Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09190

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,939,403	-				+1.1
1,939,421	+				-1.2
1,939,422	-				+1.4
1,939,422	-				-0.6
1,939,426	+				-0.0
1,939,426	+				+1.2
1,939,427	-				-0.1
1,939,465	-				+1.7
1,939,477	+				+0.0
1,939,478	-				+1.0
1,939,478	-				+0.6
1,939,478	-				+0.2
1,939,478	-				+0.4
1,939,540	+		DZA65_RS09180	0.29	-0.1
1,939,540	+		DZA65_RS09180	0.29	-0.7
1,939,627	+		DZA65_RS09180	0.61	+1.4
1,939,628	-		DZA65_RS09180	0.61	+1.7
1,939,651	-		DZA65_RS09180	0.70	+0.4
1,939,816	+				-0.2
1,939,816	+				+0.4
1,939,816	+				+0.4
1,939,816	+				-0.6
1,939,816	+				-1.4
1,939,816	+				+0.8
1,939,816	+				-0.6
1,939,816	+				-0.0
1,939,817	-				+0.5
1,939,817	-				+0.4
1,939,817	-				-0.6
1,939,817	-				+0.7
1,939,817	-				-0.6
1,939,817	-				-0.6
1,939,819	-				+0.5
1,939,819	-				+0.4
1,939,819	-				-0.2
1,939,860	+				-0.5
1,939,861	-				-0.1
1,939,899	+				-0.6
1,939,902	+				+0.4
1,939,902	+				+1.5
1,939,903	-				+0.5
1,939,915	+				-1.5
1,939,915	+				+0.7
1,939,915	+				-0.6
1,939,915	+				-0.9
1,939,915	+				-0.8
1,939,915	+				-1.6
1,939,915	+				+0.4
1,939,915	+				+0.6
1,939,915	+				-0.7
1,939,915	+				-2.6
1,939,916	-				+1.4
1,939,916	-				+0.4
1,939,916	-				+3.1
1,939,916	-				+0.1
1,939,916	-				-0.6
1,939,916	-				-0.4
1,939,916	-				+0.1
1,939,916	-				-1.4
1,940,014	+		DZA65_RS09185	0.26	-0.9
1,940,014	+		DZA65_RS09185	0.26	-0.3
1,940,014	+		DZA65_RS09185	0.26	+0.4
1,940,014	+		DZA65_RS09185	0.26	-0.6
1,940,014	+		DZA65_RS09185	0.26	-0.6
1,940,014	+		DZA65_RS09185	0.26	-0.9
1,940,014	+		DZA65_RS09185	0.26	+2.0
1,940,014	+		DZA65_RS09185	0.26	+1.0
1,940,014	+		DZA65_RS09185	0.26	+0.2
1,940,014	+		DZA65_RS09185	0.26	+0.7
1,940,014	+		DZA65_RS09185	0.26	-1.0
1,940,014	+		DZA65_RS09185	0.26	-1.3
1,940,015	-		DZA65_RS09185	0.26	+1.8
1,940,015	-		DZA65_RS09185	0.26	-0.6
1,940,015	-		DZA65_RS09185	0.26	+0.4
1,940,015	-		DZA65_RS09185	0.26	-0.9
1,940,015	-		DZA65_RS09185	0.26	+0.4
1,940,015	-		DZA65_RS09185	0.26	+0.6
1,940,015	-		DZA65_RS09185	0.26	+0.4
1,940,050	+		DZA65_RS09185	0.33	-0.6
1,940,098	+		DZA65_RS09185	0.42	-0.6
1,940,098	+		DZA65_RS09185	0.42	-0.2
1,940,098	+		DZA65_RS09185	0.42	+0.6
1,940,137	+		DZA65_RS09185	0.50	+0.1
1,940,138	-		DZA65_RS09185	0.50	-1.8
1,940,149	+		DZA65_RS09185	0.52	-1.9
1,940,149	+		DZA65_RS09185	0.52	+1.4
1,940,149	+		DZA65_RS09185	0.52	+0.1
1,940,150	-		DZA65_RS09185	0.52	+0.1
1,940,150	-		DZA65_RS09185	0.52	-2.2
1,940,194	+		DZA65_RS09185	0.61	-1.9
1,940,194	+				-0.6
1,940,195	-		DZA65_RS09185	0.61	+0.2
1,940,305	-		DZA65_RS09185	0.82	+0.7
1,940,335	-		DZA65_RS09185	0.88	+0.1
1,940,336	+		DZA65_RS09185	0.88	+1.0
1,940,336	+		DZA65_RS09185	0.88	-1.1
1,940,336	+		DZA65_RS09185	0.88	-0.4
1,940,336	+		DZA65_RS09185	0.88	+0.4
1,940,347	+				+1.0
1,940,361	+				+0.3
1,940,361	+				+0.4
1,940,361	+				+0.4
1,940,361	+				+1.0
1,940,361	+				+0.1
1,940,361	+				+0.7
1,940,361	+				-0.1
1,940,361	+				-1.2
1,940,361	+				+0.0
1,940,361	+				+0.9
1,940,361	+				+1.5
1,940,361	+				-0.2
1,940,362	-				+0.1
1,940,362	-				+1.6
1,940,362	-				-1.8
1,940,362	-				+0.5
1,940,362	-				-0.2
1,940,362	-				-0.7
1,940,362	-				-1.2
1,940,362	-				+0.7
1,940,487	-		DZA65_RS09190	0.12	-2.1
1,940,592	+		DZA65_RS09190	0.26	-0.8
1,940,592	+		DZA65_RS09190	0.26	+0.6
1,940,593	-		DZA65_RS09190	0.26	-1.0
1,940,593	-		DZA65_RS09190	0.26	+0.2
1,940,660	+		DZA65_RS09190	0.36	+0.1
1,940,661	-		DZA65_RS09190	0.36	-0.2
1,940,661	-		DZA65_RS09190	0.36	-0.6
1,940,760	-		DZA65_RS09190	0.49	-0.5
1,940,866	+		DZA65_RS09190	0.64	-1.2
1,940,866	+		DZA65_RS09190	0.64	+0.4
1,940,866	+		DZA65_RS09190	0.64	-0.6
1,940,867	-		DZA65_RS09190	0.64	-1.2
1,941,125	+				+0.5
1,941,125	+				-1.2
1,941,125	+				+0.0
1,941,125	+				-0.9
1,941,126	-				-0.9
1,941,128	-				+2.6
1,941,189	+		DZA65_RS09195	0.10	+1.4
1,941,189	+		DZA65_RS09195	0.10	+0.5
1,941,189	+		DZA65_RS09195	0.10	-0.3
1,941,190	-		DZA65_RS09195	0.10	-0.9
1,941,344	-		DZA65_RS09195	0.34	-1.9
1,941,422	-				-1.6
1,941,458	-		DZA65_RS09195	0.51	-1.0
1,941,471	+		DZA65_RS09195	0.53	+0.4
1,941,471	+		DZA65_RS09195	0.53	-0.9
1,941,471	+		DZA65_RS09195	0.53	-0.9
1,941,472	-		DZA65_RS09195	0.53	+1.0
1,941,472	-		DZA65_RS09195	0.53	-1.3
1,941,472	-		DZA65_RS09195	0.53	+1.3
1,941,490	+		DZA65_RS09195	0.56	-0.1
1,941,490	+		DZA65_RS09195	0.56	-1.6
1,941,490	+		DZA65_RS09195	0.56	-1.0
1,941,490	+		DZA65_RS09195	0.56	-0.5
1,941,491	-		DZA65_RS09195	0.56	+1.4
1,941,491	-		DZA65_RS09195	0.56	-1.0
1,941,523	+		DZA65_RS09195	0.61	+0.8
1,941,558	+		DZA65_RS09195	0.66	+0.1
1,941,558	+		DZA65_RS09195	0.66	+0.1
1,941,559	-		DZA65_RS09195	0.66	+0.2
1,941,559	-		DZA65_RS09195	0.66	+0.1
1,941,562	+		DZA65_RS09195	0.67	+4.6
1,941,563	-		DZA65_RS09195	0.67	+0.9
1,941,607	+		DZA65_RS09195	0.73	-1.8
1,941,611	+		DZA65_RS09195	0.74	-0.2
1,941,633	-		DZA65_RS09195	0.77	+1.5
1,941,636	+		DZA65_RS09195	0.78	+0.1
1,941,677	+		DZA65_RS09195	0.84	+1.3
1,941,678	-		DZA65_RS09195	0.84	-0.4
1,941,678	-		DZA65_RS09195	0.84	-0.1
1,941,678	-		DZA65_RS09195	0.84	-1.2
1,941,763	+				-0.6
1,941,763	+				-0.9
1,941,798	+				+0.7
1,941,798	+				-1.6
1,941,798	+				-0.5
1,941,798	+				-2.3
1,941,799	-				+0.1
1,941,799	-				-0.2
1,941,799	-				-1.6
1,941,799	-				+1.2
1,941,799	-				-0.7
1,941,801	+				-0.8
1,941,812	+				+0.1
1,941,813	-				-0.2
1,941,813	-				-1.0
1,941,813	-				+0.8
1,941,813	-				-1.6
1,941,813	-				-0.0
1,941,872	+				+1.7
1,941,872	+				-0.5
1,941,873	-				+1.0
1,941,910	+				+1.2
1,941,929	+				+2.0
1,941,929	+				+0.9
1,941,948	+				-0.2
1,941,948	+				-0.3
1,941,948	+				-0.5
1,941,948	+				-2.2
1,941,949	-				-2.0
1,941,949	-				-0.8
1,941,949	-				-0.1
1,941,978	+				+1.0
1,941,990	+				-0.3
1,941,990	+				-0.0
1,941,990	+				+0.4
1,941,991	-				-0.1
1,941,991	-				-0.6
1,941,991	-				-0.3
1,942,029	-		DZA65_RS09200	0.11	+1.8
1,942,029	-		DZA65_RS09200	0.11	+0.1
1,942,068	-		DZA65_RS09200	0.16	+0.6
1,942,091	-		DZA65_RS09200	0.19	+1.4