Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04065 and DZA65_RS22810 are separated by 263 nucleotides DZA65_RS22810 and DZA65_RS04070 are separated by 6 nucleotides DZA65_RS04070 and DZA65_RS04075 overlap by 1 nucleotides
DZA65_RS04065: DZA65_RS04065 - DNA adenine methylase, at 858,513 to 859,373
_RS04065
DZA65_RS22810: DZA65_RS22810 - hypothetical protein, at 859,637 to 859,792
_RS22810
DZA65_RS04070: DZA65_RS04070 - ogr/Delta-like zinc finger family protein, at 859,799 to 860,119
_RS04070
DZA65_RS04075: DZA65_RS04075 - phage portal protein, at 860,119 to 861,147
_RS04075
Position (kb) 859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 859.405 kb on - strand at 859.410 kb on - strand at 859.461 kb on + strand at 859.462 kb on - strand at 859.462 kb on - strand at 859.464 kb on + strand at 859.464 kb on + strand at 859.465 kb on - strand at 859.465 kb on - strand at 859.465 kb on - strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.471 kb on - strand at 859.471 kb on - strand at 859.471 kb on - strand at 859.471 kb on - strand at 859.520 kb on - strand at 859.520 kb on - strand at 859.565 kb on - strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.619 kb on - strand at 859.779 kb on + strand at 859.779 kb on + strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.800 kb on + strand at 859.826 kb on + strand at 859.826 kb on + strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.877 kb on + strand, within DZA65_RS04070 at 859.944 kb on + strand, within DZA65_RS04070 at 859.974 kb on + strand, within DZA65_RS04070 at 859.974 kb on + strand, within DZA65_RS04070 at 859.975 kb on - strand, within DZA65_RS04070 at 859.975 kb on - strand, within DZA65_RS04070 at 859.978 kb on + strand, within DZA65_RS04070 at 859.978 kb on + strand, within DZA65_RS04070 at 859.979 kb on - strand, within DZA65_RS04070 at 859.979 kb on - strand, within DZA65_RS04070 at 860.054 kb on + strand, within DZA65_RS04070 at 860.065 kb on + strand, within DZA65_RS04070 at 860.085 kb on - strand, within DZA65_RS04070 at 860.111 kb on - strand at 860.139 kb on + strand at 860.140 kb on - strand at 860.140 kb on - strand at 860.140 kb on - strand at 860.161 kb on + strand at 860.162 kb on - strand at 860.247 kb on - strand, within DZA65_RS04075 at 860.247 kb on - strand, within DZA65_RS04075 at 860.247 kb on - strand, within DZA65_RS04075 at 860.247 kb on - strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.339 kb on - strand, within DZA65_RS04075 at 860.339 kb on - strand, within DZA65_RS04075 at 860.339 kb on - strand, within DZA65_RS04075 at 860.451 kb on + strand, within DZA65_RS04075 at 860.485 kb on + strand, within DZA65_RS04075 at 860.540 kb on + strand, within DZA65_RS04075 at 860.540 kb on + strand, within DZA65_RS04075 at 860.541 kb on - strand, within DZA65_RS04075 at 860.568 kb on + strand, within DZA65_RS04075 at 860.573 kb on + strand, within DZA65_RS04075 at 860.574 kb on - strand, within DZA65_RS04075 at 860.577 kb on - strand, within DZA65_RS04075 at 860.637 kb on - strand, within DZA65_RS04075 at 860.652 kb on - strand, within DZA65_RS04075 at 860.672 kb on + strand, within DZA65_RS04075 at 860.672 kb on + strand, within DZA65_RS04075 at 860.673 kb on - strand, within DZA65_RS04075 at 860.673 kb on - strand, within DZA65_RS04075 at 860.731 kb on + strand, within DZA65_RS04075 at 860.732 kb on - strand, within DZA65_RS04075 at 860.732 kb on - strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.833 kb on - strand, within DZA65_RS04075 at 860.850 kb on - strand, within DZA65_RS04075 at 860.911 kb on + strand, within DZA65_RS04075 at 860.920 kb on - strand, within DZA65_RS04075 at 860.930 kb on + strand, within DZA65_RS04075 at 860.931 kb on - strand, within DZA65_RS04075 at 860.931 kb on - strand, within DZA65_RS04075 at 860.989 kb on + strand, within DZA65_RS04075 at 861.023 kb on + strand, within DZA65_RS04075 at 861.023 kb on + strand, within DZA65_RS04075 at 861.024 kb on - strand, within DZA65_RS04075 at 861.039 kb on - strand, within DZA65_RS04075 at 861.055 kb on + strand at 861.056 kb on - strand at 861.056 kb on - strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 859,405 - +0.2 859,410 - -3.1 859,461 + +0.1 859,462 - +0.2 859,462 - -0.8 859,464 + -0.8 859,464 + +0.8 859,465 - -0.5 859,465 - +1.8 859,465 - -0.5 859,470 + +0.5 859,470 + +0.1 859,470 + +0.0 859,470 + -1.2 859,470 + -0.6 859,470 + -0.1 859,470 + -1.0 859,470 + +0.5 859,471 - +0.1 859,471 - +0.8 859,471 - +0.1 859,471 - -0.6 859,520 - +1.1 859,520 - +1.2 859,565 - -1.4 859,618 + -0.2 859,618 + +1.2 859,619 - +0.9 859,779 + +0.8 859,779 + +0.2 859,780 - +0.5 859,780 - +1.9 859,780 - -0.7 859,780 - -2.0 859,780 - +1.3 859,780 - +0.5 859,780 - -0.5 859,780 - -0.7 859,780 - -2.2 859,780 - -0.4 859,800 + +0.2 859,826 + +1.0 859,826 + +1.0 859,827 - -0.8 859,827 - -0.2 859,827 - -2.7 859,827 - -0.7 859,827 - +0.6 859,877 + DZA65_RS04070 0.24 -0.4 859,944 + DZA65_RS04070 0.45 +0.1 859,974 + DZA65_RS04070 0.55 +0.1 859,974 + DZA65_RS04070 0.55 +1.5 859,975 - DZA65_RS04070 0.55 -0.3 859,975 - DZA65_RS04070 0.55 +1.3 859,978 + DZA65_RS04070 0.56 -1.2 859,978 + DZA65_RS04070 0.56 +0.7 859,979 - DZA65_RS04070 0.56 +0.5 859,979 - DZA65_RS04070 0.56 +1.6 860,054 + DZA65_RS04070 0.79 +0.1 860,065 + DZA65_RS04070 0.83 +0.1 860,085 - DZA65_RS04070 0.89 +1.4 860,111 - -2.4 860,139 + +0.2 860,140 - -1.4 860,140 - +0.8 860,140 - -0.1 860,161 + +1.9 860,162 - +0.9 860,247 - DZA65_RS04075 0.12 -1.4 860,247 - DZA65_RS04075 0.12 -2.4 860,247 - DZA65_RS04075 0.12 -0.9 860,247 - DZA65_RS04075 0.12 +0.5 860,338 + DZA65_RS04075 0.21 -0.0 860,338 + DZA65_RS04075 0.21 +0.8 860,338 + DZA65_RS04075 0.21 -0.2 860,338 + DZA65_RS04075 0.21 +0.6 860,338 + DZA65_RS04075 0.21 -0.2 860,338 + DZA65_RS04075 0.21 -1.7 860,339 - DZA65_RS04075 0.21 -0.8 860,339 - DZA65_RS04075 0.21 +0.2 860,339 - DZA65_RS04075 0.21 -1.5 860,451 + DZA65_RS04075 0.32 -1.5 860,485 + DZA65_RS04075 0.36 +0.5 860,540 + DZA65_RS04075 0.41 +0.4 860,540 + DZA65_RS04075 0.41 -0.6 860,541 - DZA65_RS04075 0.41 +0.8 860,568 + DZA65_RS04075 0.44 +0.8 860,573 + DZA65_RS04075 0.44 -1.7 860,574 - DZA65_RS04075 0.44 +1.0 860,577 - DZA65_RS04075 0.45 +0.8 860,637 - DZA65_RS04075 0.50 -0.0 860,652 - DZA65_RS04075 0.52 -0.0 860,672 + DZA65_RS04075 0.54 -0.4 860,672 + DZA65_RS04075 0.54 +0.5 860,673 - DZA65_RS04075 0.54 -0.1 860,673 - DZA65_RS04075 0.54 -0.7 860,731 + DZA65_RS04075 0.59 -2.2 860,732 - DZA65_RS04075 0.60 -1.8 860,732 - DZA65_RS04075 0.60 +1.4 860,765 + DZA65_RS04075 0.63 -0.4 860,765 + DZA65_RS04075 0.63 +0.5 860,765 + DZA65_RS04075 0.63 +1.2 860,765 + DZA65_RS04075 0.63 -2.4 860,766 - DZA65_RS04075 0.63 +0.4 860,766 - DZA65_RS04075 0.63 +0.2 860,766 - DZA65_RS04075 0.63 +4.6 860,766 - DZA65_RS04075 0.63 +0.4 860,766 - DZA65_RS04075 0.63 -0.3 860,833 - DZA65_RS04075 0.69 +1.4 860,850 - DZA65_RS04075 0.71 +1.2 860,911 + DZA65_RS04075 0.77 -0.6 860,920 - DZA65_RS04075 0.78 -0.5 860,930 + DZA65_RS04075 0.79 +0.8 860,931 - DZA65_RS04075 0.79 +0.3 860,931 - DZA65_RS04075 0.79 -0.5 860,989 + DZA65_RS04075 0.85 +3.1 861,023 + DZA65_RS04075 0.88 +0.9 861,023 + DZA65_RS04075 0.88 -0.3 861,024 - DZA65_RS04075 0.88 -1.6 861,039 - DZA65_RS04075 0.89 +1.4 861,055 + +0.4 861,056 - +0.0 861,056 - +0.9 861,087 + -0.5 861,087 + +3.7 861,087 + +0.2 861,087 + +2.8 861,087 + -0.8 861,088 - -0.7 861,088 - +0.5 861,088 - -2.2 861,088 - +0.3 861,088 - -0.4 861,088 - -0.4 861,088 - -0.0 861,088 - -1.2 861,088 - +0.4 861,088 - -1.5 861,088 - +0.1 861,088 - +0.7
Or see this region's nucleotide sequence