Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11215

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,373,848	+		DZA65_RS11200	0.54	+0.6
2,373,895	-		DZA65_RS11200	0.61	+0.4
2,373,902	+		DZA65_RS11200	0.62	+1.1
2,373,914	+		DZA65_RS11200	0.63	-0.4
2,373,914	+		DZA65_RS11200	0.63	-2.0
2,373,915	-		DZA65_RS11200	0.64	-1.3
2,373,964	+		DZA65_RS11200	0.71	+0.6
2,373,965	-		DZA65_RS11200	0.71	+1.3
2,374,017	+		DZA65_RS11200	0.78	-0.3
2,374,017	+		DZA65_RS11200	0.78	-0.5
2,374,019	+		DZA65_RS11200	0.78	+0.3
2,374,019	+		DZA65_RS11200	0.78	-0.1
2,374,019	+		DZA65_RS11200	0.78	-1.3
2,374,071	-		DZA65_RS11200	0.86	+1.3
2,374,088	+		DZA65_RS11200	0.88	-0.3
2,374,088	+		DZA65_RS11200	0.88	+1.3
2,374,089	-		DZA65_RS11200	0.88	+0.3
2,374,090	+				-1.3
2,374,091	-		DZA65_RS11200	0.89	-0.1
2,374,091	-		DZA65_RS11200	0.89	+0.7
2,374,091	-		DZA65_RS11200	0.89	+0.3
2,374,091	-		DZA65_RS11200	0.89	+0.3
2,374,167	+				+2.5
2,374,256	+				-0.0
2,374,256	+				+0.5
2,374,295	-				-0.9
2,374,295	-				+0.9
2,374,295	-				+0.0
2,374,351	+				+1.0
2,374,351	+				-0.0
2,374,352	-				-0.6
2,374,352	-				-0.7
2,374,379	-				+1.0
2,374,497	+		DZA65_RS11210	0.29	-0.8
2,374,498	-		DZA65_RS11210	0.30	-1.9
2,374,498	-		DZA65_RS11210	0.30	-0.9
2,374,727	-				+0.6
2,374,771	+				-2.0
2,374,771	+				-2.3
2,374,772	-				-0.1
2,374,772	-				-0.3
2,374,804	+				-0.8
2,374,815	+				-0.1
2,374,815	+				-0.0
2,374,816	-				-1.0
2,374,824	+				+0.9
2,374,824	+				-0.2
2,374,824	+				+1.8
2,374,824	+				-0.2
2,374,824	+				+0.3
2,374,824	+				+1.9
2,374,824	+				+1.3
2,374,824	+				+0.7
2,374,824	+				+0.9
2,374,824	+				+1.0
2,374,824	+				-0.4
2,374,825	-				-0.6
2,374,825	-				+0.3
2,374,825	-				+0.7
2,374,825	-				-1.5
2,374,850	+				+0.1
2,374,858	-				+0.8
2,374,877	+				-1.0
2,374,877	+				-1.2
2,374,877	+				-0.9
2,374,906	+				+1.4
2,374,906	+				-0.3
2,374,906	+				-1.1
2,374,909	-				-3.6
2,374,925	+				-2.3
2,374,925	+				-2.0
2,374,926	-				+1.5
2,374,959	+				+0.3
2,374,959	+				+0.5
2,374,959	+				-0.8
2,374,960	-				+0.3
2,375,017	+				-0.4
2,375,017	+		DZA65_RS11215	0.11	+1.3
2,375,017	+		DZA65_RS11215	0.11	+0.1
2,375,017	+		DZA65_RS11215	0.11	-2.2
2,375,018	-		DZA65_RS11215	0.11	-0.7
2,375,092	-		DZA65_RS11215	0.15	+0.9
2,375,119	-		DZA65_RS11215	0.16	+0.2
2,375,148	+		DZA65_RS11215	0.18	-2.3
2,375,148	+		DZA65_RS11215	0.18	+1.4
2,375,148	+		DZA65_RS11215	0.18	-0.1
2,375,149	-		DZA65_RS11215	0.18	-0.9
2,375,149	-		DZA65_RS11215	0.18	-1.5
2,375,152	+		DZA65_RS11215	0.18	-1.9
2,375,189	+		DZA65_RS11215	0.20	+0.8
2,375,236	+		DZA65_RS11215	0.22	-1.3
2,375,236	+		DZA65_RS11215	0.22	-0.3
2,375,236	+		DZA65_RS11215	0.22	-1.5
2,375,236	+		DZA65_RS11215	0.22	+2.2
2,375,236	+		DZA65_RS11215	0.22	-0.0
2,375,236	+		DZA65_RS11215	0.22	-1.0
2,375,236	+		DZA65_RS11215	0.22	+0.1
2,375,237	-		DZA65_RS11215	0.23	+0.5
2,375,237	-		DZA65_RS11215	0.23	-0.7
2,375,237	-		DZA65_RS11215	0.23	-1.4
2,375,237	-		DZA65_RS11215	0.23	+2.0
2,375,271	+		DZA65_RS11215	0.24	-0.2
2,375,271	+		DZA65_RS11215	0.24	-1.7
2,375,272	-		DZA65_RS11215	0.24	-0.4
2,375,281	-		DZA65_RS11215	0.25	-0.3
2,375,346	+		DZA65_RS11215	0.28	-1.0
2,375,347	-		DZA65_RS11215	0.28	+0.3
2,375,347	-		DZA65_RS11215	0.28	+0.1
2,375,347	-		DZA65_RS11215	0.28	-0.1
2,375,357	+		DZA65_RS11215	0.29	+2.3
2,375,357	+		DZA65_RS11215	0.29	-2.7
2,375,394	-		DZA65_RS11215	0.31	-1.6
2,375,506	+		DZA65_RS11215	0.37	-0.3
2,375,507	-		DZA65_RS11215	0.37	+1.4
2,375,507	-		DZA65_RS11215	0.37	-0.6
2,375,555	-		DZA65_RS11215	0.40	-0.4
2,375,562	-		DZA65_RS11215	0.40	+0.4
2,375,588	-		DZA65_RS11215	0.41	+0.0
2,375,588	-		DZA65_RS11215	0.41	+0.3
2,375,607	+		DZA65_RS11215	0.42	-2.7
2,375,607	+				+1.9
2,375,607	+		DZA65_RS11215	0.42	-0.3
2,375,607	+		DZA65_RS11215	0.42	-2.5
2,375,608	-		DZA65_RS11215	0.42	-2.0
2,375,634	+		DZA65_RS11215	0.44	+1.2
2,375,634	+		DZA65_RS11215	0.44	-0.9
2,375,634	+		DZA65_RS11215	0.44	+0.5
2,375,634	+				+1.3
2,375,635	-		DZA65_RS11215	0.44	-0.6
2,375,635	-		DZA65_RS11215	0.44	-0.9
2,375,635	-		DZA65_RS11215	0.44	-0.7
2,375,637	+		DZA65_RS11215	0.44	+0.3
2,375,637	+		DZA65_RS11215	0.44	-0.6
2,375,637	+		DZA65_RS11215	0.44	-2.2
2,375,637	+		DZA65_RS11215	0.44	-1.3
2,375,638	-		DZA65_RS11215	0.44	-1.6
2,375,672	+		DZA65_RS11215	0.46	+0.8
2,375,673	-		DZA65_RS11215	0.46	-1.5
2,375,673	-		DZA65_RS11215	0.46	-2.7
2,375,682	+		DZA65_RS11215	0.46	+0.4
2,375,682	+		DZA65_RS11215	0.46	-1.4
2,375,725	-		DZA65_RS11215	0.49	-1.0
2,375,725	-		DZA65_RS11215	0.49	+0.4
2,375,812	+		DZA65_RS11215	0.53	+0.7
2,375,825	-		DZA65_RS11215	0.54	-1.1
2,375,911	+		DZA65_RS11215	0.59	+0.0
2,375,911	+		DZA65_RS11215	0.59	-1.3
2,375,911	+		DZA65_RS11215	0.59	-1.3
2,375,912	-		DZA65_RS11215	0.59	-0.0
2,375,912	-		DZA65_RS11215	0.59	+1.7
2,375,912	-		DZA65_RS11215	0.59	-0.5
2,375,916	+		DZA65_RS11215	0.59	-0.7
2,375,959	+		DZA65_RS11215	0.61	-0.0
2,375,959	+		DZA65_RS11215	0.61	-2.0
2,375,959	+		DZA65_RS11215	0.61	-0.7
2,375,959	+		DZA65_RS11215	0.61	+0.8
2,375,959	+		DZA65_RS11215	0.61	+0.1
2,375,960	-		DZA65_RS11215	0.61	-0.5
2,375,960	-		DZA65_RS11215	0.61	-0.6
2,375,960	-		DZA65_RS11215	0.61	+0.0
2,375,960	-		DZA65_RS11215	0.61	+1.6
2,375,960	-		DZA65_RS11215	0.61	+1.2
2,375,960	-		DZA65_RS11215	0.61	-0.5
2,375,960	-		DZA65_RS11215	0.61	-2.0
2,375,961	+		DZA65_RS11215	0.61	-0.3
2,375,973	+		DZA65_RS11215	0.62	-1.5
2,375,974	-		DZA65_RS11215	0.62	+0.8
2,376,057	+		DZA65_RS11215	0.66	-0.4
2,376,058	-		DZA65_RS11215	0.66	+0.4
2,376,126	+		DZA65_RS11215	0.70	-0.1
2,376,127	-		DZA65_RS11215	0.70	+0.6
2,376,127	-		DZA65_RS11215	0.70	-0.3
2,376,127	-		DZA65_RS11215	0.70	-1.0
2,376,206	+		DZA65_RS11215	0.74	-1.3
2,376,207	-		DZA65_RS11215	0.74	-0.5
2,376,303	+		DZA65_RS11215	0.80	+1.7
2,376,427	+		DZA65_RS11215	0.86	-1.2
2,376,428	-		DZA65_RS11215	0.86	+0.0
2,376,428	-		DZA65_RS11215	0.86	-2.0
2,376,430	+		DZA65_RS11215	0.86	-0.6
2,376,430	+		DZA65_RS11215	0.86	-2.0
2,376,430	+		DZA65_RS11215	0.86	+4.4
2,376,431	-		DZA65_RS11215	0.86	+0.6
2,376,439	-		DZA65_RS11215	0.87	-0.4
2,376,517	+				+1.3
2,376,517	+				-1.0
2,376,517	+				+1.1
2,376,517	+				-2.3
2,376,517	+				-0.1
2,376,517	+				-0.1
2,376,517	+				-2.9
2,376,517	+				+0.3
2,376,517	+				+0.5
2,376,517	+				-1.1
2,376,517	+				-0.1
2,376,517	+				-0.3
2,376,518	-				+1.6
2,376,518	-				-2.0
2,376,518	-				-1.9
2,376,518	-				+0.2
2,376,518	-				+0.7
2,376,518	-				+0.3
2,376,518	-				+0.3
2,376,518	-				-0.7
2,376,518	-				-0.2
2,376,518	-				+0.5
2,376,518	-				-0.7
2,376,518	-				+0.2
2,376,518	-				+0.2
2,376,518	-				+0.7
2,376,518	-				-1.7
2,376,518	-				-0.2
2,376,518	-				+0.3
2,376,518	-				-0.7
2,376,520	+				-0.5
2,376,520	+				-0.7
2,376,520	+				+0.4
2,376,520	+				+1.0
2,376,520	+				-1.3
2,376,521	-				+1.4
2,376,521	-				-0.2
2,376,521	-				+2.6
2,376,523	-				+1.3
2,376,583	+				-0.0
2,376,632	-				+0.6
2,376,683	-				-1.1
2,376,683	-				-2.3
2,376,704	+				+0.1
2,376,704	+				-1.9
2,376,704	+				-0.5
2,376,705	-				+1.4
2,376,822	+				+1.4
2,376,822	+				+0.5
2,376,822	+				-0.9
2,376,822	+				-0.5
2,376,823	-				+0.0
2,376,823	-				+0.5
2,376,823	-				+0.7
2,376,850	+				+3.1
2,376,850	+				-0.1
2,376,888	+				-1.0
2,376,915	+				-1.4
2,376,918	-				+0.7
2,376,918	-				+0.3
2,376,918	-				-0.2
2,376,932	-				+0.6
2,376,957	-				+1.3
2,376,985	+				-0.7
2,376,985	+				+0.2
2,376,985	+				-0.3
2,376,985	+				+0.7
2,376,986	-				+1.9
2,376,991	+				+0.9
2,376,991	+				-0.9
2,376,991	+				-0.8
2,376,992	-				-0.0
2,377,002	+				-0.7
2,377,002	+				-0.4
2,377,002	+				-0.2
2,377,002	+				+1.5
2,377,002	+				-0.3
2,377,002	+				+0.8
2,377,002	+				+0.3
2,377,003	-				+0.6
2,377,003	-				+0.0
2,377,003	-				-1.3
2,377,003	-				-0.0
2,377,072	+				+0.9
2,377,073	-				-0.8
2,377,205	-		DZA65_RS11220	0.14	-0.5
2,377,272	+		DZA65_RS11220	0.19	+0.0
2,377,272	+		DZA65_RS11220	0.19	+1.1
2,377,273	-		DZA65_RS11220	0.19	+1.3
2,377,302	+		DZA65_RS11220	0.21	-0.9
2,377,302	+		DZA65_RS11220	0.21	+0.0
2,377,302	+		DZA65_RS11220	0.21	-0.9
2,377,498	+		DZA65_RS11220	0.35	-0.5
2,377,508	-		DZA65_RS11220	0.35	+0.3
2,377,524	-		DZA65_RS11220	0.36	+0.6
2,377,524	-		DZA65_RS11220	0.36	+2.0
2,377,596	+		DZA65_RS11220	0.41	+0.2
2,377,597	-		DZA65_RS11220	0.42	-0.7
2,377,629	+		DZA65_RS11220	0.44	+2.9
2,377,629	+		DZA65_RS11220	0.44	-0.7
2,377,630	-		DZA65_RS11220	0.44	-1.7
2,377,630	-		DZA65_RS11220	0.44	+0.7
2,377,651	+		DZA65_RS11220	0.45	-0.7
2,377,668	+		DZA65_RS11220	0.47	-0.7
2,377,669	-		DZA65_RS11220	0.47	+0.3