Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05635

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,157,016	-		DZA65_RS05625	0.77	-2.0
1,157,021	+		DZA65_RS05625	0.77	-0.6
1,157,022	-		DZA65_RS05625	0.77	+0.2
1,157,027	+		DZA65_RS05625	0.78	-0.1
1,157,027	+		DZA65_RS05625	0.78	-1.2
1,157,028	-		DZA65_RS05625	0.78	+1.9
1,157,028	-		DZA65_RS05625	0.78	+0.2
1,157,028	-		DZA65_RS05625	0.78	-0.5
1,157,028	-		DZA65_RS05625	0.78	-0.9
1,157,091	+		DZA65_RS05625	0.82	+0.1
1,157,092	-		DZA65_RS05625	0.82	+0.3
1,157,113	+		DZA65_RS05625	0.84	-0.6
1,157,114	-		DZA65_RS05625	0.84	+0.9
1,157,139	-		DZA65_RS05625	0.86	-0.6
1,157,199	-				+2.2
1,157,247	-				-0.3
1,157,285	-				+1.2
1,157,368	-				-0.2
1,157,371	+				-0.7
1,157,371	+				+0.1
1,157,371	+				-2.2
1,157,371	+				+0.2
1,157,372	-				-1.2
1,157,372	-				-0.5
1,157,374	+				+0.8
1,157,424	-		DZA65_RS05630	0.14	+0.1
1,157,424	-		DZA65_RS05630	0.14	-0.3
1,157,433	-		DZA65_RS05630	0.15	+0.7
1,157,433	-		DZA65_RS05630	0.15	+0.3
1,157,480	+		DZA65_RS05630	0.22	-0.8
1,157,492	-		DZA65_RS05630	0.24	+1.2
1,157,492	-		DZA65_RS05630	0.24	+2.2
1,157,494	-		DZA65_RS05630	0.25	-1.0
1,157,503	-		DZA65_RS05630	0.26	-0.9
1,157,509	+		DZA65_RS05630	0.27	-0.2
1,157,513	-		DZA65_RS05630	0.27	+0.1
1,157,513	-		DZA65_RS05630	0.27	+0.9
1,157,585	-		DZA65_RS05630	0.38	+1.7
1,157,585	-		DZA65_RS05630	0.38	+0.3
1,157,587	+		DZA65_RS05630	0.38	-0.3
1,157,587	+		DZA65_RS05630	0.38	+1.4
1,157,588	-		DZA65_RS05630	0.39	-1.9
1,157,588	-		DZA65_RS05630	0.39	+1.1
1,157,588	-		DZA65_RS05630	0.39	+0.7
1,157,594	+		DZA65_RS05630	0.39	+0.2
1,157,594	+		DZA65_RS05630	0.39	+0.3
1,157,595	-		DZA65_RS05630	0.40	+0.1
1,157,596	+		DZA65_RS05630	0.40	-0.3
1,157,597	-		DZA65_RS05630	0.40	+1.4
1,157,597	-		DZA65_RS05630	0.40	-0.5
1,157,615	+		DZA65_RS05630	0.43	-0.0
1,157,616	-		DZA65_RS05630	0.43	+1.4
1,157,652	-		DZA65_RS05630	0.48	+0.1
1,157,670	+		DZA65_RS05630	0.51	+1.7
1,157,683	+		DZA65_RS05630	0.53	+0.3
1,157,683	+		DZA65_RS05630	0.53	-0.6
1,157,683	+		DZA65_RS05630	0.53	+0.7
1,157,683	+		DZA65_RS05630	0.53	-0.8
1,157,683	+		DZA65_RS05630	0.53	+0.3
1,157,683	+		DZA65_RS05630	0.53	-0.9
1,157,683	+		DZA65_RS05630	0.53	+0.8
1,157,683	+		DZA65_RS05630	0.53	-0.9
1,157,684	-		DZA65_RS05630	0.53	-1.2
1,157,684	-		DZA65_RS05630	0.53	-0.1
1,157,686	-		DZA65_RS05630	0.53	-0.3
1,157,686	-		DZA65_RS05630	0.53	-1.1
1,157,686	-		DZA65_RS05630	0.53	+0.4
1,157,705	+		DZA65_RS05630	0.56	-1.3
1,157,706	-		DZA65_RS05630	0.56	-0.7
1,157,726	-		DZA65_RS05630	0.59	-0.3
1,157,727	+		DZA65_RS05630	0.59	+0.2
1,157,727	+		DZA65_RS05630	0.59	+1.8
1,157,728	-		DZA65_RS05630	0.59	-2.2
1,157,728	-		DZA65_RS05630	0.59	-2.3
1,157,728	-		DZA65_RS05630	0.59	+0.7
1,157,774	+		DZA65_RS05630	0.66	+0.2
1,157,774	+		DZA65_RS05630	0.66	-1.1
1,157,817	-		DZA65_RS05630	0.73	-0.6
1,157,828	-		DZA65_RS05630	0.74	-0.6
1,157,856	-		DZA65_RS05630	0.79	-2.2
1,157,870	-		DZA65_RS05630	0.81	+0.0
1,157,876	+		DZA65_RS05630	0.82	+1.2
1,157,876	+		DZA65_RS05630	0.82	+0.2
1,157,923	+		DZA65_RS05630	0.89	-0.4
1,157,923	+		DZA65_RS05630	0.89	+0.1
1,157,923	+		DZA65_RS05630	0.89	-0.9
1,157,924	-		DZA65_RS05630	0.89	+0.1
1,157,966	+				+3.0
1,157,998	+				-0.3
1,158,004	-				-0.1
1,158,022	+				+0.8
1,158,036	+				+0.8
1,158,037	-				-0.3
1,158,037	-				-0.9
1,158,037	-				+0.3
1,158,102	+				-1.7
1,158,102	+				+0.1
1,158,102	+				-0.3
1,158,102	+				+3.0
1,158,102	+				-0.6
1,158,102	+				-0.9
1,158,103	-				-1.3
1,158,103	-				-2.2
1,158,103	-				+0.1
1,158,103	-				+0.5
1,158,103	-				-2.2
1,158,103	-				-0.7
1,158,103	-				-0.8
1,158,212	+		DZA65_RS05635	0.17	-0.9
1,158,213	-		DZA65_RS05635	0.17	-2.2
1,158,227	+		DZA65_RS05635	0.19	-1.1
1,158,227	+		DZA65_RS05635	0.19	+0.1
1,158,267	+		DZA65_RS05635	0.22	+2.2
1,158,267	+		DZA65_RS05635	0.22	+1.5
1,158,281	+		DZA65_RS05635	0.23	-0.0
1,158,305	-		DZA65_RS05635	0.25	+1.1
1,158,333	+		DZA65_RS05635	0.27	+0.5
1,158,397	+		DZA65_RS05635	0.33	-0.2
1,158,398	-		DZA65_RS05635	0.33	+1.1
1,158,398	-		DZA65_RS05635	0.33	+1.3
1,158,492	+		DZA65_RS05635	0.40	+1.0
1,158,493	-		DZA65_RS05635	0.41	+0.2
1,158,504	+		DZA65_RS05635	0.41	-0.9
1,158,504	+		DZA65_RS05635	0.41	-0.7
1,158,504	+		DZA65_RS05635	0.41	+0.2
1,158,504	+		DZA65_RS05635	0.41	-0.7
1,158,504	+		DZA65_RS05635	0.41	-0.5
1,158,504	+		DZA65_RS05635	0.41	-0.8
1,158,504	+		DZA65_RS05635	0.41	+1.2
1,158,504	+		DZA65_RS05635	0.41	-0.5
1,158,504	+		DZA65_RS05635	0.41	+0.9
1,158,504	+		DZA65_RS05635	0.41	-0.3
1,158,505	-		DZA65_RS05635	0.42	-2.2
1,158,505	-		DZA65_RS05635	0.42	+0.2
1,158,505	-		DZA65_RS05635	0.42	+1.1
1,158,505	-		DZA65_RS05635	0.42	-1.2
1,158,505	-		DZA65_RS05635	0.42	-1.9
1,158,505	-		DZA65_RS05635	0.42	-0.3
1,158,505	-		DZA65_RS05635	0.42	+0.5
1,158,505	-		DZA65_RS05635	0.42	-1.9
1,158,505	-		DZA65_RS05635	0.42	+0.9
1,158,507	+		DZA65_RS05635	0.42	+2.5
1,158,507	+		DZA65_RS05635	0.42	-1.1
1,158,507	+		DZA65_RS05635	0.42	+0.3
1,158,507	+		DZA65_RS05635	0.42	+0.5
1,158,507	+		DZA65_RS05635	0.42	+0.4
1,158,507	+		DZA65_RS05635	0.42	+0.9
1,158,508	-		DZA65_RS05635	0.42	+0.3
1,158,508	-		DZA65_RS05635	0.42	-0.1
1,158,508	-		DZA65_RS05635	0.42	-3.3
1,158,508	-		DZA65_RS05635	0.42	-0.9
1,158,508	-		DZA65_RS05635	0.42	+0.8
1,158,508	-		DZA65_RS05635	0.42	+1.1
1,158,508	-		DZA65_RS05635	0.42	+0.4
1,158,508	-		DZA65_RS05635	0.42	-0.7
1,158,508	-		DZA65_RS05635	0.42	-0.8
1,158,508	-				+0.7
1,158,508	-		DZA65_RS05635	0.42	-0.6
1,158,508	-		DZA65_RS05635	0.42	+0.3
1,158,508	-		DZA65_RS05635	0.42	-0.3
1,158,527	+		DZA65_RS05635	0.43	-0.3
1,158,527	+		DZA65_RS05635	0.43	-0.2
1,158,527	+		DZA65_RS05635	0.43	-0.5
1,158,557	-		DZA65_RS05635	0.46	-0.7
1,158,651	+		DZA65_RS05635	0.54	-1.3
1,158,651	+				-0.9
1,158,652	-		DZA65_RS05635	0.54	-0.6
1,158,652	-		DZA65_RS05635	0.54	+0.7
1,158,667	+		DZA65_RS05635	0.55	+0.7
1,158,668	-		DZA65_RS05635	0.55	-0.2
1,158,742	+		DZA65_RS05635	0.61	+0.3
1,158,742	+		DZA65_RS05635	0.61	+1.5
1,158,742	+		DZA65_RS05635	0.61	-2.5
1,158,743	-		DZA65_RS05635	0.61	+0.9
1,158,743	-		DZA65_RS05635	0.61	+0.4
1,158,743	-		DZA65_RS05635	0.61	-0.7
1,158,743	-		DZA65_RS05635	0.61	+0.1
1,158,752	+		DZA65_RS05635	0.62	-1.3
1,158,752	+		DZA65_RS05635	0.62	+0.8
1,158,752	+		DZA65_RS05635	0.62	+1.7
1,158,752	+		DZA65_RS05635	0.62	-1.2
1,158,753	-		DZA65_RS05635	0.62	-1.7
1,158,753	-		DZA65_RS05635	0.62	-0.6
1,158,753	-		DZA65_RS05635	0.62	+1.1
1,158,753	-		DZA65_RS05635	0.62	+1.3
1,158,754	+		DZA65_RS05635	0.62	+0.2
1,158,754	+		DZA65_RS05635	0.62	+1.0
1,158,755	-		DZA65_RS05635	0.62	-1.3
1,158,755	-		DZA65_RS05635	0.62	+1.2
1,158,758	-		DZA65_RS05635	0.62	+0.2
1,158,794	+		DZA65_RS05635	0.65	-0.3
1,158,830	-		DZA65_RS05635	0.68	-0.3
1,158,848	+		DZA65_RS05635	0.70	-0.3
1,158,848	+		DZA65_RS05635	0.70	+0.1
1,158,849	-		DZA65_RS05635	0.70	-0.7
1,158,849	-		DZA65_RS05635	0.70	-0.6
1,158,884	+		DZA65_RS05635	0.73	+1.0
1,158,885	-		DZA65_RS05635	0.73	-0.3
1,158,934	+		DZA65_RS05635	0.77	+0.9
1,158,935	-		DZA65_RS05635	0.77	+2.2
1,158,935	-		DZA65_RS05635	0.77	+2.0
1,158,969	+		DZA65_RS05635	0.80	-1.6
1,158,969	+		DZA65_RS05635	0.80	-2.8
1,158,969	+		DZA65_RS05635	0.80	+0.3
1,158,970	-		DZA65_RS05635	0.80	-1.3
1,159,010	-		DZA65_RS05635	0.83	+0.2
1,159,010	-		DZA65_RS05635	0.83	+0.7
1,159,010	-		DZA65_RS05635	0.83	-0.8
1,159,010	-		DZA65_RS05635	0.83	+1.5
1,159,035	-		DZA65_RS05635	0.85	+3.0
1,159,035	-		DZA65_RS05635	0.85	-0.3
1,159,035	-		DZA65_RS05635	0.85	+1.3
1,159,089	-		DZA65_RS05635	0.90	-2.5
1,159,089	-		DZA65_RS05635	0.90	-0.2
1,159,093	+				+0.4
1,159,094	-				+0.0
1,159,097	-				-0.1
1,159,115	+				-0.3
1,159,127	-				-0.4
1,159,148	+				+2.0
1,159,160	+				-0.2
1,159,163	+				-0.3
1,159,163	+				-0.7
1,159,163	+				-1.2
1,159,164	-				-1.7
1,159,164	-				+0.7
1,159,164	-				+0.0
1,159,164	-				-0.9
1,159,270	-				-0.7
1,159,275	+				+1.2
1,159,275	+				-0.1
1,159,314	-				+0.3
1,159,351	+				-0.8
1,159,352	-				+0.4
1,159,384	-				-0.7
1,159,384	-				-0.9
1,159,387	+				+0.8
1,159,387	+				+0.7
1,159,387	+				-0.4
1,159,387	+				+0.8
1,159,388	-				+1.4
1,159,388	-				-1.3
1,159,388	-				-0.3
1,159,388	-				-0.5
1,159,388	-				-0.5
1,159,407	-				+0.2
1,159,417	-				+1.0
1,159,429	+				+1.2
1,159,430	-				-0.5
1,159,480	+				+0.3
1,159,480	+				-1.9
1,159,480	+				-1.3
1,159,480	+				-2.2
1,159,481	-				-0.9
1,159,507	+				-0.5
1,159,507	+				-2.2
1,159,507	+				+0.1
1,159,507	+				+1.0
1,159,508	-				+0.7
1,159,508	-				+0.7
1,159,536	-		DZA65_RS05640	0.11	-1.3
1,159,536	-		DZA65_RS05640	0.11	+0.1
1,159,536	-		DZA65_RS05640	0.11	+2.2
1,159,536	-		DZA65_RS05640	0.11	+1.4
1,159,536	-		DZA65_RS05640	0.11	-0.6
1,159,546	+		DZA65_RS05640	0.11	+0.7
1,159,546	+		DZA65_RS05640	0.11	-2.5
1,159,546	+		DZA65_RS05640	0.11	+0.7
1,159,547	-		DZA65_RS05640	0.11	-0.9
1,159,547	-		DZA65_RS05640	0.11	+0.1
1,159,583	-		DZA65_RS05640	0.12	+0.9
1,159,621	+		DZA65_RS05640	0.14	-0.5
1,159,622	-		DZA65_RS05640	0.14	+0.7
1,159,622	-		DZA65_RS05640	0.14	-1.2
1,159,635	+		DZA65_RS05640	0.14	-1.8
1,159,636	-		DZA65_RS05640	0.14	-0.8
1,159,636	-		DZA65_RS05640	0.14	+0.3
1,159,636	-		DZA65_RS05640	0.14	+0.6
1,159,636	-		DZA65_RS05640	0.14	-0.1
1,159,636	-		DZA65_RS05640	0.14	-1.3
1,159,636	-		DZA65_RS05640	0.14	-0.9
1,159,681	+		DZA65_RS05640	0.16	+0.4
1,159,724	-		DZA65_RS05640	0.17	+0.7
1,159,724	-		DZA65_RS05640	0.17	+2.5
1,159,805	+		DZA65_RS05640	0.20	-0.6
1,159,805	+		DZA65_RS05640	0.20	-0.1
1,159,805	+		DZA65_RS05640	0.20	-1.9
1,159,805	+		DZA65_RS05640	0.20	+0.1
1,159,805	+		DZA65_RS05640	0.20	-0.5
1,159,805	+		DZA65_RS05640	0.20	+3.0
1,159,805	+		DZA65_RS05640	0.20	-0.3
1,159,806	-		DZA65_RS05640	0.20	+0.7
1,159,806	-		DZA65_RS05640	0.20	+1.1
1,159,806	-		DZA65_RS05640	0.20	-0.4
1,159,806	-		DZA65_RS05640	0.20	+0.2
1,159,806	-		DZA65_RS05640	0.20	+0.0
1,159,806	-		DZA65_RS05640	0.20	+0.1
1,159,806	-		DZA65_RS05640	0.20	+0.1
1,159,806	-		DZA65_RS05640	0.20	-1.1
1,159,806	-		DZA65_RS05640	0.20	-1.5
1,159,806	-		DZA65_RS05640	0.20	+0.1
1,159,806	-		DZA65_RS05640	0.20	-1.9
1,159,806	-		DZA65_RS05640	0.20	+0.2
1,159,809	+		DZA65_RS05640	0.20	-1.3
1,159,809	+		DZA65_RS05640	0.20	-1.6
1,159,809	+		DZA65_RS05640	0.20	-1.1
1,159,809	+		DZA65_RS05640	0.20	-0.0
1,159,809	+		DZA65_RS05640	0.20	+0.7
1,159,810	-		DZA65_RS05640	0.20	+0.7
1,159,810	-		DZA65_RS05640	0.20	+0.2
1,159,810	-		DZA65_RS05640	0.20	+0.2
1,159,810	-		DZA65_RS05640	0.20	-2.2
1,159,832	+		DZA65_RS05640	0.21	-0.9
1,159,833	-		DZA65_RS05640	0.21	+0.1
1,159,833	-		DZA65_RS05640	0.21	-0.6
1,159,946	-		DZA65_RS05640	0.24	-0.8
1,159,961	-		DZA65_RS05640	0.25	+1.7
1,160,026	+		DZA65_RS05640	0.27	+1.2
1,160,049	+		DZA65_RS05640	0.28	-1.0
1,160,050	-		DZA65_RS05640	0.28	+1.6
1,160,117	+		DZA65_RS05640	0.30	+0.2
1,160,117	+		DZA65_RS05640	0.30	+0.7
1,160,118	-		DZA65_RS05640	0.30	+1.1
1,160,132	+		DZA65_RS05640	0.31	-2.2
1,160,132	+		DZA65_RS05640	0.31	+1.7
1,160,133	-		DZA65_RS05640	0.31	+2.4
1,160,143	-		DZA65_RS05640	0.31	-1.7
1,160,143	-		DZA65_RS05640	0.31	+0.6