Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04105 and DZA65_RS04110 overlap by 4 nucleotides DZA65_RS04110 and DZA65_RS04115 are separated by 2 nucleotides DZA65_RS04115 and DZA65_RS04120 overlap by 4 nucleotides DZA65_RS04120 and DZA65_RS04125 are separated by 8 nucleotides DZA65_RS04125 and DZA65_RS04130 overlap by 14 nucleotides
DZA65_RS04105: DZA65_RS04105 - phage tail protein, at 866,246 to 866,743
_RS04105
DZA65_RS04110: DZA65_RS04110 - hypothetical protein, at 866,740 to 867,444
_RS04110
DZA65_RS04115: DZA65_RS04115 - DUF2586 domain-containing protein, at 867,447 to 868,562
_RS04115
DZA65_RS04120: DZA65_RS04120 - DUF2597 family protein, at 868,559 to 869,014
_RS04120
DZA65_RS04125: DZA65_RS04125 - holin, at 869,023 to 869,328
_RS04125
DZA65_RS04130: DZA65_RS04130 - M15 family metallopeptidase, at 869,315 to 869,656
_RS04130
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 866.466 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.783 kb on + strand at 866.783 kb on + strand at 866.783 kb on + strand at 866.783 kb on + strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.834 kb on + strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 867.016 kb on + strand, within DZA65_RS04110 at 867.017 kb on - strand, within DZA65_RS04110 at 867.021 kb on - strand, within DZA65_RS04110 at 867.021 kb on - strand at 867.021 kb on - strand, within DZA65_RS04110 at 867.076 kb on + strand, within DZA65_RS04110 at 867.076 kb on + strand, within DZA65_RS04110 at 867.275 kb on + strand, within DZA65_RS04110 at 867.275 kb on + strand, within DZA65_RS04110 at 867.276 kb on - strand, within DZA65_RS04110 at 867.285 kb on + strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.369 kb on + strand, within DZA65_RS04110 at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.528 kb on - strand at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.895 kb on + strand, within DZA65_RS04115 at 867.895 kb on + strand, within DZA65_RS04115 at 867.909 kb on - strand, within DZA65_RS04115 at 867.913 kb on + strand, within DZA65_RS04115 at 868.051 kb on + strand, within DZA65_RS04115 at 868.076 kb on - strand, within DZA65_RS04115 at 868.076 kb on - strand, within DZA65_RS04115 at 868.141 kb on - strand, within DZA65_RS04115 at 868.158 kb on + strand, within DZA65_RS04115 at 868.168 kb on - strand, within DZA65_RS04115 at 868.176 kb on + strand, within DZA65_RS04115 at 868.177 kb on - strand, within DZA65_RS04115 at 868.177 kb on - strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.222 kb on - strand, within DZA65_RS04115 at 868.316 kb on + strand, within DZA65_RS04115 at 868.317 kb on - strand, within DZA65_RS04115 at 868.317 kb on - strand, within DZA65_RS04115 at 868.347 kb on + strand, within DZA65_RS04115 at 868.348 kb on - strand, within DZA65_RS04115 at 868.480 kb on - strand at 868.480 kb on - strand at 868.493 kb on + strand at 868.494 kb on - strand at 868.497 kb on + strand at 868.497 kb on + strand at 868.497 kb on + strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.539 kb on - strand at 868.539 kb on - strand at 868.539 kb on - strand at 868.539 kb on - strand at 868.640 kb on - strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.733 kb on - strand, within DZA65_RS04120 at 868.733 kb on - strand, within DZA65_RS04120 at 868.814 kb on + strand, within DZA65_RS04120 at 868.815 kb on - strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 869.054 kb on + strand, within DZA65_RS04125 at 869.322 kb on + strand at 869.322 kb on + strand at 869.322 kb on + strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.345 kb on - strand at 869.415 kb on - strand, within DZA65_RS04130 at 869.415 kb on - strand, within DZA65_RS04130 at 869.479 kb on + strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.525 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 866,466 + DZA65_RS04105 0.44 +0.2 866,501 + DZA65_RS04105 0.51 -0.5 866,501 + DZA65_RS04105 0.51 -1.3 866,501 + DZA65_RS04105 0.51 -2.2 866,502 - DZA65_RS04105 0.51 -1.4 866,502 - DZA65_RS04105 0.51 +0.7 866,502 - DZA65_RS04105 0.51 -0.7 866,502 - DZA65_RS04105 0.51 +0.3 866,502 - DZA65_RS04105 0.51 +0.6 866,502 - DZA65_RS04105 0.51 -1.6 866,783 + +0.8 866,783 + -1.5 866,783 + -1.2 866,783 + +0.2 866,784 - -1.8 866,784 - -1.5 866,784 - +0.8 866,784 - +0.0 866,784 - -2.0 866,834 + DZA65_RS04110 0.13 -0.6 866,835 - DZA65_RS04110 0.13 +2.8 866,835 - DZA65_RS04110 0.13 -0.6 866,835 - DZA65_RS04110 0.13 -0.4 867,016 + DZA65_RS04110 0.39 +0.8 867,017 - DZA65_RS04110 0.39 -0.3 867,021 - DZA65_RS04110 0.40 +0.1 867,021 - -0.2 867,021 - DZA65_RS04110 0.40 -1.8 867,076 + DZA65_RS04110 0.48 -0.6 867,076 + DZA65_RS04110 0.48 +1.4 867,275 + DZA65_RS04110 0.76 -0.8 867,275 + DZA65_RS04110 0.76 -2.8 867,276 - DZA65_RS04110 0.76 +0.1 867,285 + DZA65_RS04110 0.77 -1.2 867,286 - DZA65_RS04110 0.77 -0.9 867,286 - DZA65_RS04110 0.77 -0.2 867,286 - DZA65_RS04110 0.77 -1.0 867,286 - DZA65_RS04110 0.77 +1.5 867,286 - DZA65_RS04110 0.77 -0.4 867,323 + DZA65_RS04110 0.83 -1.3 867,323 + DZA65_RS04110 0.83 -2.0 867,323 + DZA65_RS04110 0.83 +0.6 867,323 + DZA65_RS04110 0.83 -0.1 867,324 - DZA65_RS04110 0.83 +0.5 867,324 - DZA65_RS04110 0.83 +0.1 867,324 - DZA65_RS04110 0.83 -0.2 867,324 - DZA65_RS04110 0.83 +1.1 867,324 - DZA65_RS04110 0.83 +0.8 867,324 - DZA65_RS04110 0.83 +0.1 867,324 - DZA65_RS04110 0.83 +1.8 867,324 - DZA65_RS04110 0.83 +0.6 867,369 + DZA65_RS04110 0.89 -0.2 867,487 + +0.7 867,487 + +1.1 867,487 + +0.6 867,487 + -1.4 867,487 + +1.4 867,488 - +0.8 867,488 - -0.1 867,488 - -0.2 867,488 - -1.8 867,488 - +1.1 867,488 - -0.5 867,488 - +0.7 867,528 - -2.5 867,891 + DZA65_RS04115 0.40 +0.5 867,891 + DZA65_RS04115 0.40 +0.4 867,891 + DZA65_RS04115 0.40 -0.2 867,891 + DZA65_RS04115 0.40 -0.9 867,892 - DZA65_RS04115 0.40 -0.1 867,892 - DZA65_RS04115 0.40 -0.0 867,892 - DZA65_RS04115 0.40 +0.2 867,892 - DZA65_RS04115 0.40 +0.0 867,892 - DZA65_RS04115 0.40 +0.8 867,892 - DZA65_RS04115 0.40 -0.9 867,895 + DZA65_RS04115 0.40 -0.6 867,895 + DZA65_RS04115 0.40 -1.2 867,909 - DZA65_RS04115 0.41 -1.2 867,913 + DZA65_RS04115 0.42 -1.6 868,051 + DZA65_RS04115 0.54 +1.4 868,076 - DZA65_RS04115 0.56 +0.8 868,076 - DZA65_RS04115 0.56 -1.4 868,141 - DZA65_RS04115 0.62 -2.0 868,158 + DZA65_RS04115 0.64 +0.2 868,168 - DZA65_RS04115 0.65 +0.3 868,176 + DZA65_RS04115 0.65 -0.3 868,177 - DZA65_RS04115 0.65 -0.5 868,177 - DZA65_RS04115 0.65 -0.2 868,179 + DZA65_RS04115 0.66 -0.9 868,179 + DZA65_RS04115 0.66 -1.7 868,179 + DZA65_RS04115 0.66 -1.2 868,180 - DZA65_RS04115 0.66 -1.5 868,180 - DZA65_RS04115 0.66 +0.3 868,180 - DZA65_RS04115 0.66 -0.9 868,180 - DZA65_RS04115 0.66 +1.2 868,222 - DZA65_RS04115 0.69 -0.7 868,316 + DZA65_RS04115 0.78 +1.2 868,317 - DZA65_RS04115 0.78 +2.4 868,317 - DZA65_RS04115 0.78 -3.1 868,347 + DZA65_RS04115 0.81 +2.6 868,348 - DZA65_RS04115 0.81 -0.7 868,480 - -1.0 868,480 - -0.5 868,493 + -1.1 868,494 - +0.8 868,497 + -0.2 868,497 + +0.6 868,497 + +0.4 868,498 - -1.8 868,498 - -0.8 868,498 - +0.6 868,498 - +0.2 868,498 - -0.2 868,498 - -1.0 868,538 + -2.4 868,538 + -1.2 868,538 + -0.8 868,538 + +0.6 868,538 + +0.8 868,539 - +0.4 868,539 - -2.0 868,539 - -2.0 868,539 - +0.8 868,640 - DZA65_RS04120 0.18 +0.4 868,728 + DZA65_RS04120 0.37 +1.4 868,728 + DZA65_RS04120 0.37 +0.0 868,728 + DZA65_RS04120 0.37 -1.7 868,728 + DZA65_RS04120 0.37 -1.0 868,728 + DZA65_RS04120 0.37 +1.0 868,728 + DZA65_RS04120 0.37 -0.8 868,728 + DZA65_RS04120 0.37 -0.8 868,728 + DZA65_RS04120 0.37 +0.3 868,728 + DZA65_RS04120 0.37 -0.2 868,728 + DZA65_RS04120 0.37 -0.5 868,728 + DZA65_RS04120 0.37 +0.3 868,728 + DZA65_RS04120 0.37 -0.2 868,728 + DZA65_RS04120 0.37 +0.8 868,728 + DZA65_RS04120 0.37 +0.2 868,728 + DZA65_RS04120 0.37 +1.6 868,729 - DZA65_RS04120 0.37 +0.8 868,729 - DZA65_RS04120 0.37 +0.2 868,729 - DZA65_RS04120 0.37 -0.2 868,729 - DZA65_RS04120 0.37 +1.0 868,729 - DZA65_RS04120 0.37 -0.6 868,729 - DZA65_RS04120 0.37 +0.7 868,729 - -0.8 868,729 - DZA65_RS04120 0.37 +1.8 868,729 - DZA65_RS04120 0.37 -0.6 868,729 - DZA65_RS04120 0.37 -2.5 868,729 - DZA65_RS04120 0.37 -1.0 868,729 - DZA65_RS04120 0.37 -1.2 868,729 - DZA65_RS04120 0.37 -1.0 868,729 - DZA65_RS04120 0.37 +0.1 868,729 - DZA65_RS04120 0.37 +3.1 868,729 - DZA65_RS04120 0.37 -0.5 868,732 + DZA65_RS04120 0.38 +1.5 868,732 + DZA65_RS04120 0.38 -2.4 868,732 + DZA65_RS04120 0.38 +2.5 868,732 + DZA65_RS04120 0.38 -1.8 868,733 - DZA65_RS04120 0.38 +0.5 868,733 - DZA65_RS04120 0.38 +0.8 868,814 + DZA65_RS04120 0.56 -1.4 868,815 - DZA65_RS04120 0.56 -0.8 868,927 + DZA65_RS04120 0.81 +1.4 868,927 + DZA65_RS04120 0.81 +0.2 868,927 + DZA65_RS04120 0.81 +1.0 868,927 + DZA65_RS04120 0.81 +2.5 868,928 - DZA65_RS04120 0.81 +1.0 868,928 - DZA65_RS04120 0.81 -0.2 868,928 - DZA65_RS04120 0.81 +0.5 868,928 - DZA65_RS04120 0.81 +0.5 869,054 + DZA65_RS04125 0.10 -1.2 869,322 + -0.2 869,322 + -0.1 869,322 + +0.1 869,323 - +0.8 869,323 - +0.3 869,323 - -0.0 869,323 - -1.3 869,323 - +0.8 869,340 + -1.5 869,340 + +1.5 869,340 + -1.9 869,340 + +0.2 869,340 + +0.2 869,340 + +0.7 869,341 - -1.1 869,341 - -1.9 869,341 - -1.0 869,341 - +1.4 869,341 - +0.1 869,341 - +0.0 869,341 - +0.2 869,341 - +0.0 869,341 - -0.5 869,345 - -0.1 869,415 - DZA65_RS04130 0.29 -1.5 869,415 - DZA65_RS04130 0.29 -0.5 869,479 + DZA65_RS04130 0.48 -0.3 869,480 - DZA65_RS04130 0.48 -2.8 869,480 - DZA65_RS04130 0.48 -0.8 869,525 + DZA65_RS04130 0.61 +0.9 869,546 + DZA65_RS04130 0.68 +1.1 869,546 + DZA65_RS04130 0.68 -0.5 869,547 - DZA65_RS04130 0.68 -1.9 869,547 - DZA65_RS04130 0.68 +1.4 869,547 - DZA65_RS04130 0.68 +1.4 869,547 - DZA65_RS04130 0.68 +1.5 869,547 - DZA65_RS04130 0.68 +0.1 869,547 - DZA65_RS04130 0.68 -1.0 869,547 - DZA65_RS04130 0.68 -1.0
Or see this region's nucleotide sequence