Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09980

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,109,991	+		DZA65_RS09975	0.59	-2.8
2,109,992	-		DZA65_RS09975	0.59	+0.7
2,110,074	+		DZA65_RS09975	0.62	-0.3
2,110,074	+		DZA65_RS09975	0.62	-1.5
2,110,074	+		DZA65_RS09975	0.62	+0.8
2,110,074	+		DZA65_RS09975	0.62	-0.8
2,110,074	+		DZA65_RS09975	0.62	-1.3
2,110,074	+		DZA65_RS09975	0.62	-0.4
2,110,075	-		DZA65_RS09975	0.62	-0.3
2,110,075	-		DZA65_RS09975	0.62	-1.8
2,110,075	-		DZA65_RS09975	0.62	+0.8
2,110,075	-		DZA65_RS09975	0.62	-0.1
2,110,075	-		DZA65_RS09975	0.62	+0.0
2,110,133	-				+0.3
2,110,155	+		DZA65_RS09975	0.66	-1.0
2,110,156	-		DZA65_RS09975	0.66	+0.5
2,110,202	-		DZA65_RS09975	0.68	-1.0
2,110,213	-		DZA65_RS09975	0.68	+0.4
2,110,213	-		DZA65_RS09975	0.68	-0.9
2,110,213	-		DZA65_RS09975	0.68	-0.9
2,110,213	-		DZA65_RS09975	0.68	-1.6
2,110,282	+		DZA65_RS09975	0.71	-1.2
2,110,283	-		DZA65_RS09975	0.71	-2.1
2,110,283	-		DZA65_RS09975	0.71	-1.0
2,110,283	-		DZA65_RS09975	0.71	+0.6
2,110,283	-		DZA65_RS09975	0.71	+0.3
2,110,371	+		DZA65_RS09975	0.75	+0.0
2,110,371	+		DZA65_RS09975	0.75	+0.3
2,110,372	-		DZA65_RS09975	0.75	+1.7
2,110,379	+		DZA65_RS09975	0.76	-0.6
2,110,451	-		DZA65_RS09975	0.79	-0.1
2,110,465	+		DZA65_RS09975	0.79	-1.1
2,110,466	-		DZA65_RS09975	0.80	-1.0
2,110,476	+		DZA65_RS09975	0.80	-0.9
2,110,477	-		DZA65_RS09975	0.80	-0.6
2,110,558	-		DZA65_RS09975	0.84	-1.3
2,110,558	-		DZA65_RS09975	0.84	-0.9
2,110,578	-		DZA65_RS09975	0.84	+0.7
2,110,578	-		DZA65_RS09975	0.84	+0.5
2,110,668	+		DZA65_RS09975	0.88	-2.3
2,110,668	+		DZA65_RS09975	0.88	-1.4
2,110,833	+				+0.6
2,110,933	+				+0.3
2,110,933	+				-0.7
2,110,933	+				-0.1
2,110,934	-				+0.5
2,110,936	+				-0.3
2,110,936	+				+0.4
2,110,936	+				-0.4
2,110,936	+				-0.9
2,110,936	+				-0.9
2,110,936	+				-0.3
2,110,936	+				-1.1
2,110,936	+				-0.3
2,110,937	-				-0.7
2,110,937	-				-2.2
2,110,937	-				-0.0
2,110,937	-				-0.8
2,110,937	-				-0.3
2,110,937	-				+0.3
2,110,937	-				-0.5
2,110,942	+				-2.5
2,110,942	+				+0.1
2,110,942	+				-0.7
2,110,943	-				-1.8
2,110,943	-				+1.8
2,110,943	-				+0.2
2,110,953	+				-0.7
2,110,962	-				-1.3
2,110,991	+				-0.5
2,110,991	+				-0.4
2,110,992	-				+1.3
2,111,015	+				-0.3
2,111,015	+				-0.3
2,111,015	+				-0.6
2,111,015	+				-0.9
2,111,015	+				-0.4
2,111,016	-				-1.5
2,111,016	-				-0.7
2,111,016	-				-1.7
2,111,016	-				+0.3
2,111,019	+				-0.3
2,111,020	-				+1.1
2,111,020	-				+0.2
2,111,020	-				+0.7
2,111,027	+				-0.8
2,111,028	-				+0.0
2,111,028	-				+0.3
2,111,028	-				-0.9
2,111,113	+		DZA65_RS09980	0.14	+0.1
2,111,113	+		DZA65_RS09980	0.14	-0.7
2,111,113	+		DZA65_RS09980	0.14	+2.6
2,111,114	-		DZA65_RS09980	0.14	+0.3
2,111,114	-		DZA65_RS09980	0.14	-0.2
2,111,114	-		DZA65_RS09980	0.14	-0.6
2,111,114	-		DZA65_RS09980	0.14	+0.4
2,111,114	-		DZA65_RS09980	0.14	-0.7
2,111,142	+		DZA65_RS09980	0.18	-0.5
2,111,143	-		DZA65_RS09980	0.18	+1.8
2,111,143	-		DZA65_RS09980	0.18	-0.7
2,111,178	+		DZA65_RS09980	0.22	-0.3
2,111,289	+		DZA65_RS09980	0.35	-1.4
2,111,300	+		DZA65_RS09980	0.36	-1.0
2,111,300	+		DZA65_RS09980	0.36	+0.3
2,111,301	-		DZA65_RS09980	0.36	-0.3
2,111,301	-		DZA65_RS09980	0.36	+0.8
2,111,301	-		DZA65_RS09980	0.36	+0.0
2,111,301	-		DZA65_RS09980	0.36	+2.8
2,111,301	-		DZA65_RS09980	0.36	-0.3
2,111,401	+		DZA65_RS09980	0.48	+0.1
2,111,401	+		DZA65_RS09980	0.48	+0.5
2,111,401	+		DZA65_RS09980	0.48	+0.1
2,111,401	+		DZA65_RS09980	0.48	+1.3
2,111,401	+		DZA65_RS09980	0.48	-0.2
2,111,401	+		DZA65_RS09980	0.48	-0.4
2,111,402	-		DZA65_RS09980	0.48	-0.7
2,111,402	-		DZA65_RS09980	0.48	+0.1
2,111,402	-		DZA65_RS09980	0.48	+0.1
2,111,402	-		DZA65_RS09980	0.48	-0.9
2,111,402	-		DZA65_RS09980	0.48	+1.6
2,111,495	+		DZA65_RS09980	0.59	+0.7
2,111,495	+		DZA65_RS09980	0.59	+0.7
2,111,495	+		DZA65_RS09980	0.59	-1.3
2,111,495	+		DZA65_RS09980	0.59	-0.9
2,111,496	-		DZA65_RS09980	0.59	+0.3
2,111,496	-		DZA65_RS09980	0.59	+0.3
2,111,577	+		DZA65_RS09980	0.68	-0.8
2,111,577	+		DZA65_RS09980	0.68	+0.9
2,111,577	+		DZA65_RS09980	0.68	-0.7
2,111,578	-		DZA65_RS09980	0.69	-0.1
2,111,578	-		DZA65_RS09980	0.69	-0.9
2,111,639	-		DZA65_RS09980	0.76	-0.4
2,111,652	+		DZA65_RS09980	0.77	-1.1
2,111,653	-		DZA65_RS09980	0.77	-0.9
2,111,653	-		DZA65_RS09980	0.77	+0.0
2,111,657	+				+1.5
2,111,691	+		DZA65_RS09980	0.82	-0.0
2,111,694	-		DZA65_RS09980	0.82	-2.5
2,111,751	+		DZA65_RS09980	0.89	-0.6
2,111,774	+				+1.6
2,111,774	+				+3.1
2,111,775	-				+0.9
2,111,818	+				-0.7
2,111,818	+				-1.7
2,111,869	-				+1.5
2,111,872	+				+0.3
2,111,886	-				+0.5
2,111,936	-				-1.7
2,112,092	+				-1.1
2,112,103	+				-0.2
2,112,103	+				+0.7
2,112,112	+				-3.1
2,112,141	-				-0.1
2,112,141	-				-0.2
2,112,149	+				-0.1
2,112,150	-				+0.3
2,112,157	+				-2.5
2,112,157	+				-0.4
2,112,161	+				+0.5
2,112,179	+				-0.3
2,112,180	-				-0.4
2,112,182	-				+0.6
2,112,182	-				+0.1
2,112,190	-				-1.3
2,112,204	+				+0.9
2,112,204	+				+0.7
2,112,205	-				-0.7
2,112,211	-				+2.3
2,112,212	+				-0.1
2,112,238	-				-1.0
2,112,242	+				-0.0
2,112,242	+				+0.3
2,112,278	-				-1.7
2,112,284	+				-0.7
2,112,284	+				-0.3
2,112,284	+				-0.3
2,112,284	+				+0.6
2,112,284	+				+0.8
2,112,284	+				+0.0
2,112,284	+				+0.3
2,112,285	-				+0.2
2,112,285	-				+0.5
2,112,286	+				-1.3
2,112,286	+				+0.1
2,112,287	-				+1.9
2,112,287	-				-1.7
2,112,287	-				+0.7
2,112,287	-				-0.3
2,112,288	+				-0.8
2,112,288	+				-1.0
2,112,289	-				-0.4
2,112,289	-				-1.3
2,112,353	+				-0.7
2,112,353	+				+0.0
2,112,353	+				-0.6
2,112,354	-				-0.8
2,112,368	-				-0.9
2,112,372	+				+0.3
2,112,373	-				+0.3
2,112,413	-				+1.7
2,112,478	+				+1.0
2,112,479	-				-0.1
2,112,535	+				-0.6
2,112,535	+				-0.5
2,112,535	+				-0.9
2,112,536	-				-2.8
2,112,536	-				-0.7
2,112,536	-				-0.4
2,112,556	+		DZA65_RS09985	0.11	-0.2
2,112,556	+		DZA65_RS09985	0.11	+0.3
2,112,556	+		DZA65_RS09985	0.11	+0.1
2,112,556	+		DZA65_RS09985	0.11	-2.0
2,112,556	+		DZA65_RS09985	0.11	-2.7
2,112,556	+		DZA65_RS09985	0.11	-1.5
2,112,556	+		DZA65_RS09985	0.11	+0.6
2,112,557	-		DZA65_RS09985	0.11	+0.9
2,112,557	-		DZA65_RS09985	0.11	-2.8
2,112,557	-		DZA65_RS09985	0.11	+0.6
2,112,557	-		DZA65_RS09985	0.11	-0.7
2,112,559	+		DZA65_RS09985	0.11	-0.7
2,112,560	-		DZA65_RS09985	0.11	+1.3
2,112,560	-		DZA65_RS09985	0.11	+0.3
2,112,620	-		DZA65_RS09985	0.14	-0.8
2,112,622	+				-2.0
2,112,622	+		DZA65_RS09985	0.15	+0.3
2,112,622	+		DZA65_RS09985	0.15	+0.7
2,112,622	+		DZA65_RS09985	0.15	-1.4
2,112,622	+		DZA65_RS09985	0.15	+0.3