Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07145 and DZA65_RS07150 are separated by 141 nucleotides DZA65_RS07150 and DZA65_RS22735 are separated by 102 nucleotides
DZA65_RS07145: DZA65_RS07145 - glycosyltransferase family 2 protein, at 1,483,643 to 1,484,551
_RS07145
DZA65_RS07150: DZA65_RS07150 - hypothetical protein, at 1,484,693 to 1,486,252
_RS07150
DZA65_RS22735: DZA65_RS22735 - hypothetical protein, at 1,486,355 to 1,487,572
_RS22735
Position (kb)
1484
1485
1486
1487 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1484.726 kb on + strand at 1484.854 kb on + strand, within DZA65_RS07150 at 1484.859 kb on + strand, within DZA65_RS07150 at 1484.864 kb on - strand, within DZA65_RS07150 at 1485.301 kb on - strand, within DZA65_RS07150 at 1485.359 kb on + strand, within DZA65_RS07150 at 1485.359 kb on + strand, within DZA65_RS07150 at 1485.360 kb on - strand, within DZA65_RS07150 at 1485.437 kb on + strand at 1485.574 kb on + strand, within DZA65_RS07150 at 1485.598 kb on + strand, within DZA65_RS07150 at 1485.640 kb on - strand, within DZA65_RS07150 at 1485.686 kb on - strand, within DZA65_RS07150 at 1485.716 kb on - strand, within DZA65_RS07150 at 1485.917 kb on - strand, within DZA65_RS07150 at 1486.124 kb on + strand at 1486.125 kb on - strand at 1486.177 kb on + strand at 1486.222 kb on - strand at 1486.222 kb on - strand at 1486.381 kb on + strand at 1486.561 kb on - strand, within DZA65_RS22735 at 1486.694 kb on + strand, within DZA65_RS22735 at 1486.804 kb on - strand, within DZA65_RS22735 at 1487.003 kb on - strand, within DZA65_RS22735
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,484,726 + -3.2 1,484,854 + DZA65_RS07150 0.10 -2.9 1,484,859 + DZA65_RS07150 0.11 -0.6 1,484,864 - DZA65_RS07150 0.11 +0.2 1,485,301 - DZA65_RS07150 0.39 -1.4 1,485,359 + DZA65_RS07150 0.43 -1.0 1,485,359 + DZA65_RS07150 0.43 +0.0 1,485,360 - DZA65_RS07150 0.43 -1.6 1,485,437 + +0.6 1,485,574 + DZA65_RS07150 0.56 -0.6 1,485,598 + DZA65_RS07150 0.58 +2.2 1,485,640 - DZA65_RS07150 0.61 -1.7 1,485,686 - DZA65_RS07150 0.64 -1.4 1,485,716 - DZA65_RS07150 0.66 -1.9 1,485,917 - DZA65_RS07150 0.78 -2.2 1,486,124 + -0.4 1,486,125 - -0.3 1,486,177 + -1.7 1,486,222 - +0.5 1,486,222 - +0.6 1,486,381 + -0.2 1,486,561 - DZA65_RS22735 0.17 -2.1 1,486,694 + DZA65_RS22735 0.28 -1.3 1,486,804 - DZA65_RS22735 0.37 -1.8 1,487,003 - DZA65_RS22735 0.53 -1.4
Or see this region's nucleotide sequence