Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07150

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07145 and DZA65_RS07150 are separated by 141 nucleotidesDZA65_RS07150 and DZA65_RS22735 are separated by 102 nucleotides DZA65_RS07145: DZA65_RS07145 - glycosyltransferase family 2 protein, at 1,483,643 to 1,484,551 _RS07145 DZA65_RS07150: DZA65_RS07150 - hypothetical protein, at 1,484,693 to 1,486,252 _RS07150 DZA65_RS22735: DZA65_RS22735 - hypothetical protein, at 1,486,355 to 1,487,572 _RS22735 Position (kb) 1484 1485 1486 1487Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1484.726 kb on + strandat 1484.854 kb on + strand, within DZA65_RS07150at 1484.859 kb on + strand, within DZA65_RS07150at 1484.864 kb on - strand, within DZA65_RS07150at 1485.301 kb on - strand, within DZA65_RS07150at 1485.359 kb on + strand, within DZA65_RS07150at 1485.359 kb on + strand, within DZA65_RS07150at 1485.360 kb on - strand, within DZA65_RS07150at 1485.437 kb on + strandat 1485.574 kb on + strand, within DZA65_RS07150at 1485.598 kb on + strand, within DZA65_RS07150at 1485.640 kb on - strand, within DZA65_RS07150at 1485.686 kb on - strand, within DZA65_RS07150at 1485.716 kb on - strand, within DZA65_RS07150at 1485.917 kb on - strand, within DZA65_RS07150at 1486.124 kb on + strandat 1486.125 kb on - strandat 1486.177 kb on + strandat 1486.222 kb on - strandat 1486.222 kb on - strandat 1486.381 kb on + strandat 1486.561 kb on - strand, within DZA65_RS22735at 1486.694 kb on + strand, within DZA65_RS22735at 1486.804 kb on - strand, within DZA65_RS22735at 1487.003 kb on - strand, within DZA65_RS22735

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,484,726 + -3.2
1,484,854 + DZA65_RS07150 0.10 -2.9
1,484,859 + DZA65_RS07150 0.11 -0.6
1,484,864 - DZA65_RS07150 0.11 +0.2
1,485,301 - DZA65_RS07150 0.39 -1.4
1,485,359 + DZA65_RS07150 0.43 -1.0
1,485,359 + DZA65_RS07150 0.43 +0.0
1,485,360 - DZA65_RS07150 0.43 -1.6
1,485,437 + +0.6
1,485,574 + DZA65_RS07150 0.56 -0.6
1,485,598 + DZA65_RS07150 0.58 +2.2
1,485,640 - DZA65_RS07150 0.61 -1.7
1,485,686 - DZA65_RS07150 0.64 -1.4
1,485,716 - DZA65_RS07150 0.66 -1.9
1,485,917 - DZA65_RS07150 0.78 -2.2
1,486,124 + -0.4
1,486,125 - -0.3
1,486,177 + -1.7
1,486,222 - +0.5
1,486,222 - +0.6
1,486,381 + -0.2
1,486,561 - DZA65_RS22735 0.17 -2.1
1,486,694 + DZA65_RS22735 0.28 -1.3
1,486,804 - DZA65_RS22735 0.37 -1.8
1,487,003 - DZA65_RS22735 0.53 -1.4

Or see this region's nucleotide sequence