Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11605

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,475,562	+		DZA65_RS11600	0.39	+0.4
2,475,632	+		DZA65_RS11600	0.46	-1.1
2,475,632	+		DZA65_RS11600	0.46	-0.8
2,475,632	+				-1.7
2,475,632	+		DZA65_RS11600	0.46	-0.1
2,475,632	+		DZA65_RS11600	0.46	+1.4
2,475,633	-		DZA65_RS11600	0.46	-1.0
2,475,633	-		DZA65_RS11600	0.46	+0.1
2,475,633	-		DZA65_RS11600	0.46	-0.5
2,475,633	-		DZA65_RS11600	0.46	-1.7
2,475,768	+		DZA65_RS11600	0.58	-0.3
2,475,768	+		DZA65_RS11600	0.58	+0.6
2,475,768	+		DZA65_RS11600	0.58	-0.0
2,475,769	-		DZA65_RS11600	0.58	-0.3
2,475,769	-		DZA65_RS11600	0.58	-1.3
2,475,769	-		DZA65_RS11600	0.58	+0.3
2,475,769	-		DZA65_RS11600	0.58	-0.7
2,475,769	-		DZA65_RS11600	0.58	+1.6
2,475,769	-		DZA65_RS11600	0.58	-1.8
2,475,789	+		DZA65_RS11600	0.60	+1.2
2,475,847	+		DZA65_RS11600	0.65	+0.5
2,475,848	-		DZA65_RS11600	0.65	-1.3
2,475,848	-		DZA65_RS11600	0.65	-0.2
2,475,894	+		DZA65_RS11600	0.69	-0.0
2,475,895	-		DZA65_RS11600	0.69	-0.1
2,475,973	+		DZA65_RS11600	0.76	-0.4
2,476,101	+		DZA65_RS11600	0.88	-1.9
2,476,101	+		DZA65_RS11600	0.88	+0.5
2,476,101	+		DZA65_RS11600	0.88	-0.5
2,476,101	+		DZA65_RS11600	0.88	-0.8
2,476,101	+		DZA65_RS11600	0.88	-0.2
2,476,101	+		DZA65_RS11600	0.88	+0.6
2,476,101	+		DZA65_RS11600	0.88	+0.8
2,476,101	+		DZA65_RS11600	0.88	-0.1
2,476,102	-		DZA65_RS11600	0.88	-1.0
2,476,102	-		DZA65_RS11600	0.88	+0.3
2,476,102	-		DZA65_RS11600	0.88	+0.6
2,476,102	-		DZA65_RS11600	0.88	-2.0
2,476,102	-		DZA65_RS11600	0.88	-0.4
2,476,131	+				-1.7
2,476,131	+				-0.4
2,476,131	+				+0.3
2,476,131	+				-0.7
2,476,131	+				-1.0
2,476,131	+				+0.3
2,476,131	+				+0.1
2,476,131	+				+0.6
2,476,131	+				+1.5
2,476,131	+				+0.0
2,476,131	+				+0.6
2,476,131	+				+0.8
2,476,131	+				-0.7
2,476,131	+				-1.0
2,476,131	+				+0.8
2,476,132	-				+0.5
2,476,132	-				+2.5
2,476,132	-				+0.3
2,476,132	-				+0.3
2,476,132	-				+0.6
2,476,132	-				-0.9
2,476,132	-				-1.1
2,476,132	-				+0.4
2,476,132	-				-0.7
2,476,132	-				+0.1
2,476,132	-				+0.3
2,476,132	-				+1.3
2,476,132	-				+0.4
2,476,132	-				+0.6
2,476,136	-				-1.3
2,476,206	-				-0.7
2,476,219	+				+1.3
2,476,220	-				-0.0
2,476,222	+				+1.6
2,476,222	+				-0.8
2,476,223	-				+0.3
2,476,223	-				+0.4
2,476,233	+				+1.6
2,476,247	-				+1.9
2,476,352	+				-0.4
2,476,353	-				-1.6
2,476,353	-				+0.7
2,476,412	+				-1.7
2,476,425	+				+0.4
2,476,425	+				+0.4
2,476,425	+				+0.3
2,476,426	-				-0.8
2,476,596	-				-1.7
2,476,671	+		DZA65_RS11605	0.14	+1.0
2,476,715	-		DZA65_RS11605	0.16	+0.5
2,476,984	+		DZA65_RS11605	0.33	+0.2
2,476,984	+		DZA65_RS11605	0.33	+0.5
2,476,984	+		DZA65_RS11605	0.33	-2.0
2,476,984	+		DZA65_RS11605	0.33	-1.7
2,476,984	+		DZA65_RS11605	0.33	+0.3
2,476,985	-		DZA65_RS11605	0.33	-0.3
2,477,041	+				-1.0
2,477,041	+		DZA65_RS11605	0.36	-0.9
2,477,042	-		DZA65_RS11605	0.36	-0.7
2,477,225	+		DZA65_RS11605	0.47	+1.0
2,477,225	+		DZA65_RS11605	0.47	-0.7
2,477,226	-		DZA65_RS11605	0.47	-1.8
2,477,332	+		DZA65_RS11605	0.53	-0.6
2,477,333	-		DZA65_RS11605	0.53	+0.5
2,477,373	+		DZA65_RS11605	0.56	+1.3
2,477,374	-		DZA65_RS11605	0.56	+0.6
2,477,386	+		DZA65_RS11605	0.57	+0.3
2,477,420	+		DZA65_RS11605	0.59	+0.3
2,477,420	+		DZA65_RS11605	0.59	+0.7
2,477,421	-		DZA65_RS11605	0.59	+1.9
2,477,421	-		DZA65_RS11605	0.59	+0.3
2,477,473	+		DZA65_RS11605	0.62	+0.3
2,477,473	+		DZA65_RS11605	0.62	+1.1
2,477,474	-		DZA65_RS11605	0.62	+0.6
2,477,474	-		DZA65_RS11605	0.62	+0.4
2,477,474	-		DZA65_RS11605	0.62	+0.4
2,477,474	-		DZA65_RS11605	0.62	-0.9
2,477,518	+		DZA65_RS11605	0.65	-0.3
2,477,518	+		DZA65_RS11605	0.65	+0.3
2,477,518	+		DZA65_RS11605	0.65	+0.4
2,477,518	+		DZA65_RS11605	0.65	+0.9
2,477,519	-		DZA65_RS11605	0.65	+0.3
2,477,519	-		DZA65_RS11605	0.65	-1.3
2,477,519	-		DZA65_RS11605	0.65	+0.3
2,477,519	-		DZA65_RS11605	0.65	+1.1
2,477,578	+		DZA65_RS11605	0.68	+0.3
2,477,579	-		DZA65_RS11605	0.68	-1.3
2,477,579	-		DZA65_RS11605	0.68	+0.7
2,477,579	-		DZA65_RS11605	0.68	-0.3
2,477,579	-		DZA65_RS11605	0.68	-0.2
2,477,602	+		DZA65_RS11605	0.70	+0.5
2,477,602	+		DZA65_RS11605	0.70	+0.3
2,477,602	+		DZA65_RS11605	0.70	+0.3
2,477,602	+		DZA65_RS11605	0.70	-0.6
2,477,602	+		DZA65_RS11605	0.70	-0.8
2,477,602	+		DZA65_RS11605	0.70	+0.1
2,477,602	+		DZA65_RS11605	0.70	-0.3
2,477,602	+		DZA65_RS11605	0.70	+1.1
2,477,603	-		DZA65_RS11605	0.70	-0.4
2,477,603	-		DZA65_RS11605	0.70	+0.7
2,477,603	-		DZA65_RS11605	0.70	+0.3
2,477,618	+		DZA65_RS11605	0.70	+0.1
2,477,692	+		DZA65_RS11605	0.75	+1.1
2,477,692	+		DZA65_RS11605	0.75	+0.0
2,477,692	+		DZA65_RS11605	0.75	+0.5
2,477,692	+		DZA65_RS11605	0.75	-0.1
2,477,692	+		DZA65_RS11605	0.75	-1.7
2,477,693	-		DZA65_RS11605	0.75	+1.8
2,477,693	-		DZA65_RS11605	0.75	+0.5
2,477,693	-		DZA65_RS11605	0.75	-1.0
2,477,693	-		DZA65_RS11605	0.75	-0.9
2,477,693	-		DZA65_RS11605	0.75	+0.9
2,477,693	-		DZA65_RS11605	0.75	-1.7
2,477,786	+		DZA65_RS11605	0.81	+1.3
2,477,787	-		DZA65_RS11605	0.81	+0.2
2,477,788	+		DZA65_RS11605	0.81	-0.7
2,477,788	+		DZA65_RS11605	0.81	-1.3
2,477,788	+		DZA65_RS11605	0.81	+0.7
2,477,788	+		DZA65_RS11605	0.81	-1.5
2,477,985	-				-0.2
2,478,004	+				+2.6
2,478,046	+				-0.5
2,478,046	+				-1.1
2,478,047	-				+0.5
2,478,094	-				-0.4
2,478,135	-				-0.3
2,478,135	-				-0.4
2,478,143	+				+0.8
2,478,143	+				+1.9
2,478,190	+				+1.3
2,478,310	+				-0.6
2,478,326	+				-0.8
2,478,327	-				-1.5
2,478,327	-				+0.7
2,478,327	-				-0.5
2,478,327	-				-1.4
2,478,327	-				-0.4
2,478,327	-				-1.3
2,478,469	+		DZA65_RS11610	0.19	-1.0
2,478,469	+		DZA65_RS11610	0.19	+0.1
2,478,470	-		DZA65_RS11610	0.19	+0.3
2,478,498	+		DZA65_RS11610	0.24	-1.3
2,478,499	-		DZA65_RS11610	0.24	-2.7
2,478,516	-		DZA65_RS11610	0.27	+0.3
2,478,516	-		DZA65_RS11610	0.27	-2.0
2,478,517	+		DZA65_RS11610	0.27	-0.1
2,478,518	-		DZA65_RS11610	0.27	-0.3
2,478,518	-		DZA65_RS11610	0.27	+0.3
2,478,518	-		DZA65_RS11610	0.27	+0.9
2,478,518	-		DZA65_RS11610	0.27	+0.7
2,478,541	+		DZA65_RS11610	0.31	-0.4
2,478,541	+		DZA65_RS11610	0.31	+1.1
2,478,541	+		DZA65_RS11610	0.31	+0.7
2,478,541	+		DZA65_RS11610	0.31	-0.4
2,478,542	-		DZA65_RS11610	0.31	-0.3
2,478,542	-		DZA65_RS11610	0.31	-0.3
2,478,542	-		DZA65_RS11610	0.31	-1.7
2,478,542	-		DZA65_RS11610	0.31	-1.2
2,478,542	-		DZA65_RS11610	0.31	+0.5
2,478,542	-		DZA65_RS11610	0.31	-0.8
2,478,617	+		DZA65_RS11610	0.44	+0.0
2,478,649	+		DZA65_RS11610	0.49	-0.0
2,478,650	-		DZA65_RS11610	0.50	+1.2
2,478,650	-		DZA65_RS11610	0.50	-0.9
2,478,650	-		DZA65_RS11610	0.50	+0.6
2,478,796	+		DZA65_RS11610	0.75	+1.0
2,478,796	+		DZA65_RS11610	0.75	-1.6
2,478,797	-		DZA65_RS11610	0.75	+0.3
2,478,797	-		DZA65_RS11610	0.75	+0.9
2,478,909	+				+1.0
2,478,909	+				+0.2
2,478,910	-				+1.8
2,478,953	+				-1.1
2,478,953	+				+1.6
2,478,954	-				-0.7
2,478,954	-				-0.1
2,478,954	-				-0.7
2,478,971	+				-1.1
2,478,971	+				-0.2
2,478,972	-				-0.1
2,478,989	+				+0.1
2,478,990	-				-0.6
2,478,990	-				+0.8
2,478,990	-				-3.4
2,479,018	+				-0.2
2,479,018	+				-0.1
2,479,018	+				+2.6
2,479,018	+				-0.1
2,479,018	+				+0.9
2,479,018	+				+0.0
2,479,019	-				-1.7
2,479,019	-				+0.8
2,479,019	-				+0.5
2,479,019	-				-0.2
2,479,019	-				-2.3
2,479,044	+				-1.7
2,479,053	+				-1.3
2,479,053	+				+0.4
2,479,053	+				-0.8
2,479,054	-				+0.8
2,479,054	-				+0.7
2,479,054	-				+1.0
2,479,054	-				-0.6
2,479,062	+				-0.8
2,479,062	+				+0.1
2,479,062	+				+1.9
2,479,062	+				-1.4
2,479,062	+				-0.1
2,479,063	-				-1.5
2,479,063	-				+0.3
2,479,063	-				+0.2
2,479,063	-				-1.0
2,479,063	-				+0.3
2,479,069	+				-0.7
2,479,070	-				+1.1
2,479,085	+				-0.4
2,479,085	+				+0.6
2,479,085	+				-0.2
2,479,085	+				-1.9
2,479,086	-				+0.1
2,479,098	+				-1.1
2,479,098	+				+0.6
2,479,098	+				-0.7
2,479,099	-				+0.4
2,479,099	-				-2.5
2,479,099	-				+1.0
2,479,099	-				+0.3
2,479,099	-				-1.1
2,479,099	-				+0.7
2,479,106	-				-0.7