Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05415

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,112,983	-		DZA65_RS05410	0.50	-0.4
1,112,983	-		DZA65_RS05410	0.50	-0.8
1,113,035	+		DZA65_RS05410	0.54	-0.7
1,113,036	-		DZA65_RS05410	0.54	-0.2
1,113,141	+		DZA65_RS05410	0.61	-2.1
1,113,142	-		DZA65_RS05410	0.61	+0.5
1,113,142	-		DZA65_RS05410	0.61	-1.0
1,113,172	+		DZA65_RS05410	0.64	-0.8
1,113,172	+		DZA65_RS05410	0.64	+0.7
1,113,172	+		DZA65_RS05410	0.64	+2.7
1,113,172	+		DZA65_RS05410	0.64	-0.0
1,113,173	-		DZA65_RS05410	0.64	-0.7
1,113,178	+				-0.7
1,113,178	+		DZA65_RS05410	0.64	-0.3
1,113,336	+		DZA65_RS05410	0.76	-0.6
1,113,336	+		DZA65_RS05410	0.76	+0.0
1,113,337	-		DZA65_RS05410	0.76	-0.2
1,113,337	-		DZA65_RS05410	0.76	+0.9
1,113,369	+		DZA65_RS05410	0.78	+0.7
1,113,370	-		DZA65_RS05410	0.78	-0.3
1,113,631	-				+0.3
1,113,631	-				+0.7
1,113,631	-				+0.2
1,113,638	+				+0.1
1,113,638	+				+0.3
1,113,656	+				+0.1
1,113,656	+				-0.2
1,113,656	+				+0.7
1,113,656	+				+0.1
1,113,656	+				-0.2
1,113,656	+				-1.0
1,113,656	+				-1.1
1,113,656	+				-0.1
1,113,657	-				-0.3
1,113,657	-				-0.7
1,113,657	-				-0.5
1,113,657	-				+0.8
1,113,657	-				-0.6
1,113,668	+				-0.0
1,113,668	+				+2.3
1,113,668	+				-0.7
1,113,668	+				-0.3
1,113,668	+				+0.0
1,113,668	+				-1.3
1,113,668	+				+0.5
1,113,668	+				+0.1
1,113,668	+				+0.9
1,113,669	-				+1.4
1,113,669	-				-0.4
1,113,669	-				-0.9
1,113,669	-				+1.0
1,113,669	-				+0.7
1,113,671	+				+1.2
1,113,671	+				+1.6
1,113,672	-				+1.2
1,113,672	-				+3.3
1,113,748	+				-0.2
1,113,748	+				-0.8
1,113,748	+				-2.5
1,113,749	-				-0.4
1,113,758	+				-0.3
1,113,759	-				-1.1
1,113,759	-				-1.3
1,113,759	-				+0.8
1,113,772	-				+0.1
1,113,783	+				-0.3
1,113,783	+				-0.1
1,113,784	-				-0.3
1,113,784	-				-2.3
1,113,805	-				-0.3
1,113,819	-				+1.2
1,113,850	+				+0.1
1,113,850	+				-2.1
1,113,850	+				+0.4
1,113,851	-				-0.1
1,113,851	-				-1.1
1,113,851	-				-0.9
1,113,851	-				+1.8
1,113,871	+				-0.7
1,113,872	-				+0.1
1,113,873	+				+0.7
1,113,873	+				-0.2
1,113,873	+				+0.7
1,113,873	+				-0.5
1,113,873	+				+0.8
1,113,874	-				-1.8
1,113,874	-				+0.5
1,113,874	-				-0.6
1,113,874	-				+0.7
1,113,874	-				+1.7
1,113,883	-				-0.2
1,113,891	+				+0.3
1,113,891	+				-0.0
1,113,891	+				+0.1
1,113,892	-				-1.9
1,113,892	-				-0.3
1,113,892	-				-0.9
1,113,942	+				+0.4
1,113,942	+				+0.9
1,113,943	-				+0.9
1,113,943	-				+0.1
1,113,974	+				+3.0
1,113,974	+				+0.1
1,113,974	+				+0.7
1,113,975	-				+1.8
1,113,975	-				-1.0
1,113,984	+		DZA65_RS05415	0.10	-1.6
1,113,984	+		DZA65_RS05415	0.10	-1.2
1,113,985	-		DZA65_RS05415	0.10	-0.2
1,113,985	-		DZA65_RS05415	0.10	-0.0
1,114,028	+		DZA65_RS05415	0.18	+1.5
1,114,028	+		DZA65_RS05415	0.18	-0.9
1,114,029	-		DZA65_RS05415	0.18	-0.8
1,114,029	-		DZA65_RS05415	0.18	-1.3
1,114,074	+		DZA65_RS05415	0.26	-0.7
1,114,074	+		DZA65_RS05415	0.26	-1.5
1,114,074	+		DZA65_RS05415	0.26	+0.3
1,114,075	-		DZA65_RS05415	0.27	+1.4
1,114,075	-		DZA65_RS05415	0.27	-0.7
1,114,075	-		DZA65_RS05415	0.27	-1.9
1,114,075	-		DZA65_RS05415	0.27	-0.9
1,114,075	-		DZA65_RS05415	0.27	-0.3
1,114,256	-		DZA65_RS05415	0.60	+0.1
1,114,306	-		DZA65_RS05415	0.69	-0.3
1,114,318	+		DZA65_RS05415	0.71	+1.3
1,114,318	+		DZA65_RS05415	0.71	-0.2
1,114,318	+		DZA65_RS05415	0.71	+1.7
1,114,318	+		DZA65_RS05415	0.71	-0.8
1,114,318	+		DZA65_RS05415	0.71	-2.5
1,114,318	+		DZA65_RS05415	0.71	+0.2
1,114,318	+		DZA65_RS05415	0.71	-0.3
1,114,318	+		DZA65_RS05415	0.71	-1.1
1,114,319	-		DZA65_RS05415	0.71	+0.2
1,114,319	-		DZA65_RS05415	0.71	-0.6
1,114,319	-		DZA65_RS05415	0.71	-1.0
1,114,319	-		DZA65_RS05415	0.71	-0.8
1,114,319	-		DZA65_RS05415	0.71	-2.3
1,114,319	-		DZA65_RS05415	0.71	-0.4
1,114,319	-		DZA65_RS05415	0.71	+1.7
1,114,319	-		DZA65_RS05415	0.71	-0.7
1,114,319	-		DZA65_RS05415	0.71	-1.2
1,114,319	-		DZA65_RS05415	0.71	+0.5
1,114,319	-		DZA65_RS05415	0.71	-1.2
1,114,319	-		DZA65_RS05415	0.71	+0.0
1,114,319	-		DZA65_RS05415	0.71	-0.7
1,114,319	-		DZA65_RS05415	0.71	-1.7
1,114,323	+		DZA65_RS05415	0.72	+0.2
1,114,323	+		DZA65_RS05415	0.72	+0.6
1,114,324	-		DZA65_RS05415	0.72	+0.1
1,114,454	-				-1.7
1,114,454	-				-0.9
1,114,475	+				+0.5
1,114,489	+				-0.8
1,114,489	+				+0.1
1,114,489	+				+0.1
1,114,551	+				-0.8
1,114,568	+				+1.4
1,114,568	+				+0.1
1,114,569	-				-0.1
1,114,569	-				-0.6
1,114,598	+				-0.7
1,114,631	+				+0.3
1,114,635	+				-0.5
1,114,643	+				-1.1
1,114,673	+				+0.3
1,114,682	-				+0.9
1,114,719	+				+0.7
1,114,719	+				+2.0
1,114,720	-				+0.3
1,114,720	-				-0.6
1,114,720	-				-0.2
1,114,722	+				+1.8
1,114,722	+				+1.0
1,114,723	-				+0.1
1,114,723	-				+0.6
1,114,729	+				+1.5
1,114,730	-				-0.1
1,114,730	-				-0.9
1,114,730	-				-1.1
1,114,760	+				+1.7
1,114,760	+				-0.7
1,114,760	+				-1.3
1,114,761	-				-1.3
1,114,801	-				+0.2
1,114,801	-				+0.2
1,114,802	+				+0.7
1,114,802	+				-1.2
1,114,829	+				+0.3
1,114,915	+				+0.4
1,114,915	+				+0.4
1,114,915	+				-0.3
1,114,915	+				+1.0
1,114,915	+				+0.3
1,114,915	+				+0.7
1,114,915	+				+0.2
1,114,915	+				+1.1
1,114,916	-				+0.2
1,114,916	-				+1.2
1,114,916	-				-1.9
1,115,023	-				-0.1
1,115,045	+				-0.2
1,115,045	+				+0.3
1,115,045	+				-0.7
1,115,083	+				-0.9
1,115,084	-				+0.4
1,115,084	-				-0.1
1,115,084	-				+1.0
1,115,099	+				-0.9
1,115,100	-				+0.3
1,115,116	-				+0.3
1,115,133	+				+0.4
1,115,134	-				+0.7
1,115,134	-				+0.9
1,115,139	-				-0.7
1,115,139	-				+0.7
1,115,187	+				-0.7
1,115,187	+				-0.7
1,115,187	+				-2.5
1,115,187	+				-2.5
1,115,188	-				-0.3
1,115,188	-				+0.4
1,115,188	-				+0.7
1,115,188	-				+0.4
1,115,188	-				+1.2
1,115,239	-				+1.2
1,115,313	+		DZA65_RS05420	0.26	+1.2
1,115,314	-		DZA65_RS05420	0.26	-0.3
1,115,391	+		DZA65_RS05420	0.50	-1.1
1,115,404	+		DZA65_RS05420	0.54	+0.9
1,115,404	+		DZA65_RS05420	0.54	+1.1
1,115,404	+		DZA65_RS05420	0.54	+1.2
1,115,405	-		DZA65_RS05420	0.54	+1.0
1,115,405	-		DZA65_RS05420	0.54	+0.1
1,115,405	-		DZA65_RS05420	0.54	+0.0
1,115,405	-		DZA65_RS05420	0.54	-1.3
1,115,463	-		DZA65_RS05420	0.72	-0.6