Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10820

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,287,503	+		DZA65_RS10810	0.79	-3.4
2,287,503	+		DZA65_RS10810	0.79	-2.8
2,287,553	+		DZA65_RS10810	0.85	-1.3
2,287,553	+		DZA65_RS10810	0.85	-2.7
2,287,553	+		DZA65_RS10810	0.85	-1.7
2,287,554	-		DZA65_RS10810	0.85	-1.7
2,287,554	-		DZA65_RS10810	0.85	-2.0
2,287,554	-		DZA65_RS10810	0.85	-0.0
2,287,554	-		DZA65_RS10810	0.85	-1.9
2,287,589	+		DZA65_RS10810	0.90	-2.7
2,287,590	-		DZA65_RS10810	0.90	-2.9
2,287,702	+				-0.2
2,287,703	-				-0.7
2,287,703	-				-2.3
2,287,745	-				+0.6
2,287,745	-				-2.7
2,287,748	+				-0.3
2,287,748	+				-1.8
2,287,748	+				-2.0
2,287,748	+				-0.7
2,287,749	-				-0.4
2,287,749	-				+1.2
2,287,749	-				+0.4
2,287,754	+				-2.9
2,287,754	+				-3.5
2,287,754	+				-3.2
2,287,755	-				+1.0
2,287,757	+				-0.3
2,287,757	+				-1.4
2,287,758	-				+2.0
2,287,758	-				+1.5
2,287,758	-				+1.0
2,287,758	-				+0.9
2,287,758	-				-0.2
2,287,758	-				-0.4
2,287,758	-				+0.3
2,287,844	+		DZA65_RS10815	0.19	+0.5
2,287,844	+		DZA65_RS10815	0.19	-2.0
2,287,844	+		DZA65_RS10815	0.19	-1.9
2,287,844	+		DZA65_RS10815	0.19	-1.7
2,287,844	+		DZA65_RS10815	0.19	-2.4
2,287,844	+		DZA65_RS10815	0.19	-0.5
2,287,844	+		DZA65_RS10815	0.19	-2.5
2,287,844	+		DZA65_RS10815	0.19	-3.2
2,287,845	-		DZA65_RS10815	0.19	+1.1
2,287,845	-		DZA65_RS10815	0.19	-1.8
2,287,845	-		DZA65_RS10815	0.19	+0.9
2,287,845	-		DZA65_RS10815	0.19	+0.8
2,287,845	-		DZA65_RS10815	0.19	-1.3
2,287,845	-		DZA65_RS10815	0.19	+1.0
2,287,845	-		DZA65_RS10815	0.19	-1.4
2,287,845	-		DZA65_RS10815	0.19	-0.1
2,287,845	-		DZA65_RS10815	0.19	+0.6
2,287,845	-		DZA65_RS10815	0.19	-1.2
2,287,845	-		DZA65_RS10815	0.19	-0.3
2,287,845	-		DZA65_RS10815	0.19	+0.9
2,287,845	-		DZA65_RS10815	0.19	-0.4
2,287,845	-		DZA65_RS10815	0.19	-0.1
2,287,847	+		DZA65_RS10815	0.19	-1.5
2,287,847	+		DZA65_RS10815	0.19	-1.6
2,287,847	+		DZA65_RS10815	0.19	-2.3
2,287,847	+		DZA65_RS10815	0.19	+0.6
2,287,847	+		DZA65_RS10815	0.19	-0.5
2,287,848	-		DZA65_RS10815	0.20	+0.8
2,287,848	-		DZA65_RS10815	0.20	+1.0
2,287,946	+		DZA65_RS10815	0.41	+1.9
2,287,984	+		DZA65_RS10815	0.49	-1.7
2,287,985	-		DZA65_RS10815	0.49	-0.6
2,288,082	-		DZA65_RS10815	0.70	+0.3
2,288,102	+		DZA65_RS10815	0.74	-1.4
2,288,102	+		DZA65_RS10815	0.74	-0.3
2,288,102	+		DZA65_RS10815	0.74	+0.0
2,288,103	-		DZA65_RS10815	0.74	+0.7
2,288,103	-		DZA65_RS10815	0.74	+0.9
2,288,109	+		DZA65_RS10815	0.75	-1.1
2,288,109	+		DZA65_RS10815	0.75	-0.4
2,288,109	+		DZA65_RS10815	0.75	-0.7
2,288,110	-		DZA65_RS10815	0.76	+0.5
2,288,166	-		DZA65_RS10815	0.88	+0.4
2,288,186	+				+1.1
2,288,187	-				-0.7
2,288,226	+				-1.0
2,288,226	+				+0.3
2,288,226	+				-2.2
2,288,227	-				-0.5
2,288,227	-				-1.1
2,288,227	-				+0.6
2,288,248	+				+0.7
2,288,249	-				+0.4
2,288,249	-				+0.5
2,288,254	+				-0.9
2,288,254	+				-0.3
2,288,254	+				+1.6
2,288,258	+				-0.6
2,288,259	-				+0.8
2,288,288	+				-0.9
2,288,288	+				+2.1
2,288,288	+				+1.1
2,288,288	+				+1.0
2,288,288	+				-2.7
2,288,288	+				+0.3
2,288,293	+				+0.2
2,288,294	-				+2.3
2,288,319	+				-2.5
2,288,320	-				-0.1
2,288,336	+				+0.4
2,288,336	+				-0.4
2,288,336	+				-2.0
2,288,336	+				+0.8
2,288,336	+				+0.2
2,288,337	-				-0.4
2,288,340	+				-1.0
2,288,340	+				+0.2
2,288,340	+				+0.3
2,288,340	+				+0.7
2,288,340	+				-0.0
2,288,340	+				+0.4
2,288,340	+				-1.1
2,288,340	+				-1.3
2,288,340	+				-1.7
2,288,340	+				+1.5
2,288,340	+				+2.3
2,288,341	-				+0.7
2,288,341	-				+2.2
2,288,341	-				+0.9
2,288,341	-				-0.3
2,288,341	-				-0.7
2,288,341	-				-0.4
2,288,341	-				-0.8
2,288,341	-				+1.9
2,288,363	+				-0.6
2,288,363	+				-3.4
2,288,363	+				-0.3
2,288,363	+				+0.1
2,288,363	+				-0.6
2,288,363	+				-0.4
2,288,364	-				+0.1
2,288,364	-				-0.5
2,288,364	-				-1.7
2,288,393	+				-1.0
2,288,393	+				+0.6
2,288,393	+				+0.1
2,288,393	+				-2.7
2,288,394	-				-0.7
2,288,397	+				-0.7
2,288,397	+				-0.2
2,288,443	-				-0.6
2,288,531	-		DZA65_RS10820	0.16	-0.8
2,288,531	-		DZA65_RS10820	0.16	+0.5
2,288,631	-		DZA65_RS10820	0.27	+0.7
2,288,631	-		DZA65_RS10820	0.27	-2.5
2,288,660	+		DZA65_RS10820	0.31	-0.7
2,288,660	+		DZA65_RS10820	0.31	-0.1
2,288,660	+		DZA65_RS10820	0.31	+0.7
2,288,660	+		DZA65_RS10820	0.31	-0.5
2,288,661	-		DZA65_RS10820	0.31	-2.2
2,288,661	-		DZA65_RS10820	0.31	-0.5
2,288,661	-		DZA65_RS10820	0.31	+0.5
2,288,661	-		DZA65_RS10820	0.31	-0.0
2,288,661	-		DZA65_RS10820	0.31	-2.3
2,288,661	-		DZA65_RS10820	0.31	-2.3
2,288,661	-		DZA65_RS10820	0.31	+1.3
2,288,672	+		DZA65_RS10820	0.32	-1.4
2,288,672	+		DZA65_RS10820	0.32	-0.1
2,288,676	+		DZA65_RS10820	0.32	-0.2
2,288,676	+		DZA65_RS10820	0.32	-0.7
2,288,676	+		DZA65_RS10820	0.32	-1.7
2,288,676	+		DZA65_RS10820	0.32	+0.6
2,288,677	-		DZA65_RS10820	0.33	-0.3
2,288,677	-		DZA65_RS10820	0.33	-1.3
2,288,677	-		DZA65_RS10820	0.33	-0.6
2,288,685	+		DZA65_RS10820	0.33	-1.9
2,288,685	+		DZA65_RS10820	0.33	-0.9
2,288,685	+		DZA65_RS10820	0.33	-1.6
2,288,685	+		DZA65_RS10820	0.33	-0.4
2,288,685	+		DZA65_RS10820	0.33	-0.6
2,288,685	+		DZA65_RS10820	0.33	-0.0
2,288,686	-		DZA65_RS10820	0.34	+0.9
2,288,686	-		DZA65_RS10820	0.34	-0.2
2,288,707	+		DZA65_RS10820	0.36	+0.3
2,288,707	+		DZA65_RS10820	0.36	+0.1
2,288,708	-		DZA65_RS10820	0.36	+0.6
2,288,768	+		DZA65_RS10820	0.43	-1.8
2,288,768	+		DZA65_RS10820	0.43	+0.3
2,288,768	+		DZA65_RS10820	0.43	-0.1
2,288,768	+		DZA65_RS10820	0.43	-2.5
2,288,768	+		DZA65_RS10820	0.43	-0.9
2,288,768	+		DZA65_RS10820	0.43	-0.9
2,288,768	+		DZA65_RS10820	0.43	+0.8
2,288,769	-		DZA65_RS10820	0.43	-0.9
2,288,769	-		DZA65_RS10820	0.43	-0.1
2,288,769	-		DZA65_RS10820	0.43	-0.2
2,288,769	-				+0.3
2,288,769	-		DZA65_RS10820	0.43	-0.5
2,288,796	+				+2.1
2,288,797	-		DZA65_RS10820	0.46	-1.2
2,288,797	-		DZA65_RS10820	0.46	+0.3
2,288,859	+		DZA65_RS10820	0.53	+0.0
2,288,949	+		DZA65_RS10820	0.63	-0.7
2,288,950	-		DZA65_RS10820	0.63	-1.7
2,288,950	-		DZA65_RS10820	0.63	+0.1
2,289,066	+		DZA65_RS10820	0.76	-1.1
2,289,095	+		DZA65_RS10820	0.79	-0.3
2,289,095	+		DZA65_RS10820	0.79	-0.1
2,289,096	-		DZA65_RS10820	0.79	-0.4
2,289,101	+		DZA65_RS10820	0.80	-1.3
2,289,101	+		DZA65_RS10820	0.80	-1.3
2,289,101	+		DZA65_RS10820	0.80	-0.5
2,289,129	+		DZA65_RS10820	0.83	-0.4
2,289,152	+		DZA65_RS10820	0.85	+0.2
2,289,152	+		DZA65_RS10820	0.85	+0.3
2,289,152	+		DZA65_RS10820	0.85	+0.1
2,289,152	+		DZA65_RS10820	0.85	-3.5
2,289,152	+		DZA65_RS10820	0.85	+0.5
2,289,152	+		DZA65_RS10820	0.85	-1.3
2,289,153	-		DZA65_RS10820	0.85	+0.1
2,289,166	+		DZA65_RS10820	0.87	-1.5
2,289,166	+		DZA65_RS10820	0.87	+0.3
2,289,167	-		DZA65_RS10820	0.87	-0.1
2,289,213	+				-1.0
2,289,289	+				-1.8
2,289,289	+				-1.7
2,289,289	+				-1.9
2,289,289	+				-1.0
2,289,289	+				-2.2
2,289,289	+				+0.4
2,289,289	+				+0.1
2,289,289	+				-0.9
2,289,376	+				-0.7
2,289,376	+				+0.3
2,289,377	-				+0.8
2,289,421	-				+0.6
2,289,421	-				-0.7
2,289,445	+				+0.7
2,289,446	-				+1.5
2,289,446	-				-0.9
2,289,521	+		DZA65_RS10825	0.17	-0.0
2,289,521	+		DZA65_RS10825	0.17	+0.3
2,289,521	+		DZA65_RS10825	0.17	+0.3
2,289,522	-		DZA65_RS10825	0.17	-0.5
2,289,524	+		DZA65_RS10825	0.18	+0.6
2,289,575	+		DZA65_RS10825	0.23	-0.4
2,289,576	-		DZA65_RS10825	0.23	-1.7
2,289,634	+		DZA65_RS10825	0.28	-0.9
2,289,671	+		DZA65_RS10825	0.32	-1.3
2,289,682	-		DZA65_RS10825	0.33	-0.2
2,289,682	-		DZA65_RS10825	0.33	+0.3
2,289,715	+		DZA65_RS10825	0.36	-0.5
2,289,715	+		DZA65_RS10825	0.36	-1.7
2,289,715	+		DZA65_RS10825	0.36	+0.3
2,289,715	+		DZA65_RS10825	0.36	-0.8
2,289,715	+		DZA65_RS10825	0.36	+0.5
2,289,715	+		DZA65_RS10825	0.36	-0.0
2,289,716	-		DZA65_RS10825	0.36	-0.5
2,289,716	-		DZA65_RS10825	0.36	+0.9
2,289,716	-		DZA65_RS10825	0.36	-0.5
2,289,716	-		DZA65_RS10825	0.36	-1.4
2,289,716	-		DZA65_RS10825	0.36	+0.3
2,289,716	-		DZA65_RS10825	0.36	-1.4
2,289,717	+		DZA65_RS10825	0.37	-0.0
2,289,811	+		DZA65_RS10825	0.46	+0.3
2,289,811	+		DZA65_RS10825	0.46	+0.6
2,289,812	-		DZA65_RS10825	0.46	+0.3
2,289,877	+		DZA65_RS10825	0.52	-1.0
2,289,877	+		DZA65_RS10825	0.52	-1.7
2,289,877	+		DZA65_RS10825	0.52	+0.4
2,289,878	-		DZA65_RS10825	0.52	+0.0
2,289,945	+		DZA65_RS10825	0.59	-1.2
2,289,975	-		DZA65_RS10825	0.62	+0.3
2,290,099	+		DZA65_RS10825	0.74	-0.9
2,290,118	-		DZA65_RS10825	0.76	+1.9
2,290,118	-		DZA65_RS10825	0.76	-0.1
2,290,149	+		DZA65_RS10825	0.79	-0.7
2,290,149	+		DZA65_RS10825	0.79	-0.5
2,290,235	+		DZA65_RS10825	0.88	-0.1
2,290,269	+				+0.0
2,290,269	+				-0.5
2,290,269	+				-0.6
2,290,270	-				+1.7
2,290,270	-				+0.3
2,290,274	+				+0.2