Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04770 and DZA65_RS04775 are separated by 39 nucleotides DZA65_RS04775 and DZA65_RS04780 are separated by 399 nucleotides DZA65_RS04780 and DZA65_RS04785 overlap by 4 nucleotides
DZA65_RS04770: DZA65_RS04770 - type I restriction-modification system subunit M, at 990,504 to 992,939
_RS04770
DZA65_RS04775: DZA65_RS04775 - hypothetical protein, at 992,979 to 993,218
_RS04775
DZA65_RS04780: DZA65_RS04780 - hypothetical protein, at 993,618 to 994,079
_RS04780
DZA65_RS04785: DZA65_RS04785 - transcriptional regulator, at 994,076 to 994,297
_RS04785
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 992.714 kb on + strand at 992.750 kb on + strand at 992.750 kb on + strand at 992.751 kb on - strand at 992.751 kb on - strand at 992.751 kb on - strand at 992.787 kb on - strand at 992.792 kb on - strand at 992.805 kb on - strand at 992.806 kb on + strand at 992.807 kb on - strand at 992.811 kb on - strand at 992.821 kb on + strand at 992.821 kb on + strand at 992.822 kb on - strand at 992.822 kb on - strand at 992.822 kb on - strand at 992.829 kb on - strand at 992.844 kb on + strand at 992.844 kb on + strand at 992.844 kb on + strand at 992.844 kb on + strand at 992.844 kb on + strand at 992.844 kb on + strand at 992.845 kb on - strand at 992.845 kb on - strand at 992.845 kb on - strand at 992.845 kb on - strand at 992.845 kb on - strand at 992.848 kb on + strand at 992.849 kb on - strand at 992.849 kb on - strand at 992.849 kb on - strand at 992.849 kb on - strand at 992.858 kb on - strand at 992.914 kb on + strand at 992.915 kb on - strand at 992.933 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.945 kb on - strand at 992.980 kb on + strand at 992.980 kb on + strand at 992.981 kb on - strand at 993.024 kb on + strand, within DZA65_RS04775 at 993.024 kb on + strand, within DZA65_RS04775 at 993.025 kb on - strand, within DZA65_RS04775 at 993.025 kb on - strand, within DZA65_RS04775 at 993.099 kb on - strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.101 kb on + strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.102 kb on - strand, within DZA65_RS04775 at 993.121 kb on + strand, within DZA65_RS04775 at 993.121 kb on + strand, within DZA65_RS04775 at 993.122 kb on - strand, within DZA65_RS04775 at 993.122 kb on - strand, within DZA65_RS04775 at 993.154 kb on + strand, within DZA65_RS04775 at 993.155 kb on - strand, within DZA65_RS04775 at 993.155 kb on - strand, within DZA65_RS04775 at 993.155 kb on - strand, within DZA65_RS04775 at 993.155 kb on - strand, within DZA65_RS04775 at 993.155 kb on - strand, within DZA65_RS04775 at 993.188 kb on + strand, within DZA65_RS04775 at 993.191 kb on + strand, within DZA65_RS04775 at 993.191 kb on + strand, within DZA65_RS04775 at 993.191 kb on + strand, within DZA65_RS04775 at 993.192 kb on - strand, within DZA65_RS04775 at 993.199 kb on + strand at 993.199 kb on + strand at 993.199 kb on + strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.200 kb on - strand at 993.218 kb on + strand at 993.218 kb on + strand at 993.218 kb on + strand at 993.218 kb on + strand at 993.218 kb on + strand at 993.218 kb on + strand at 993.219 kb on - strand at 993.219 kb on - strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.221 kb on + strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.222 kb on - strand at 993.231 kb on - strand at 993.234 kb on - strand at 993.234 kb on - strand at 993.234 kb on - strand at 993.234 kb on - strand at 993.234 kb on - strand at 993.245 kb on + strand at 993.264 kb on - strand at 993.279 kb on + strand at 993.279 kb on + strand at 993.279 kb on + strand at 993.307 kb on - strand at 993.331 kb on + strand at 993.331 kb on + strand at 993.331 kb on + strand at 993.349 kb on + strand at 993.365 kb on + strand at 993.365 kb on + strand at 993.366 kb on - strand at 993.366 kb on - strand at 993.414 kb on + strand at 993.414 kb on + strand at 993.415 kb on - strand at 993.416 kb on + strand at 993.416 kb on + strand at 993.417 kb on - strand at 993.417 kb on - strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.473 kb on + strand at 993.473 kb on + strand at 993.473 kb on + strand at 993.474 kb on - strand at 993.474 kb on - strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.477 kb on + strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.478 kb on - strand at 993.506 kb on + strand at 993.506 kb on + strand at 993.506 kb on + strand at 993.507 kb on - strand at 993.507 kb on - strand at 993.565 kb on + strand at 993.618 kb on - strand at 993.618 kb on - strand at 993.727 kb on + strand, within DZA65_RS04780 at 993.728 kb on - strand, within DZA65_RS04780 at 993.728 kb on - strand, within DZA65_RS04780 at 993.728 kb on - strand, within DZA65_RS04780 at 993.728 kb on - strand at 993.728 kb on - strand, within DZA65_RS04780 at 993.851 kb on + strand, within DZA65_RS04780 at 993.979 kb on + strand, within DZA65_RS04780 at 993.979 kb on + strand, within DZA65_RS04780 at 993.979 kb on + strand, within DZA65_RS04780 at 993.979 kb on + strand, within DZA65_RS04780 at 993.979 kb on + strand, within DZA65_RS04780 at 993.979 kb on + strand, within DZA65_RS04780 at 993.979 kb on + strand, within DZA65_RS04780 at 993.980 kb on - strand, within DZA65_RS04780 at 993.980 kb on - strand, within DZA65_RS04780 at 993.982 kb on + strand, within DZA65_RS04780 at 993.982 kb on + strand, within DZA65_RS04780 at 993.999 kb on + strand, within DZA65_RS04780 at 993.999 kb on + strand, within DZA65_RS04780 at 994.000 kb on - strand, within DZA65_RS04780 at 994.000 kb on - strand, within DZA65_RS04780 at 994.033 kb on + strand at 994.034 kb on - strand at 994.034 kb on - strand at 994.034 kb on - strand at 994.034 kb on - strand at 994.034 kb on - strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.038 kb on - strand at 994.038 kb on - strand at 994.038 kb on - strand at 994.038 kb on - strand at 994.058 kb on + strand at 994.058 kb on + strand at 994.058 kb on + strand at 994.058 kb on + strand at 994.058 kb on + strand at 994.058 kb on + strand at 994.059 kb on - strand at 994.059 kb on - strand at 994.059 kb on - strand at 994.059 kb on - strand at 994.059 kb on - strand at 994.059 kb on - strand at 994.061 kb on + strand at 994.062 kb on - strand at 994.062 kb on - strand at 994.108 kb on + strand, within DZA65_RS04785 at 994.109 kb on - strand, within DZA65_RS04785 at 994.109 kb on - strand, within DZA65_RS04785 at 994.300 kb on + strand at 994.300 kb on + strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.331 kb on + strand at 994.332 kb on - strand at 994.332 kb on - strand at 994.376 kb on + strand at 994.426 kb on - strand at 994.438 kb on + strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.449 kb on - strand at 994.497 kb on - strand at 994.497 kb on - strand at 994.549 kb on + strand at 994.549 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.666 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.800 kb on + strand at 994.800 kb on + strand at 994.801 kb on - strand at 994.801 kb on - strand at 994.801 kb on - strand at 995.013 kb on - strand at 995.013 kb on - strand at 995.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 992,714 + +0.1 992,750 + +0.3 992,750 + -0.3 992,751 - -0.4 992,751 - +1.1 992,751 - -1.0 992,787 - +0.1 992,792 - -1.1 992,805 - -1.1 992,806 + +2.0 992,807 - -3.1 992,811 - -0.7 992,821 + +1.5 992,821 + -0.2 992,822 - +1.1 992,822 - +1.1 992,822 - +0.2 992,829 - -0.8 992,844 + +1.1 992,844 + -1.9 992,844 + -2.1 992,844 + +0.1 992,844 + -0.9 992,844 + +0.7 992,845 - -0.0 992,845 - -0.0 992,845 - -0.6 992,845 - +0.6 992,845 - -0.9 992,848 + +0.0 992,849 - -0.4 992,849 - +0.7 992,849 - +2.0 992,849 - -1.3 992,858 - +2.2 992,914 + +0.1 992,915 - -0.9 992,933 + +1.0 992,944 + +0.1 992,944 + -0.1 992,944 + -1.4 992,945 - +0.1 992,980 + -0.6 992,980 + -0.9 992,981 - +0.2 993,024 + DZA65_RS04775 0.19 +0.2 993,024 + DZA65_RS04775 0.19 -1.0 993,025 - DZA65_RS04775 0.19 +2.7 993,025 - DZA65_RS04775 0.19 -0.3 993,099 - DZA65_RS04775 0.50 -0.4 993,101 + DZA65_RS04775 0.51 +1.3 993,101 + DZA65_RS04775 0.51 -1.0 993,101 + DZA65_RS04775 0.51 +0.5 993,101 + DZA65_RS04775 0.51 -1.6 993,101 + DZA65_RS04775 0.51 -0.5 993,101 + DZA65_RS04775 0.51 +0.7 993,101 + DZA65_RS04775 0.51 -0.6 993,101 + DZA65_RS04775 0.51 +1.4 993,101 + DZA65_RS04775 0.51 +0.9 993,102 - DZA65_RS04775 0.51 -0.9 993,102 - DZA65_RS04775 0.51 +0.3 993,102 - DZA65_RS04775 0.51 -0.3 993,102 - DZA65_RS04775 0.51 -0.9 993,102 - DZA65_RS04775 0.51 -0.5 993,102 - DZA65_RS04775 0.51 +0.3 993,102 - DZA65_RS04775 0.51 +1.4 993,102 - DZA65_RS04775 0.51 -0.6 993,102 - DZA65_RS04775 0.51 -0.0 993,121 + DZA65_RS04775 0.59 -0.5 993,121 + DZA65_RS04775 0.59 +1.3 993,122 - DZA65_RS04775 0.60 +0.4 993,122 - DZA65_RS04775 0.60 -0.4 993,154 + DZA65_RS04775 0.73 -2.5 993,155 - DZA65_RS04775 0.73 -1.9 993,155 - DZA65_RS04775 0.73 -1.0 993,155 - DZA65_RS04775 0.73 -0.4 993,155 - DZA65_RS04775 0.73 +0.3 993,155 - DZA65_RS04775 0.73 +0.7 993,188 + DZA65_RS04775 0.87 +0.7 993,191 + DZA65_RS04775 0.88 -2.0 993,191 + DZA65_RS04775 0.88 +0.5 993,191 + DZA65_RS04775 0.88 +1.3 993,192 - DZA65_RS04775 0.89 -0.2 993,199 + +0.7 993,199 + -0.7 993,199 + -0.0 993,200 - -0.5 993,200 - -1.3 993,200 - +0.1 993,200 - -1.1 993,200 - -0.4 993,200 - -0.0 993,200 - +0.1 993,200 - -1.1 993,200 - -0.3 993,218 + -1.9 993,218 + +0.0 993,218 + -0.9 993,218 + -0.3 993,218 + -0.6 993,218 + +1.9 993,219 - -0.9 993,219 - -0.5 993,221 + +0.5 993,221 + -0.5 993,221 + -0.3 993,221 + +1.4 993,221 + -2.5 993,221 + +0.3 993,221 + +1.1 993,221 + -0.0 993,221 + -0.4 993,222 - +0.4 993,222 - +0.7 993,222 - +1.1 993,222 - -0.9 993,222 - -0.5 993,222 - -0.5 993,222 - +1.1 993,222 - +0.1 993,222 - +1.1 993,222 - -1.3 993,222 - +0.4 993,222 - -0.1 993,222 - -0.3 993,222 - -1.3 993,222 - +0.7 993,222 - -0.5 993,231 - -1.3 993,234 - +1.5 993,234 - +2.2 993,234 - -1.6 993,234 - +0.5 993,234 - -0.1 993,245 + -1.6 993,264 - -0.3 993,279 + +0.3 993,279 + +1.0 993,279 + -1.9 993,307 - -0.3 993,331 + +1.0 993,331 + -0.3 993,331 + +0.3 993,349 + -1.0 993,365 + +0.4 993,365 + -0.4 993,366 - -0.3 993,366 - +1.6 993,414 + +0.2 993,414 + +0.2 993,415 - +1.4 993,416 + +1.3 993,416 + +0.2 993,417 - -1.6 993,417 - -0.1 993,432 + -1.4 993,432 + +1.0 993,432 + -0.1 993,432 + +0.4 993,432 + -0.3 993,432 + -0.1 993,433 - -1.3 993,433 - +0.4 993,433 - -1.6 993,433 - +0.2 993,433 - -2.1 993,473 + -0.9 993,473 + -0.3 993,473 + +0.3 993,474 - +0.2 993,474 - +0.3 993,477 + -0.0 993,477 + +3.2 993,477 + -0.0 993,477 + -2.9 993,477 + +0.1 993,477 + +0.7 993,477 + -1.0 993,477 + -0.3 993,477 + +0.5 993,477 + -1.4 993,477 + -1.0 993,478 - -0.6 993,478 - -2.1 993,478 - +0.7 993,478 - -0.9 993,478 - +1.1 993,478 - +0.8 993,478 - +1.7 993,478 - +1.9 993,478 - -0.3 993,478 - +1.0 993,478 - -2.4 993,478 - -0.9 993,478 - +0.5 993,478 - -0.3 993,478 - +0.1 993,478 - +1.2 993,478 - +0.5 993,506 + -1.5 993,506 + +3.0 993,506 + +0.4 993,507 - -1.0 993,507 - +1.4 993,565 + -1.6 993,618 - -0.3 993,618 - -0.2 993,727 + DZA65_RS04780 0.24 +0.4 993,728 - DZA65_RS04780 0.24 +0.7 993,728 - DZA65_RS04780 0.24 -1.0 993,728 - DZA65_RS04780 0.24 -0.9 993,728 - -0.3 993,728 - DZA65_RS04780 0.24 +0.7 993,851 + DZA65_RS04780 0.50 +1.0 993,979 + DZA65_RS04780 0.78 -0.1 993,979 + DZA65_RS04780 0.78 +2.1 993,979 + DZA65_RS04780 0.78 -0.7 993,979 + DZA65_RS04780 0.78 +4.4 993,979 + DZA65_RS04780 0.78 +1.5 993,979 + DZA65_RS04780 0.78 +1.0 993,979 + DZA65_RS04780 0.78 +1.0 993,980 - DZA65_RS04780 0.78 -1.3 993,980 - DZA65_RS04780 0.78 +0.6 993,982 + DZA65_RS04780 0.79 -0.5 993,982 + DZA65_RS04780 0.79 -0.6 993,999 + DZA65_RS04780 0.82 +0.7 993,999 + DZA65_RS04780 0.82 +5.4 994,000 - DZA65_RS04780 0.83 -1.3 994,000 - DZA65_RS04780 0.83 -0.9 994,033 + +3.0 994,034 - -0.5 994,034 - -0.3 994,034 - +0.7 994,034 - -0.3 994,034 - +0.3 994,037 + +0.5 994,037 + -0.8 994,037 + -0.7 994,037 + -1.6 994,037 + -0.2 994,037 + +0.4 994,037 + -0.5 994,037 + -1.5 994,037 + +1.5 994,037 + -0.0 994,037 + -0.7 994,037 + +1.3 994,037 + -0.3 994,037 + -0.9 994,037 + -0.2 994,038 - -0.1 994,038 - -2.5 994,038 - +1.0 994,038 - -1.3 994,058 + +0.7 994,058 + -0.0 994,058 + -1.5 994,058 + +0.0 994,058 + -0.4 994,058 + +1.3 994,059 - -0.7 994,059 - -1.3 994,059 - -1.1 994,059 - +0.3 994,059 - -0.3 994,059 - +0.7 994,061 + +0.9 994,062 - -0.6 994,062 - -1.0 994,108 + DZA65_RS04785 0.14 -0.3 994,109 - DZA65_RS04785 0.15 -0.4 994,109 - DZA65_RS04785 0.15 -0.9 994,300 + +2.7 994,300 + -1.6 994,301 - -1.2 994,301 - -1.9 994,301 - -0.9 994,301 - -0.3 994,301 - +0.4 994,301 - +0.4 994,301 - +0.4 994,331 + -1.9 994,332 - -0.3 994,332 - +0.2 994,376 + -1.0 994,426 - -0.3 994,438 + +0.2 994,439 - -0.7 994,439 - -0.5 994,439 - -2.3 994,439 - -0.6 994,439 - +0.4 994,449 - -0.2 994,497 - +0.2 994,497 - +0.3 994,549 + +0.7 994,549 + -0.0 994,559 + -0.9 994,559 + -0.2 994,559 + +1.9 994,560 - -1.7 994,560 - +0.5 994,560 - +1.0 994,560 - +1.9 994,666 - -1.6 994,766 - +0.1 994,766 - +0.7 994,766 - +0.8 994,800 + +0.1 994,800 + -1.5 994,801 - -1.1 994,801 - -0.3 994,801 - -0.1 995,013 - -0.2 995,013 - +0.4 995,057 - +1.7
Or see this region's nucleotide sequence