Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08915

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08905 and DZA65_RS08910 are separated by 70 nucleotidesDZA65_RS08910 and DZA65_RS08915 are separated by 281 nucleotidesDZA65_RS08915 and DZA65_RS08920 are separated by 115 nucleotidesDZA65_RS08920 and DZA65_RS08925 are separated by 89 nucleotides DZA65_RS08905: DZA65_RS08905 - YqaE/Pmp3 family membrane protein, at 1,877,622 to 1,877,789 _RS08905 DZA65_RS08910: DZA65_RS08910 - flavodoxin family protein, at 1,877,860 to 1,878,414 _RS08910 DZA65_RS08915: DZA65_RS08915 - glycosyltransferase, at 1,878,696 to 1,879,748 _RS08915 DZA65_RS08920: DZA65_RS08920 - acyl-CoA thioesterase, at 1,879,864 to 1,880,259 _RS08920 DZA65_RS08925: DZA65_RS08925 - molybdopterin-synthase adenylyltransferase MoeB, at 1,880,349 to 1,881,107 _RS08925 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1877.733 kb on + strand, within DZA65_RS08905at 1877.733 kb on + strand, within DZA65_RS08905at 1877.734 kb on - strand, within DZA65_RS08905at 1877.737 kb on + strand, within DZA65_RS08905at 1877.737 kb on + strand, within DZA65_RS08905at 1877.737 kb on + strand, within DZA65_RS08905at 1877.737 kb on + strand, within DZA65_RS08905at 1877.737 kb on + strand, within DZA65_RS08905at 1877.737 kb on + strand, within DZA65_RS08905at 1877.747 kb on - strand, within DZA65_RS08905at 1877.807 kb on + strandat 1877.891 kb on - strandat 1877.891 kb on - strandat 1878.092 kb on + strand, within DZA65_RS08910at 1878.092 kb on + strand, within DZA65_RS08910at 1878.092 kb on + strand, within DZA65_RS08910at 1878.093 kb on - strand, within DZA65_RS08910at 1878.236 kb on + strand, within DZA65_RS08910at 1878.236 kb on + strand, within DZA65_RS08910at 1878.236 kb on + strand, within DZA65_RS08910at 1878.236 kb on + strand, within DZA65_RS08910at 1878.236 kb on + strand, within DZA65_RS08910at 1878.236 kb on + strand, within DZA65_RS08910at 1878.237 kb on - strand, within DZA65_RS08910at 1878.237 kb on - strand, within DZA65_RS08910at 1878.237 kb on - strand, within DZA65_RS08910at 1878.237 kb on - strand, within DZA65_RS08910at 1878.363 kb on + strandat 1878.389 kb on + strandat 1878.390 kb on - strandat 1878.393 kb on - strandat 1878.429 kb on + strandat 1878.452 kb on + strandat 1878.486 kb on + strandat 1878.486 kb on + strandat 1878.486 kb on + strandat 1878.487 kb on - strandat 1878.487 kb on - strandat 1878.519 kb on + strandat 1878.530 kb on - strandat 1878.534 kb on - strandat 1878.538 kb on + strandat 1878.562 kb on + strandat 1878.563 kb on - strandat 1878.563 kb on - strandat 1878.566 kb on - strandat 1878.584 kb on - strandat 1878.628 kb on + strandat 1878.634 kb on + strandat 1878.634 kb on + strandat 1878.634 kb on + strandat 1878.635 kb on - strandat 1878.635 kb on - strandat 1878.736 kb on + strandat 1878.737 kb on - strandat 1878.806 kb on + strand, within DZA65_RS08915at 1878.815 kb on + strand, within DZA65_RS08915at 1878.823 kb on + strand, within DZA65_RS08915at 1878.843 kb on - strand, within DZA65_RS08915at 1878.991 kb on + strand, within DZA65_RS08915at 1879.015 kb on + strand, within DZA65_RS08915at 1879.021 kb on + strand, within DZA65_RS08915at 1879.044 kb on - strandat 1879.045 kb on + strand, within DZA65_RS08915at 1879.045 kb on + strand, within DZA65_RS08915at 1879.045 kb on + strand, within DZA65_RS08915at 1879.045 kb on + strand, within DZA65_RS08915at 1879.051 kb on + strand, within DZA65_RS08915at 1879.051 kb on + strand, within DZA65_RS08915at 1879.056 kb on - strand, within DZA65_RS08915at 1879.056 kb on - strand, within DZA65_RS08915at 1879.108 kb on + strand, within DZA65_RS08915at 1879.109 kb on - strand, within DZA65_RS08915at 1879.109 kb on - strand, within DZA65_RS08915at 1879.127 kb on - strand, within DZA65_RS08915at 1879.230 kb on + strand, within DZA65_RS08915at 1879.241 kb on + strand, within DZA65_RS08915at 1879.241 kb on + strand, within DZA65_RS08915at 1879.299 kb on - strand, within DZA65_RS08915at 1879.339 kb on + strand, within DZA65_RS08915at 1879.363 kb on - strand, within DZA65_RS08915at 1879.363 kb on - strand, within DZA65_RS08915at 1879.415 kb on - strand, within DZA65_RS08915at 1879.415 kb on - strand, within DZA65_RS08915at 1879.415 kb on - strand, within DZA65_RS08915at 1879.515 kb on + strand, within DZA65_RS08915at 1879.541 kb on - strand, within DZA65_RS08915at 1879.813 kb on + strandat 1879.813 kb on + strandat 1879.813 kb on + strandat 1879.813 kb on + strandat 1879.814 kb on - strandat 1879.814 kb on - strandat 1879.814 kb on - strandat 1879.814 kb on - strandat 1879.835 kb on + strandat 1879.835 kb on + strandat 1879.849 kb on + strandat 1879.849 kb on + strandat 1879.850 kb on - strandat 1879.871 kb on - strandat 1879.949 kb on + strand, within DZA65_RS08920at 1879.949 kb on + strand, within DZA65_RS08920at 1879.950 kb on - strand, within DZA65_RS08920at 1879.950 kb on - strand, within DZA65_RS08920at 1879.950 kb on - strand, within DZA65_RS08920at 1879.964 kb on + strand, within DZA65_RS08920at 1879.965 kb on - strand, within DZA65_RS08920at 1879.965 kb on - strand, within DZA65_RS08920at 1879.972 kb on + strand, within DZA65_RS08920at 1879.973 kb on - strand, within DZA65_RS08920at 1879.973 kb on - strand, within DZA65_RS08920at 1879.973 kb on - strand, within DZA65_RS08920at 1880.095 kb on - strand, within DZA65_RS08920at 1880.119 kb on - strand, within DZA65_RS08920at 1880.119 kb on - strand, within DZA65_RS08920at 1880.161 kb on + strand, within DZA65_RS08920at 1880.162 kb on - strand, within DZA65_RS08920at 1880.181 kb on + strand, within DZA65_RS08920at 1880.181 kb on + strand, within DZA65_RS08920at 1880.181 kb on + strand, within DZA65_RS08920at 1880.181 kb on + strand, within DZA65_RS08920at 1880.181 kb on + strandat 1880.181 kb on + strand, within DZA65_RS08920at 1880.182 kb on - strand, within DZA65_RS08920at 1880.241 kb on + strandat 1880.241 kb on + strandat 1880.242 kb on - strandat 1880.242 kb on - strandat 1880.262 kb on + strandat 1880.263 kb on - strandat 1880.273 kb on + strandat 1880.274 kb on - strandat 1880.274 kb on - strandat 1880.279 kb on + strandat 1880.299 kb on + strandat 1880.300 kb on - strandat 1880.300 kb on - strandat 1880.331 kb on - strandat 1880.529 kb on - strandat 1880.608 kb on + strand, within DZA65_RS08925at 1880.609 kb on - strand, within DZA65_RS08925at 1880.609 kb on - strandat 1880.609 kb on - strand, within DZA65_RS08925at 1880.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,877,733 + DZA65_RS08905 0.66 -1.2
1,877,733 + DZA65_RS08905 0.66 -1.1
1,877,734 - DZA65_RS08905 0.67 +0.4
1,877,737 + DZA65_RS08905 0.68 -0.6
1,877,737 + DZA65_RS08905 0.68 +0.2
1,877,737 + DZA65_RS08905 0.68 -0.6
1,877,737 + DZA65_RS08905 0.68 +0.0
1,877,737 + DZA65_RS08905 0.68 +0.0
1,877,737 + DZA65_RS08905 0.68 -2.3
1,877,747 - DZA65_RS08905 0.74 -0.2
1,877,807 + -0.8
1,877,891 - +0.1
1,877,891 - -2.1
1,878,092 + DZA65_RS08910 0.42 +0.4
1,878,092 + DZA65_RS08910 0.42 +0.1
1,878,092 + DZA65_RS08910 0.42 +0.6
1,878,093 - DZA65_RS08910 0.42 -1.9
1,878,236 + DZA65_RS08910 0.68 -0.6
1,878,236 + DZA65_RS08910 0.68 -0.6
1,878,236 + DZA65_RS08910 0.68 -1.1
1,878,236 + DZA65_RS08910 0.68 +1.0
1,878,236 + DZA65_RS08910 0.68 -0.6
1,878,236 + DZA65_RS08910 0.68 -1.9
1,878,237 - DZA65_RS08910 0.68 -1.6
1,878,237 - DZA65_RS08910 0.68 -1.6
1,878,237 - DZA65_RS08910 0.68 -0.5
1,878,237 - DZA65_RS08910 0.68 -1.5
1,878,363 + -0.8
1,878,389 + -2.3
1,878,390 - +1.4
1,878,393 - -0.7
1,878,429 + +0.2
1,878,452 + -0.6
1,878,486 + -0.2
1,878,486 + -0.4
1,878,486 + +0.5
1,878,487 - -0.1
1,878,487 - -0.2
1,878,519 + +1.7
1,878,530 - +1.7
1,878,534 - -0.8
1,878,538 + -2.7
1,878,562 + -0.6
1,878,563 - +3.3
1,878,563 - -1.3
1,878,566 - +0.7
1,878,584 - +0.2
1,878,628 + +0.3
1,878,634 + -2.4
1,878,634 + -0.3
1,878,634 + +0.4
1,878,635 - +0.9
1,878,635 - +0.1
1,878,736 + -1.9
1,878,737 - +0.3
1,878,806 + DZA65_RS08915 0.10 +0.3
1,878,815 + DZA65_RS08915 0.11 +2.0
1,878,823 + DZA65_RS08915 0.12 +0.7
1,878,843 - DZA65_RS08915 0.14 +0.4
1,878,991 + DZA65_RS08915 0.28 +0.7
1,879,015 + DZA65_RS08915 0.30 -0.6
1,879,021 + DZA65_RS08915 0.31 -0.0
1,879,044 - +2.0
1,879,045 + DZA65_RS08915 0.33 +0.4
1,879,045 + DZA65_RS08915 0.33 -0.8
1,879,045 + DZA65_RS08915 0.33 +0.4
1,879,045 + DZA65_RS08915 0.33 -0.6
1,879,051 + DZA65_RS08915 0.34 -0.4
1,879,051 + DZA65_RS08915 0.34 -0.7
1,879,056 - DZA65_RS08915 0.34 +2.0
1,879,056 - DZA65_RS08915 0.34 +0.8
1,879,108 + DZA65_RS08915 0.39 -2.2
1,879,109 - DZA65_RS08915 0.39 -1.0
1,879,109 - DZA65_RS08915 0.39 -1.3
1,879,127 - DZA65_RS08915 0.41 +0.3
1,879,230 + DZA65_RS08915 0.51 -1.6
1,879,241 + DZA65_RS08915 0.52 -1.9
1,879,241 + DZA65_RS08915 0.52 -1.6
1,879,299 - DZA65_RS08915 0.57 -0.5
1,879,339 + DZA65_RS08915 0.61 -1.1
1,879,363 - DZA65_RS08915 0.63 -2.8
1,879,363 - DZA65_RS08915 0.63 -1.7
1,879,415 - DZA65_RS08915 0.68 -0.5
1,879,415 - DZA65_RS08915 0.68 -0.0
1,879,415 - DZA65_RS08915 0.68 +0.9
1,879,515 + DZA65_RS08915 0.78 +0.6
1,879,541 - DZA65_RS08915 0.80 +0.1
1,879,813 + -0.4
1,879,813 + -1.3
1,879,813 + +0.4
1,879,813 + -1.2
1,879,814 - -1.9
1,879,814 - +0.8
1,879,814 - -1.5
1,879,814 - -0.9
1,879,835 + +3.5
1,879,835 + -0.7
1,879,849 + -0.6
1,879,849 + -0.2
1,879,850 - -0.0
1,879,871 - -0.1
1,879,949 + DZA65_RS08920 0.21 -2.9
1,879,949 + DZA65_RS08920 0.21 +2.4
1,879,950 - DZA65_RS08920 0.22 -1.2
1,879,950 - DZA65_RS08920 0.22 -1.7
1,879,950 - DZA65_RS08920 0.22 -0.9
1,879,964 + DZA65_RS08920 0.25 +0.1
1,879,965 - DZA65_RS08920 0.26 -2.1
1,879,965 - DZA65_RS08920 0.26 -0.6
1,879,972 + DZA65_RS08920 0.27 -0.3
1,879,973 - DZA65_RS08920 0.28 +0.2
1,879,973 - DZA65_RS08920 0.28 -2.4
1,879,973 - DZA65_RS08920 0.28 -0.9
1,880,095 - DZA65_RS08920 0.58 -0.2
1,880,119 - DZA65_RS08920 0.64 -2.8
1,880,119 - DZA65_RS08920 0.64 +0.7
1,880,161 + DZA65_RS08920 0.75 +0.2
1,880,162 - DZA65_RS08920 0.75 -1.0
1,880,181 + DZA65_RS08920 0.80 -0.5
1,880,181 + DZA65_RS08920 0.80 -0.8
1,880,181 + DZA65_RS08920 0.80 +0.5
1,880,181 + DZA65_RS08920 0.80 -0.6
1,880,181 + -1.6
1,880,181 + DZA65_RS08920 0.80 -2.2
1,880,182 - DZA65_RS08920 0.80 +0.1
1,880,241 + -0.8
1,880,241 + +0.5
1,880,242 - -1.9
1,880,242 - -0.8
1,880,262 + -0.4
1,880,263 - -0.3
1,880,273 + +0.3
1,880,274 - -0.3
1,880,274 - +1.1
1,880,279 + -1.0
1,880,299 + +0.2
1,880,300 - +0.9
1,880,300 - -1.0
1,880,331 - +0.3
1,880,529 - -0.6
1,880,608 + DZA65_RS08925 0.34 -1.2
1,880,609 - DZA65_RS08925 0.34 +0.0
1,880,609 - -0.6
1,880,609 - DZA65_RS08925 0.34 +1.8
1,880,609 - +1.7

Or see this region's nucleotide sequence