Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09640

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,028,220	+		DZA65_RS09635	0.77	+1.0
2,028,220	+		DZA65_RS09635	0.77	+0.9
2,028,220	+		DZA65_RS09635	0.77	-1.5
2,028,221	-		DZA65_RS09635	0.77	+0.0
2,028,221	-		DZA65_RS09635	0.77	+0.3
2,028,221	-		DZA65_RS09635	0.77	-0.5
2,028,221	-		DZA65_RS09635	0.77	+2.8
2,028,255	+		DZA65_RS09635	0.79	-1.7
2,028,255	+		DZA65_RS09635	0.79	+0.1
2,028,256	-		DZA65_RS09635	0.79	-0.7
2,028,318	+		DZA65_RS09635	0.83	+0.0
2,028,352	+		DZA65_RS09635	0.86	+0.8
2,028,378	+		DZA65_RS09635	0.87	-0.7
2,028,398	+		DZA65_RS09635	0.89	-1.7
2,028,399	-		DZA65_RS09635	0.89	+0.6
2,028,399	-		DZA65_RS09635	0.89	+0.2
2,028,422	-				-0.6
2,028,465	+				-1.2
2,028,465	+				-0.5
2,028,465	+				-1.5
2,028,466	-				+3.7
2,028,562	+				+0.3
2,028,570	+				-0.1
2,028,591	+				-0.2
2,028,592	-				-1.1
2,028,635	+				-0.2
2,028,636	-				+1.0
2,028,697	+				-0.4
2,028,698	-				-1.7
2,028,702	+				-0.3
2,028,718	+				+1.3
2,028,718	+				-0.5
2,028,719	-				-1.4
2,028,719	-				-0.2
2,028,740	+				+2.3
2,028,740	+				+0.1
2,028,740	+				-0.7
2,028,741	-				-0.7
2,028,744	+				-0.2
2,028,744	+				-0.7
2,028,744	+				-2.7
2,028,745	-				-0.1
2,028,745	-				-0.5
2,028,745	-				-0.2
2,028,745	-				+0.1
2,028,745	-				+1.2
2,028,745	-				-0.1
2,028,798	-				-1.8
2,028,802	+				-0.0
2,028,802	+				+0.1
2,028,802	+				-0.4
2,028,802	+				-1.5
2,028,802	+				+0.3
2,028,802	+				-0.8
2,028,802	+				-0.6
2,028,802	+				+1.3
2,028,802	+				+1.5
2,028,802	+				-2.2
2,028,803	-				-0.4
2,028,803	-				+0.3
2,028,803	-				-2.2
2,028,803	-				-0.3
2,028,803	-				+0.8
2,028,803	-				+1.1
2,028,803	-				+0.0
2,028,803	-				+1.2
2,028,803	-				-2.0
2,028,803	-				-0.3
2,028,804	+				-2.2
2,028,804	+				-0.6
2,028,804	+				+0.8
2,028,805	-				-0.3
2,028,805	-				-0.8
2,028,805	-				-0.8
2,028,805	-				-0.2
2,028,805	-				+0.9
2,028,805	-				-1.2
2,028,805	-				-1.4
2,028,806	+				-1.8
2,028,807	-				+0.5
2,028,807	-				-1.2
2,028,807	-				+0.6
2,028,811	+				-0.9
2,028,816	-				+1.0
2,028,816	-				-0.2
2,028,830	+				+0.8
2,028,831	-				-0.9
2,028,831	-				-0.1
2,028,918	+				-0.9
2,028,918	+				+0.6
2,028,919	-				-1.5
2,028,929	+				-0.8
2,028,929	+				-0.3
2,028,930	-				-0.5
2,028,963	+				+0.2
2,028,963	+				+1.5
2,028,963	+				+0.2
2,028,964	-				+0.7
2,028,964	-				+0.3
2,028,964	-				+0.3
2,029,042	+				-2.2
2,029,076	+		DZA65_RS09640	0.11	+0.3
2,029,354	+		DZA65_RS09640	0.36	-1.0
2,029,355	-				+0.8
2,029,355	-		DZA65_RS09640	0.36	-1.1
2,029,428	+		DZA65_RS09640	0.43	+0.1
2,029,428	+		DZA65_RS09640	0.43	+1.7
2,029,428	+		DZA65_RS09640	0.43	-0.1
2,029,429	-		DZA65_RS09640	0.43	-0.0
2,029,453	+		DZA65_RS09640	0.45	-3.0
2,029,454	-		DZA65_RS09640	0.46	+1.8
2,029,454	-		DZA65_RS09640	0.46	-0.7
2,029,454	-		DZA65_RS09640	0.46	+0.3
2,029,454	-				-0.2
2,029,492	+		DZA65_RS09640	0.49	-1.7
2,029,492	+		DZA65_RS09640	0.49	-0.1
2,029,493	-		DZA65_RS09640	0.49	-0.4
2,029,508	+		DZA65_RS09640	0.51	+1.4
2,029,509	-		DZA65_RS09640	0.51	-1.2
2,029,734	-		DZA65_RS09640	0.71	+0.2
2,029,795	+		DZA65_RS09640	0.77	-0.2
2,029,808	+		DZA65_RS09640	0.78	+0.5
2,029,809	-		DZA65_RS09640	0.78	-0.4
2,029,809	-		DZA65_RS09640	0.78	-0.2
2,029,809	-		DZA65_RS09640	0.78	-2.0
2,029,908	+		DZA65_RS09640	0.87	-0.4
2,029,909	-		DZA65_RS09640	0.87	-0.7
2,029,909	-		DZA65_RS09640	0.87	+0.8
2,029,975	+				+0.4
2,029,976	-				+0.1
2,029,976	-				-0.7
2,030,001	+				-0.0
2,030,001	+				-0.1
2,030,001	+				+2.3
2,030,002	-				+0.6
2,030,002	-				-0.4
2,030,002	-				-2.1
2,030,047	+				+0.8
2,030,048	-				-0.5
2,030,063	+				-0.1
2,030,064	-				-1.2
2,030,079	+				+0.7
2,030,080	-				+0.0
2,030,080	-				+0.5
2,030,144	-				-0.2
2,030,144	-				+1.2
2,030,164	+		DZA65_RS09645	0.17	-0.8
2,030,164	+		DZA65_RS09645	0.17	-1.5
2,030,164	+		DZA65_RS09645	0.17	-2.8
2,030,164	+		DZA65_RS09645	0.17	+0.9
2,030,164	+		DZA65_RS09645	0.17	+0.6
2,030,164	+		DZA65_RS09645	0.17	+0.9
2,030,164	+		DZA65_RS09645	0.17	+0.5
2,030,164	+		DZA65_RS09645	0.17	-0.7
2,030,165	-		DZA65_RS09645	0.18	-0.0
2,030,165	-		DZA65_RS09645	0.18	+0.6
2,030,165	-		DZA65_RS09645	0.18	-1.2
2,030,165	-		DZA65_RS09645	0.18	+0.3
2,030,173	+		DZA65_RS09645	0.22	+0.3
2,030,173	+		DZA65_RS09645	0.22	-0.0
2,030,174	-		DZA65_RS09645	0.22	-1.0
2,030,174	-		DZA65_RS09645	0.22	-1.0
2,030,176	+		DZA65_RS09645	0.23	-2.4
2,030,227	-		DZA65_RS09645	0.47	-2.1
2,030,236	+		DZA65_RS09645	0.51	-1.2
2,030,242	+		DZA65_RS09645	0.54	+0.3
2,030,242	+		DZA65_RS09645	0.54	+1.3
2,030,259	+		DZA65_RS09645	0.62	-0.1
2,030,260	-		DZA65_RS09645	0.62	-0.1
2,030,265	+		DZA65_RS09645	0.65	+0.7
2,030,265	+		DZA65_RS09645	0.65	+0.4
2,030,266	-		DZA65_RS09645	0.65	+0.3
2,030,271	+		DZA65_RS09645	0.68	+1.0
2,030,271	+		DZA65_RS09645	0.68	+0.5
2,030,271	+		DZA65_RS09645	0.68	-0.0
2,030,271	+		DZA65_RS09645	0.68	+0.5
2,030,272	-		DZA65_RS09645	0.68	-0.8
2,030,272	-		DZA65_RS09645	0.68	+0.2
2,030,272	-		DZA65_RS09645	0.68	-1.5
2,030,272	-		DZA65_RS09645	0.68	-2.0
2,030,274	+		DZA65_RS09645	0.69	-1.7
2,030,275	-		DZA65_RS09645	0.69	-0.6
2,030,275	-		DZA65_RS09645	0.69	-1.5
2,030,275	-		DZA65_RS09645	0.69	-2.2
2,030,275	-		DZA65_RS09645	0.69	-1.7
2,030,294	-		DZA65_RS09645	0.78	-0.2
2,030,298	+		DZA65_RS09645	0.80	-0.5
2,030,298	+				-0.2
2,030,298	+		DZA65_RS09645	0.80	-0.5
2,030,307	+		DZA65_RS09645	0.85	+1.2
2,030,307	+		DZA65_RS09645	0.85	-2.8
2,030,307	+		DZA65_RS09645	0.85	+2.0
2,030,308	-		DZA65_RS09645	0.85	-1.0
2,030,308	-		DZA65_RS09645	0.85	-2.2
2,030,308	-		DZA65_RS09645	0.85	-0.8
2,030,308	-		DZA65_RS09645	0.85	-0.2
2,030,322	+				+0.1
2,030,322	+				-0.5
2,030,323	-				-0.2
2,030,323	-				-2.5
2,030,323	-				+0.1
2,030,323	-				-0.1
2,030,371	+				+0.9
2,030,371	+				+0.3
2,030,372	-				-1.0
2,030,372	-				-1.8
2,030,440	+				+1.2
2,030,469	+				-0.4
2,030,526	-				+0.7
2,030,586	+				-0.2
2,030,586	+				-1.2
2,030,587	-				+0.2
2,030,587	-				-1.2
2,030,643	+				+0.6
2,030,651	+				+1.1
2,030,651	+				+1.4
2,030,652	-				-0.1
2,030,654	+				-0.9
2,030,655	-				+1.7
2,030,732	-				-3.4
2,030,732	-				-0.5
2,030,732	-				+1.2
2,030,732	-				-0.7
2,030,732	-				+0.7
2,030,732	-				+2.0
2,030,734	+				-0.1
2,030,734	+				+0.4
2,030,734	+				-2.7
2,030,735	-				-0.1
2,030,735	-				-0.9
2,030,735	-				+0.3
2,030,746	+				-1.0
2,030,941	+		DZA65_RS09650	0.32	+0.8
2,030,942	-		DZA65_RS09650	0.33	+0.1