	-0.9
2,600,080	+		DZA65_RS12155	0.58	-0.5
2,600,081	-		DZA65_RS12155	0.58	-0.1
2,600,134	+		DZA65_RS12155	0.62	+0.6
2,600,135	-		DZA65_RS12155	0.62	-1.3
2,600,135	-		DZA65_RS12155	0.62	-1.3
2,600,208	+		DZA65_RS12155	0.68	+2.4
2,600,219	-		DZA65_RS12155	0.69	-1.3
2,600,219	-		DZA65_RS12155	0.69	+1.0
2,600,226	-		DZA65_RS12155	0.69	+0.9
2,600,226	-		DZA65_RS12155	0.69	+1.5
2,600,226	-		DZA65_RS12155	0.69	-0.1
2,600,278	+				+0.3
2,600,279	-		DZA65_RS12155	0.73	-0.2
2,600,279	-		DZA65_RS12155	0.73	+0.6
2,600,279	-		DZA65_RS12155	0.73	+0.2
2,600,279	-		DZA65_RS12155	0.73	+0.3
2,600,364	-				+1.6
2,600,547	+				-0.3
2,600,547	+				+0.3
2,600,547	+				-0.1
2,600,548	-				-0.4
2,600,548	-				+2.6
2,600,548	-				-1.1
2,600,548	-				-0.7
2,600,548	-				+0.1
2,600,621	+				+1.2
2,600,621	+				-0.6
2,600,622	-				+0.6
2,600,622	-				+0.0
2,600,633	+				-1.1
2,600,633	+				+0.1
2,600,640	+				-0.8
2,600,659	-				-2.7
2,600,659	-				-0.6
2,600,659	-				+0.2
2,600,671	+				-1.3
2,600,672	-				-0.7
2,600,672	-				-0.6
2,600,688	+				+0.9
2,600,688	+				+0.2
2,600,689	-				+1.5
2,600,689	-				+1.3
2,600,689	-				-1.4
2,600,689	-				+0.3
2,600,693	+				+0.1
2,600,694	-				-1.8
2,600,694	-				+1.3
2,600,697	-				+0.6
2,600,737	+				-1.7
2,600,737	+				-0.2
2,600,737	+				-0.3
2,600,737	+				-0.7
2,600,737	+				+0.5
2,600,737	+				-2.8
2,600,737	+				-2.8
2,600,737	+				+1.3
2,600,737	+				+0.3
2,600,737	+				-0.6
2,600,737	+				-0.9
2,600,737	+				-0.6
2,600,738	-				+0.7
2,600,738	-				+0.4
2,600,738	-				+1.3
2,600,738	-				-0.9
2,600,738	-				-0.5
2,600,738	-				-0.7
2,600,738	-				+1.9
2,600,763	+				+0.7
2,600,767	-				+0.9
2,600,767	-				+1.6
2,600,767	-				+0.5
2,600,767	-				+0.8
2,600,769	+				+0.6
2,600,769	+				+1.9
2,600,769	+				-2.5
2,600,769	+				-0.2
2,600,769	+				-0.7
2,600,769	+				+0.7
2,600,769	+				-0.2
2,600,769	+				-0.3
2,600,769	+				-1.4
2,600,769	+				+1.9
2,600,769	+				+1.2
2,600,769	+				-0.4
2,600,769	+				-0.8
2,600,769	+				-0.4
2,600,769	+				+0.1
2,600,769	+				+0.3
2,600,769	+				+0.3
2,600,769	+				+1.2
2,600,770	-				-0.7
2,600,770	-				+0.3
2,600,770	-				+0.7
2,600,770	-				+0.0
2,600,770	-				-0.2
2,600,770	-				+0.5
2,600,770	-				-0.3
2,600,770	-				+0.1
2,600,770	-				-0.1
2,600,770	-				+0.8
2,600,770	-				+0.0
2,600,770	-				-0.9
2,600,770	-				-0.3
2,600,770	-				-0.7
2,600,770	-				+0.3
2,600,770	-				+0.3
2,600,791	+				-0.7
2,600,791	+				+1.1
2,600,791	+				-0.2
2,600,791	+				+2.5
2,600,791	+				-0.1
2,600,792	-				+2.0
2,600,792	-				-3.3
2,600,792	-				-0.7
2,601,020	+		DZA65_RS12160	0.33	-1.7
2,601,021	-		DZA65_RS12160	0.33	+0.7
2,601,021	-		DZA65_RS12160	0.33	-0.7
2,601,021	-		DZA65_RS12160	0.33	-2.7
2,601,426	+				-1.3
2,601,426	+				-0.4
2,601,426	+				-2.0
2,601,426	+				-0.5
2,601,426	+				-0.2
2,601,426	+				-1.5
2,601,426	+				-2.0
2,601,426	+				+0.8
2,601,426	+				-0.5
2,601,427	-				+1.2
2,601,427	-				-0.1
2,601,427	-				-2.7
2,601,427	-				-0.7
2,601,427	-				-1.7
2,601,427	-				-0.9
2,601,427	-				+1.2
2,601,427	-				-0.0
2,601,427	-				-2.7
2,601,427	-				+0.3
2,601,427	-				-0.5
2,601,427	-				-0.7
2,601,427	-				-0.7
2,601,427	-				+2.5
2,601,457	+				-1.7
2,601,457	+				-1.1
2,601,457	+				+1.2
2,601,457	+				-0.1
2,601,457	+				+0.2
2,601,458	-				-1.3
2,601,458	-				+1.1
2,601,466	+				-1.7
2,601,471	+				-0.0
2,601,471	+				-0.8
2,601,472	-				+0.4
2,601,507	-				+0.7
2,601,514	+				-0.6
2,601,519	+				-0.4
2,601,519	+				-0.3
2,601,520	-				-1.3
2,601,520	-				+0.2
2,601,526	+				+0.1
2,601,539	-				+0.7