Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08935

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,881,567	+		DZA65_RS08930	0.37	+0.4
1,881,568	-		DZA65_RS08930	0.37	+3.8
1,881,708	-		DZA65_RS08930	0.49	+0.7
1,881,719	+		DZA65_RS08930	0.50	+0.5
1,881,719	+		DZA65_RS08930	0.50	+0.8
1,881,719	+		DZA65_RS08930	0.50	-0.3
1,881,720	-		DZA65_RS08930	0.50	-1.3
1,881,720	-				-0.0
1,881,720	-		DZA65_RS08930	0.50	-2.4
1,881,741	+		DZA65_RS08930	0.51	-2.4
1,881,741	+		DZA65_RS08930	0.51	-0.1
1,881,742	-		DZA65_RS08930	0.51	+1.1
1,881,742	-		DZA65_RS08930	0.51	+0.4
1,881,742	-		DZA65_RS08930	0.51	+0.8
1,881,758	+		DZA65_RS08930	0.53	-0.9
1,881,758	+		DZA65_RS08930	0.53	-0.1
1,881,758	+		DZA65_RS08930	0.53	+0.6
1,882,248	+				-0.0
1,882,249	-				+3.0
1,882,249	-				-2.8
1,882,325	+				-0.6
1,882,326	-				-0.1
1,882,336	+				-0.4
1,882,337	-				+0.4
1,882,337	-				+0.2
1,882,337	-				-0.2
1,882,337	-				+1.0
1,882,393	+				-2.3
1,882,393	+				+0.4
1,882,393	+				-1.9
1,882,393	+				+1.0
1,882,394	-				-0.6
1,882,394	-				-0.2
1,882,394	-				+1.2
1,882,394	-				-0.8
1,882,394	-				+0.3
1,882,394	-				-0.2
1,882,394	-				-0.7
1,882,394	-				-1.2
1,882,394	-				+0.7
1,882,394	-				-0.8
1,882,397	+				+1.3
1,882,397	+				-1.3
1,882,397	+				-0.6
1,882,397	+				-0.0
1,882,397	+				-0.6
1,882,397	+				+0.2
1,882,397	+				-1.2
1,882,398	-				-1.4
1,882,398	-				+1.0
1,882,398	-				-0.6
1,882,398	-				-1.1
1,882,398	-				-0.2
1,882,398	-				-1.0
1,882,398	-				+1.3
1,882,398	-				+0.0
1,882,398	-				+1.0
1,882,399	+				-2.6
1,882,400	-				+0.7
1,882,411	-				-0.5
1,882,550	+				-0.4
1,882,550	+				+0.2
1,882,550	+				-1.2
1,882,550	+				+0.7
1,882,550	+				-0.3
1,882,551	-				+0.4
1,882,551	-				-1.5
1,882,551	-				-0.1
1,882,551	-				-1.2
1,882,551	-				+1.4
1,882,551	-				-1.4
1,882,551	-				-0.3
1,882,602	+				+0.1
1,882,603	-				-1.6
1,882,836	-		DZA65_RS08935	0.18	-0.0
1,883,091	+		DZA65_RS08935	0.33	-0.6
1,883,104	+		DZA65_RS08935	0.34	-1.7
1,883,104	+		DZA65_RS08935	0.34	-1.9
1,883,104	+		DZA65_RS08935	0.34	-0.2
1,883,105	-		DZA65_RS08935	0.34	-0.3
1,883,105	-		DZA65_RS08935	0.34	-0.8
1,883,105	-		DZA65_RS08935	0.34	+0.3
1,883,105	-		DZA65_RS08935	0.34	-0.2
1,883,116	-		DZA65_RS08935	0.34	-1.1
1,883,116	-		DZA65_RS08935	0.34	+0.8
1,883,558	+		DZA65_RS08935	0.60	-1.6
1,883,558	+		DZA65_RS08935	0.60	+0.0
1,883,558	+		DZA65_RS08935	0.60	+0.1
1,883,558	+		DZA65_RS08935	0.60	-1.3
1,883,558	+		DZA65_RS08935	0.60	-1.0
1,883,559	-		DZA65_RS08935	0.61	-0.9
1,883,559	-		DZA65_RS08935	0.61	-1.6
1,883,559	-		DZA65_RS08935	0.61	-0.6
1,883,559	-		DZA65_RS08935	0.61	-2.4
1,883,600	+		DZA65_RS08935	0.63	-0.3
1,883,600	+		DZA65_RS08935	0.63	-0.2
1,883,600	+		DZA65_RS08935	0.63	-1.2
1,883,600	+		DZA65_RS08935	0.63	-1.0
1,883,600	+		DZA65_RS08935	0.63	-0.9
1,883,601	-		DZA65_RS08935	0.63	-3.1
1,883,601	-		DZA65_RS08935	0.63	-1.1
1,883,601	-		DZA65_RS08935	0.63	-1.0
1,883,601	-		DZA65_RS08935	0.63	-1.2
1,883,663	+		DZA65_RS08935	0.67	-1.2
1,883,663	+		DZA65_RS08935	0.67	+0.6
1,883,664	-		DZA65_RS08935	0.67	-0.1
1,883,664	-		DZA65_RS08935	0.67	-0.3
1,883,664	-		DZA65_RS08935	0.67	-1.7
1,883,693	+		DZA65_RS08935	0.68	+1.0
1,883,694	-		DZA65_RS08935	0.68	-1.9
1,883,706	+		DZA65_RS08935	0.69	-1.1
1,883,706	+		DZA65_RS08935	0.69	-1.2
1,883,718	+		DZA65_RS08935	0.70	-0.7
1,883,718	+		DZA65_RS08935	0.70	-1.8
1,883,757	+		DZA65_RS08935	0.72	-1.1
1,883,788	+		DZA65_RS08935	0.74	-1.1
1,883,789	-		DZA65_RS08935	0.74	-1.9
1,883,789	-		DZA65_RS08935	0.74	+2.1
1,883,789	-		DZA65_RS08935	0.74	-0.9
1,883,817	+		DZA65_RS08935	0.76	-1.3
1,883,817	+		DZA65_RS08935	0.76	-0.6
1,883,817	+		DZA65_RS08935	0.76	-1.0
1,883,827	-		DZA65_RS08935	0.76	-0.8
1,883,844	-		DZA65_RS08935	0.77	-1.6
1,883,850	+		DZA65_RS08935	0.78	+0.4
1,883,850	+		DZA65_RS08935	0.78	+0.1
1,883,850	+		DZA65_RS08935	0.78	+0.1
1,883,850	+		DZA65_RS08935	0.78	+2.8
1,883,850	+		DZA65_RS08935	0.78	-0.8
1,883,850	+		DZA65_RS08935	0.78	-0.4
1,883,851	-		DZA65_RS08935	0.78	-0.5
1,883,851	-		DZA65_RS08935	0.78	-1.8
1,883,851	-		DZA65_RS08935	0.78	+1.0
1,883,873	+		DZA65_RS08935	0.79	+0.7
1,883,873	+		DZA65_RS08935	0.79	+0.0
1,883,874	-		DZA65_RS08935	0.79	-1.7
1,883,874	-		DZA65_RS08935	0.79	-0.9
1,883,874	-		DZA65_RS08935	0.79	-0.5
1,883,874	-		DZA65_RS08935	0.79	-0.4
1,883,874	-		DZA65_RS08935	0.79	-1.3
1,883,916	+		DZA65_RS08935	0.82	-1.3
1,883,916	+		DZA65_RS08935	0.82	+0.7
1,883,916	+		DZA65_RS08935	0.82	-0.6
1,883,917	-		DZA65_RS08935	0.82	-0.7
1,883,918	+		DZA65_RS08935	0.82	-0.6
1,883,918	+		DZA65_RS08935	0.82	-1.8
1,883,918	+		DZA65_RS08935	0.82	-0.5
1,883,918	+		DZA65_RS08935	0.82	-1.2
1,883,919	-		DZA65_RS08935	0.82	-1.2
1,883,963	+		DZA65_RS08935	0.84	-1.9
1,883,964	-		DZA65_RS08935	0.84	-1.4
1,883,968	+		DZA65_RS08935	0.85	-0.6
1,883,968	+		DZA65_RS08935	0.85	+0.7
1,883,969	-		DZA65_RS08935	0.85	+0.6
1,883,995	-		DZA65_RS08935	0.86	+0.4
1,884,003	-		DZA65_RS08935	0.87	-0.6
1,884,003	-		DZA65_RS08935	0.87	+1.2
1,884,003	-		DZA65_RS08935	0.87	-1.1
1,884,147	+				-0.1
1,884,147	+				+0.1
1,884,175	-				+1.6
1,884,186	-				-0.1
1,884,186	-				-0.2
1,884,186	-				+2.0
1,884,194	+				+1.3
1,884,194	+				+0.7
1,884,194	+				-0.3
1,884,194	+				+0.1
1,884,195	-				-1.3
1,884,195	-				+0.1
1,884,195	-				-0.9
1,884,195	-				+0.9
1,884,195	-				+0.7
1,884,207	+				-1.1
1,884,207	+				+0.7
1,884,207	+				-0.2
1,884,207	+				-1.9
1,884,207	+				-0.3
1,884,282	-				-0.2
1,884,287	-				-0.1
1,884,297	+				-2.6
1,884,298	-				-1.6
1,884,313	+				+0.6
1,884,317	+				-1.9
1,884,318	-				+0.7
1,884,343	-				-0.8
1,884,343	-				+0.7
1,884,343	-				-2.2
1,884,357	+				-1.0
1,884,358	-				-0.2
1,884,366	+				-2.8
1,884,384	+				-1.5
1,884,384	+				-0.8
1,884,384	+				+1.4
1,884,384	+				-1.4
1,884,384	+				-0.3
1,884,384	+				-0.8
1,884,384	+				+0.4
1,884,384	+				-1.2
1,884,385	-				+0.7
1,884,385	-				-0.6
1,884,387	+				+0.1
1,884,432	-				+0.4
1,884,480	+				+0.2
1,884,480	+				+0.4
1,884,528	+				-0.3
1,884,528	+				-0.9
1,884,528	+				-0.3
1,884,528	+				+0.1
1,884,528	+				-1.2
1,884,528	+				-0.6
1,884,528	+				-0.3
1,884,528	+				-1.6
1,884,528	+				-0.4
1,884,528	+				-0.8
1,884,528	+				-1.2
1,884,529	-				+0.3
1,884,529	-				+1.1
1,884,529	-				-0.6
1,884,529	-				+0.2
1,884,529	-				+0.1
1,884,529	-				+0.2
1,884,692	+		DZA65_RS08940	0.21	-0.6
1,884,692	+		DZA65_RS08940	0.21	-0.9
1,884,693	-		DZA65_RS08940	0.21	+2.4
1,884,693	-		DZA65_RS08940	0.21	+0.7
1,884,693	-		DZA65_RS08940	0.21	-0.7
1,884,712	+		DZA65_RS08940	0.23	+0.6
1,884,712	+		DZA65_RS08940	0.23	-0.7
1,884,770	+		DZA65_RS08940	0.30	-1.6
1,884,770	+		DZA65_RS08940	0.30	-0.2
1,884,771	-		DZA65_RS08940	0.30	-1.2
1,884,776	-		DZA65_RS08940	0.30	+1.3
1,884,824	+		DZA65_RS08940	0.36	+0.4
1,884,851	+		DZA65_RS08940	0.39	+1.4
1,884,916	+		DZA65_RS08940	0.46	-0.6
1,884,917	-		DZA65_RS08940	0.46	+0.4
1,885,018	+		DZA65_RS08940	0.58	-0.8
1,885,018	+		DZA65_RS08940	0.58	-0.9
1,885,018	+		DZA65_RS08940	0.58	-0.4
1,885,018	+		DZA65_RS08940	0.58	-1.4
1,885,018	+		DZA65_RS08940	0.58	-1.9
1,885,018	+		DZA65_RS08940	0.58	+0.8
1,885,019	-		DZA65_RS08940	0.58	+0.1
1,885,019	-		DZA65_RS08940	0.58	+0.8
1,885,019	-		DZA65_RS08940	0.58	+0.1
1,885,019	-		DZA65_RS08940	0.58	-0.7
1,885,019	-		DZA65_RS08940	0.58	-1.9
1,885,019	-		DZA65_RS08940	0.58	-1.2
1,885,127	+		DZA65_RS08940	0.70	+0.4
1,885,141	+		DZA65_RS08940	0.71	-1.9
1,885,141	+		DZA65_RS08940	0.71	-0.5
1,885,141	+		DZA65_RS08940	0.71	-0.3
1,885,141	+		DZA65_RS08940	0.71	-0.9
1,885,142	-		DZA65_RS08940	0.72	-0.6