Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09420

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,980,695	-				+1.8
1,980,719	-				-0.0
1,980,719	-				-0.2
1,980,735	+				+0.2
1,980,767	+				+0.7
1,980,767	+				-1.6
1,980,767	+				-0.6
1,980,767	+				+2.3
1,980,768	-				-0.2
1,980,768	-				-0.9
1,980,799	-				-1.5
1,980,811	+				+1.2
1,980,811	+				+2.0
1,980,811	+				-0.9
1,980,812	-				+0.6
1,980,813	+				-0.8
1,980,858	+				-2.8
1,980,858	+				+0.4
1,980,859	-				-1.8
1,980,860	+				+0.4
1,980,860	+				+0.9
1,980,860	+				-0.9
1,980,861	-				-0.1
1,980,898	+				+0.0
1,980,957	-				-1.0
1,980,957	-				+0.6
1,980,957	-				+1.0
1,980,957	-				-0.5
1,981,064	+				+0.2
1,981,064	+				-0.6
1,981,064	+				+2.4
1,981,065	-				-0.2
1,981,065	-				-1.7
1,981,065	-				-0.2
1,981,066	+				-0.1
1,981,066	+				-0.1
1,981,066	+				+1.5
1,981,066	+				+1.1
1,981,066	+				-0.1
1,981,066	+				-0.1
1,981,066	+				+0.6
1,981,066	+				+1.2
1,981,066	+				-0.7
1,981,066	+				-0.4
1,981,067	-				+0.4
1,981,067	-				-1.4
1,981,067	-				-1.6
1,981,067	-				+0.4
1,981,067	-				+1.5
1,981,067	-				-1.7
1,981,067	-				+0.2
1,981,067	-				-0.4
1,981,390	+				+0.1
1,981,391	-				-0.6
1,981,431	+				+2.1
1,981,431	+				+0.6
1,981,432	-				+0.6
1,981,432	-				-1.6
1,981,432	-				-0.2
1,981,432	-				-1.1
1,981,437	+				-0.9
1,981,437	+				-0.5
1,981,438	-				-2.4
1,981,438	-				+1.1
1,981,545	+				+0.8
1,981,546	-				-1.0
1,981,546	-				+0.3
1,981,610	-				+1.0
1,981,610	-				-0.5
1,981,644	-		DZA65_RS09420	0.11	+1.6
1,981,729	+		DZA65_RS09420	0.14	-0.6
1,981,729	+		DZA65_RS09420	0.14	-1.2
1,981,729	+		DZA65_RS09420	0.14	+1.4
1,981,739	+		DZA65_RS09420	0.15	-0.4
1,981,739	+		DZA65_RS09420	0.15	-0.9
1,981,739	+		DZA65_RS09420	0.15	+0.1
1,981,739	+		DZA65_RS09420	0.15	-0.2
1,981,739	+		DZA65_RS09420	0.15	+1.5
1,981,739	+		DZA65_RS09420	0.15	-0.6
1,981,739	+		DZA65_RS09420	0.15	+1.5
1,981,740	-		DZA65_RS09420	0.15	+1.0
1,981,740	-		DZA65_RS09420	0.15	-0.6
1,981,740	-		DZA65_RS09420	0.15	+1.8
1,981,740	-		DZA65_RS09420	0.15	-0.3
1,981,740	-		DZA65_RS09420	0.15	+1.0
1,981,740	-		DZA65_RS09420	0.15	+0.1
1,981,740	-		DZA65_RS09420	0.15	-1.9
1,981,740	-		DZA65_RS09420	0.15	+1.7
1,981,740	-		DZA65_RS09420	0.15	-0.4
1,981,740	-		DZA65_RS09420	0.15	+0.2
1,981,740	-		DZA65_RS09420	0.15	-0.6
1,981,740	-		DZA65_RS09420	0.15	-1.3
1,981,746	+		DZA65_RS09420	0.15	+0.6
1,981,746	+		DZA65_RS09420	0.15	+0.2
1,981,746	+		DZA65_RS09420	0.15	-0.6
1,981,746	+		DZA65_RS09420	0.15	+1.4
1,981,747	-		DZA65_RS09420	0.15	-1.2
1,981,747	-		DZA65_RS09420	0.15	-0.6
1,981,788	+		DZA65_RS09420	0.17	+0.6
1,981,788	+		DZA65_RS09420	0.17	+0.4
1,981,788	+		DZA65_RS09420	0.17	-0.6
1,981,804	+		DZA65_RS09420	0.17	-0.4
1,981,807	+		DZA65_RS09420	0.17	+1.4
1,981,807	+		DZA65_RS09420	0.17	+4.8
1,981,808	-		DZA65_RS09420	0.17	+0.4
1,981,808	-		DZA65_RS09420	0.17	+0.7
1,981,808	-		DZA65_RS09420	0.17	-0.3
1,981,808	-		DZA65_RS09420	0.17	+0.2
1,981,808	-		DZA65_RS09420	0.17	-0.4
1,981,822	+		DZA65_RS09420	0.18	-0.6
1,981,973	+		DZA65_RS09420	0.24	-0.0
1,981,974	-		DZA65_RS09420	0.24	-2.0
1,982,027	+		DZA65_RS09420	0.26	-1.3
1,982,077	+		DZA65_RS09420	0.28	-1.6
1,982,077	+		DZA65_RS09420	0.28	+0.1
1,982,078	-		DZA65_RS09420	0.28	-0.1
1,982,078	-		DZA65_RS09420	0.28	+0.4
1,982,078	-		DZA65_RS09420	0.28	+1.1
1,982,116	-		DZA65_RS09420	0.29	-1.0
1,982,116	-		DZA65_RS09420	0.29	+0.9
1,982,117	+		DZA65_RS09420	0.29	-0.6
1,982,117	+		DZA65_RS09420	0.29	-1.5
1,982,117	+		DZA65_RS09420	0.29	+0.4
1,982,117	+		DZA65_RS09420	0.29	+0.1
1,982,117	+		DZA65_RS09420	0.29	-0.2
1,982,117	+		DZA65_RS09420	0.29	+2.2
1,982,118	-		DZA65_RS09420	0.29	+0.7
1,982,118	-		DZA65_RS09420	0.29	+2.3
1,982,118	-		DZA65_RS09420	0.29	+1.4
1,982,118	-		DZA65_RS09420	0.29	+1.1
1,982,118	-		DZA65_RS09420	0.29	+1.0
1,982,118	-		DZA65_RS09420	0.29	+0.6
1,982,349	+		DZA65_RS09420	0.38	-0.1
1,982,349	+		DZA65_RS09420	0.38	-0.4
1,982,350	-		DZA65_RS09420	0.38	+0.2
1,982,350	-		DZA65_RS09420	0.38	-0.9
1,982,355	-		DZA65_RS09420	0.39	-0.5
1,982,363	+		DZA65_RS09420	0.39	-0.4
1,982,374	+		DZA65_RS09420	0.39	-0.6
1,982,375	-		DZA65_RS09420	0.39	-1.4
1,982,570	+		DZA65_RS09420	0.47	-0.4
1,982,571	-		DZA65_RS09420	0.47	-0.5
1,982,571	-		DZA65_RS09420	0.47	-0.3
1,982,571	-		DZA65_RS09420	0.47	-0.6
1,982,573	+				-0.6
1,982,573	+		DZA65_RS09420	0.47	-2.3
1,982,573	+		DZA65_RS09420	0.47	-0.2
1,982,573	+		DZA65_RS09420	0.47	+0.0
1,982,573	+		DZA65_RS09420	0.47	-0.4
1,982,573	+		DZA65_RS09420	0.47	+1.4
1,982,573	+		DZA65_RS09420	0.47	-1.6
1,982,574	-		DZA65_RS09420	0.47	-0.4
1,982,574	-		DZA65_RS09420	0.47	+0.8
1,982,574	-		DZA65_RS09420	0.47	+0.6
1,982,574	-		DZA65_RS09420	0.47	+0.7
1,982,574	-		DZA65_RS09420	0.47	+1.0
1,982,574	-		DZA65_RS09420	0.47	+3.7
1,982,574	-		DZA65_RS09420	0.47	-0.6
1,982,574	-		DZA65_RS09420	0.47	-0.7
1,982,575	+		DZA65_RS09420	0.47	-0.5
1,982,576	-		DZA65_RS09420	0.47	+1.6
1,982,576	-		DZA65_RS09420	0.47	+0.4
1,982,576	-		DZA65_RS09420	0.47	-2.0
1,982,627	+		DZA65_RS09420	0.49	-1.6
1,982,633	+		DZA65_RS09420	0.49	+0.2
1,982,784	+		DZA65_RS09420	0.55	+2.4
1,982,785	-		DZA65_RS09420	0.55	-0.0
1,982,785	-		DZA65_RS09420	0.55	-0.7
1,982,814	-		DZA65_RS09420	0.56	+0.8
1,982,871	+		DZA65_RS09420	0.59	-0.1
1,982,871	+		DZA65_RS09420	0.59	-1.6
1,982,882	-		DZA65_RS09420	0.59	-0.9
1,982,882	-		DZA65_RS09420	0.59	-0.5
1,982,918	+		DZA65_RS09420	0.60	-0.8
1,982,918	+		DZA65_RS09420	0.60	-0.2
1,982,919	-		DZA65_RS09420	0.60	+0.2
1,982,919	-		DZA65_RS09420	0.60	-2.4
1,982,919	-		DZA65_RS09420	0.60	-1.6
1,982,919	-		DZA65_RS09420	0.60	+1.0
1,982,919	-		DZA65_RS09420	0.60	+1.0
1,982,921	+				-0.2
1,982,921	+		DZA65_RS09420	0.60	+0.6
1,982,986	-		DZA65_RS09420	0.63	-2.4
1,982,993	-		DZA65_RS09420	0.63	+1.7
1,983,027	+		DZA65_RS09420	0.65	-0.1
1,983,027	+		DZA65_RS09420	0.65	-0.0
1,983,027	+		DZA65_RS09420	0.65	+0.8
1,983,027	+		DZA65_RS09420	0.65	-0.6
1,983,028	-		DZA65_RS09420	0.65	-2.4
1,983,028	-		DZA65_RS09420	0.65	-0.0
1,983,070	+		DZA65_RS09420	0.66	-1.6
1,983,071	-		DZA65_RS09420	0.66	+0.8
1,983,071	-		DZA65_RS09420	0.66	-2.2
1,983,071	-		DZA65_RS09420	0.66	-0.6
1,983,122	-		DZA65_RS09420	0.68	+1.0
1,983,124	+		DZA65_RS09420	0.68	-1.2
1,983,124	+		DZA65_RS09420	0.68	-1.2
1,983,124	+		DZA65_RS09420	0.68	+0.2
1,983,124	+		DZA65_RS09420	0.68	+0.1
1,983,125	-		DZA65_RS09420	0.68	-1.0
1,983,125	-		DZA65_RS09420	0.68	+0.7
1,983,219	-		DZA65_RS09420	0.72	-0.3
1,983,221	+		DZA65_RS09420	0.72	-0.4
1,983,222	-		DZA65_RS09420	0.72	-1.4
1,983,222	-		DZA65_RS09420	0.72	-0.6
1,983,222	-		DZA65_RS09420	0.72	-1.0
1,983,321	+		DZA65_RS09420	0.76	+0.2
1,983,419	+		DZA65_RS09420	0.80	+0.1
1,983,420	-		DZA65_RS09420	0.80	+2.0
1,983,423	-		DZA65_RS09420	0.80	-1.2
1,983,446	+		DZA65_RS09420	0.81	-1.4
1,983,488	+		DZA65_RS09420	0.82	+0.2
1,983,488	+		DZA65_RS09420	0.82	-0.8
1,983,488	+		DZA65_RS09420	0.82	+0.2
1,983,488	+		DZA65_RS09420	0.82	-0.3
1,983,488	+		DZA65_RS09420	0.82	+1.0
1,983,488	+		DZA65_RS09420	0.82	+1.3
1,983,489	-		DZA65_RS09420	0.82	-0.1
1,983,489	-		DZA65_RS09420	0.82	+0.9
1,983,489	-		DZA65_RS09420	0.82	+0.1
1,983,489	-		DZA65_RS09420	0.82	+0.8
1,983,535	-		DZA65_RS09420	0.84	-2.4
1,983,621	+		DZA65_RS09420	0.88	+0.5
1,983,723	+				-0.7
1,983,723	+				-1.4
1,983,724	-				+0.2
1,983,778	+				+1.3
1,983,778	+				-0.3
1,983,778	+				+1.4
1,983,779	-				+0.2
1,983,927	-				+0.4
1,983,976	+		DZA65_RS22845	0.23	-0.8
1,983,977	-		DZA65_RS22845	0.23	-1.0
1,983,977	-		DZA65_RS22845	0.23	+1.2
1,984,028	+		DZA65_RS22845	0.54	+0.9
1,984,029	-		DZA65_RS22845	0.54	+0.4
1,984,044	+		DZA65_RS22845	0.63	-0.8
1,984,044	+		DZA65_RS22845	0.63	+2.4
1,984,044	+		DZA65_RS22845	0.63	-0.4
1,984,044	+				-0.6
1,984,045	-		DZA65_RS22845	0.64	-0.9
1,984,097	-				-0.9
1,984,148	+		DZA65_RS09425	0.25	-1.1
1,984,148	+		DZA65_RS09425	0.25	+1.8
1,984,220	+		DZA65_RS09425	0.61	+0.2
1,984,220	+		DZA65_RS09425	0.61	-1.2
1,984,220	+		DZA65_RS09425	0.61	-0.1
1,984,220	+		DZA65_RS09425	0.61	+1.2
1,984,220	+		DZA65_RS09425	0.61	+0.4
1,984,220	+		DZA65_RS09425	0.61	+1.5
1,984,220	+		DZA65_RS09425	0.61	-0.5
1,984,220	+		DZA65_RS09425	0.61	-0.3
1,984,220	+		DZA65_RS09425	0.61	-0.8
1,984,220	+		DZA65_RS09425	0.61	+1.0
1,984,220	+		DZA65_RS09425	0.61	-0.8
1,984,221	-		DZA65_RS09425	0.61	+0.6
1,984,221	-		DZA65_RS09425	0.61	+1.6
1,984,221	-		DZA65_RS09425	0.61	-0.0
1,984,221	-		DZA65_RS09425	0.61	+0.3
1,984,221	-		DZA65_RS09425	0.61	-0.0
1,984,221	-		DZA65_RS09425	0.61	-0.4
1,984,221	-		DZA65_RS09425	0.61	-2.9
1,984,221	-		DZA65_RS09425	0.61	+0.4
1,984,221	-		DZA65_RS09425	0.61	+0.6
1,984,221	-		DZA65_RS09425	0.61	-1.4
1,984,256	-		DZA65_RS09425	0.79	-1.6
1,984,287	+				+0.1
1,984,313	+				+0.5
1,984,313	+				+0.3
1,984,336	+				+0.1
1,984,337	-				+0.4
1,984,337	-				+1.1
1,984,344	-				-1.0
1,984,344	-				-1.2
1,984,344	-				-0.6
1,984,344	-				-0.7
1,984,344	-				+0.4
1,984,364	+				+0.8
1,984,365	-				+0.4
1,984,365	-				+1.1
1,984,365	-				+0.6
1,984,435	+				+0.7
1,984,435	+				-1.0
1,984,436	-				-0.6
1,984,454	+				+0.2
1,984,454	+				-0.1
1,984,454	+				+1.8
1,984,454	+				+1.2
1,984,454	+				+0.1
1,984,454	+				+1.0
1,984,454	+				+1.8
1,984,455	-				+1.0
1,984,456	+				+1.0
1,984,456	+				-1.3
1,984,456	+				-1.2
1,984,456	+				+1.4
1,984,456	+				+0.3
1,984,456	+				+0.9
1,984,456	+				+1.6
1,984,756	+				-0.1
1,984,757	-				-1.2
1,984,763	+				+0.1
1,984,770	-				+0.7
1,984,770	-				+0.3
1,984,808	+				+0.1
1,984,824	+				+0.1
1,984,824	+				+3.0
1,984,824	+				+1.3
1,984,824	+				+0.3
1,984,824	+				-0.1
1,984,825	-				-0.9
1,984,825	-				-0.4
1,984,825	-				-0.7
1,984,825	-				+0.2
1,984,826	+				-2.4
1,984,826	+				-0.1
1,984,826	+				-0.3
1,984,827	-				-0.4
1,984,827	-				+0.0
1,984,833	+				-0.1
1,984,834	-				-1.6
1,984,859	+				-0.7
1,984,859	+				+2.4
1,984,862	-				-0.7
1,984,862	-				-0.6
1,984,891	+				-0.0
1,984,891	+				-0.1
1,984,892	-				-1.0
1,984,898	+				+0.9
1,984,898	+				+0.4
1,984,899	-				+0.6
1,984,901	-				+0.3
1,984,901	-				+0.1
1,984,901	-				+1.6