Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03890 and DZA65_RS03895 are separated by 26 nucleotides DZA65_RS03895 and DZA65_RS03900 are separated by 23 nucleotides DZA65_RS03900 and DZA65_RS03910 are separated by 365 nucleotides
DZA65_RS03890: DZA65_RS03890 - 5-dehydro-2-deoxygluconokinase, at 826,379 to 828,322
_RS03890
DZA65_RS03895: DZA65_RS03895 - myo-inosose-2 dehydratase, at 828,349 to 829,239
_RS03895
DZA65_RS03900: DZA65_RS03900 - 5-deoxy-glucuronate isomerase, at 829,263 to 830,090
_RS03900
DZA65_RS03910: DZA65_RS03910 - lytic murein transglycosylase B, at 830,456 to 831,559
_RS03910
Position (kb) 829
830
831 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 828.280 kb on + strand at 828.280 kb on + strand at 828.280 kb on + strand at 828.280 kb on + strand at 828.280 kb on + strand at 828.280 kb on + strand at 828.280 kb on + strand at 828.280 kb on + strand at 828.281 kb on - strand at 828.281 kb on - strand at 828.281 kb on - strand at 828.284 kb on + strand at 828.284 kb on + strand at 828.284 kb on + strand at 828.284 kb on + strand at 828.284 kb on + strand at 828.284 kb on + strand at 828.284 kb on + strand at 828.284 kb on + strand at 828.285 kb on - strand at 828.285 kb on - strand at 828.285 kb on - strand at 828.285 kb on - strand at 828.330 kb on + strand at 828.331 kb on - strand at 828.331 kb on - strand at 828.366 kb on + strand at 828.369 kb on + strand at 828.369 kb on + strand at 828.369 kb on + strand at 828.370 kb on - strand at 828.507 kb on - strand, within DZA65_RS03895 at 828.556 kb on + strand, within DZA65_RS03895 at 828.743 kb on - strand, within DZA65_RS03895 at 828.772 kb on + strand, within DZA65_RS03895 at 828.813 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.968 kb on + strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 828.969 kb on - strand, within DZA65_RS03895 at 829.015 kb on + strand, within DZA65_RS03895 at 829.017 kb on + strand, within DZA65_RS03895 at 829.017 kb on + strand, within DZA65_RS03895 at 829.018 kb on - strand, within DZA65_RS03895 at 829.044 kb on - strand, within DZA65_RS03895 at 829.044 kb on - strand, within DZA65_RS03895 at 829.244 kb on - strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.273 kb on + strand at 829.274 kb on - strand at 829.274 kb on - strand at 829.274 kb on - strand at 829.323 kb on - strand at 829.323 kb on - strand at 829.365 kb on + strand, within DZA65_RS03900 at 829.365 kb on + strand, within DZA65_RS03900 at 829.366 kb on - strand, within DZA65_RS03900 at 829.366 kb on - strand, within DZA65_RS03900 at 829.527 kb on + strand, within DZA65_RS03900 at 829.527 kb on + strand, within DZA65_RS03900 at 829.527 kb on + strand, within DZA65_RS03900 at 829.527 kb on + strand, within DZA65_RS03900 at 829.528 kb on - strand, within DZA65_RS03900 at 829.528 kb on - strand, within DZA65_RS03900 at 829.627 kb on + strand, within DZA65_RS03900 at 829.671 kb on - strand, within DZA65_RS03900 at 829.688 kb on + strand, within DZA65_RS03900 at 829.688 kb on + strand, within DZA65_RS03900 at 829.688 kb on + strand, within DZA65_RS03900 at 829.689 kb on - strand, within DZA65_RS03900 at 829.740 kb on + strand, within DZA65_RS03900 at 829.740 kb on + strand, within DZA65_RS03900 at 829.741 kb on - strand, within DZA65_RS03900 at 829.741 kb on - strand, within DZA65_RS03900 at 829.741 kb on - strand, within DZA65_RS03900 at 829.741 kb on - strand, within DZA65_RS03900 at 829.767 kb on + strand, within DZA65_RS03900 at 829.812 kb on + strand, within DZA65_RS03900 at 829.812 kb on + strand, within DZA65_RS03900 at 829.812 kb on + strand, within DZA65_RS03900 at 829.812 kb on + strand, within DZA65_RS03900 at 829.812 kb on + strand, within DZA65_RS03900 at 829.813 kb on - strand, within DZA65_RS03900 at 829.813 kb on - strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.827 kb on + strand, within DZA65_RS03900 at 829.828 kb on - strand at 829.828 kb on - strand, within DZA65_RS03900 at 829.828 kb on - strand, within DZA65_RS03900 at 829.828 kb on - strand, within DZA65_RS03900 at 829.828 kb on - strand, within DZA65_RS03900 at 829.830 kb on + strand, within DZA65_RS03900 at 829.830 kb on + strand, within DZA65_RS03900 at 829.830 kb on + strand, within DZA65_RS03900 at 829.830 kb on + strand, within DZA65_RS03900 at 829.831 kb on - strand, within DZA65_RS03900 at 829.831 kb on - strand, within DZA65_RS03900 at 829.875 kb on + strand, within DZA65_RS03900 at 829.875 kb on + strand, within DZA65_RS03900 at 829.876 kb on - strand, within DZA65_RS03900 at 829.914 kb on + strand, within DZA65_RS03900 at 829.914 kb on + strand, within DZA65_RS03900 at 829.914 kb on + strand, within DZA65_RS03900 at 829.915 kb on - strand, within DZA65_RS03900 at 829.983 kb on + strand, within DZA65_RS03900 at 829.983 kb on + strand, within DZA65_RS03900 at 829.983 kb on + strand, within DZA65_RS03900 at 829.983 kb on + strand, within DZA65_RS03900 at 829.983 kb on + strand, within DZA65_RS03900 at 829.983 kb on + strand, within DZA65_RS03900 at 829.983 kb on + strand, within DZA65_RS03900 at 829.984 kb on - strand, within DZA65_RS03900 at 829.984 kb on - strand, within DZA65_RS03900 at 829.984 kb on - strand, within DZA65_RS03900 at 829.986 kb on + strand, within DZA65_RS03900 at 829.986 kb on + strand, within DZA65_RS03900 at 829.986 kb on + strand, within DZA65_RS03900 at 829.986 kb on + strand, within DZA65_RS03900 at 829.986 kb on + strand, within DZA65_RS03900 at 829.987 kb on - strand at 829.987 kb on - strand, within DZA65_RS03900 at 829.987 kb on - strand, within DZA65_RS03900 at 829.987 kb on - strand, within DZA65_RS03900 at 830.027 kb on + strand at 830.028 kb on - strand at 830.067 kb on + strand at 830.098 kb on - strand at 830.284 kb on + strand at 830.284 kb on + strand at 830.284 kb on + strand at 830.403 kb on + strand at 830.415 kb on + strand at 830.416 kb on - strand at 830.457 kb on + strand at 830.458 kb on - strand at 830.458 kb on - strand at 830.458 kb on - strand at 830.460 kb on + strand at 830.461 kb on - strand at 830.492 kb on + strand at 830.493 kb on - strand at 830.514 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.519 kb on + strand at 830.520 kb on - strand at 830.520 kb on - strand at 830.520 kb on - strand at 830.520 kb on - strand at 830.520 kb on - strand at 830.520 kb on - strand at 830.532 kb on + strand at 830.532 kb on + strand at 830.532 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.578 kb on - strand, within DZA65_RS03910 at 830.578 kb on - strand, within DZA65_RS03910 at 830.580 kb on + strand, within DZA65_RS03910 at 830.580 kb on + strand, within DZA65_RS03910 at 830.580 kb on + strand, within DZA65_RS03910 at 830.580 kb on + strand, within DZA65_RS03910 at 830.580 kb on + strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.581 kb on - strand, within DZA65_RS03910 at 830.769 kb on + strand, within DZA65_RS03910 at 830.769 kb on + strand, within DZA65_RS03910 at 830.769 kb on + strand, within DZA65_RS03910 at 830.769 kb on + strand, within DZA65_RS03910 at 830.769 kb on + strand, within DZA65_RS03910 at 830.769 kb on + strand, within DZA65_RS03910 at 830.769 kb on + strand, within DZA65_RS03910 at 830.770 kb on - strand, within DZA65_RS03910 at 830.770 kb on - strand, within DZA65_RS03910 at 830.770 kb on - strand, within DZA65_RS03910 at 830.770 kb on - strand, within DZA65_RS03910 at 830.770 kb on - strand, within DZA65_RS03910 at 830.770 kb on - strand, within DZA65_RS03910 at 830.844 kb on + strand, within DZA65_RS03910 at 830.844 kb on + strand, within DZA65_RS03910 at 830.952 kb on + strand, within DZA65_RS03910 at 830.953 kb on - strand, within DZA65_RS03910 at 830.953 kb on - strand, within DZA65_RS03910 at 830.953 kb on - strand, within DZA65_RS03910 at 830.973 kb on + strand, within DZA65_RS03910 at 830.973 kb on + strand, within DZA65_RS03910 at 830.974 kb on - strand, within DZA65_RS03910 at 830.974 kb on - strand, within DZA65_RS03910 at 830.974 kb on - strand, within DZA65_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 828,280 + +0.5 828,280 + -1.0 828,280 + -1.0 828,280 + -1.8 828,280 + -0.8 828,280 + +0.0 828,280 + -0.7 828,280 + +0.8 828,281 - +1.0 828,281 - -1.2 828,281 - +0.6 828,284 + +0.4 828,284 + -0.5 828,284 + -1.2 828,284 + -0.4 828,284 + -0.5 828,284 + +0.2 828,284 + -0.4 828,284 + +0.0 828,285 - -0.2 828,285 - -1.2 828,285 - +0.2 828,285 - -0.8 828,330 + -0.7 828,331 - -0.1 828,331 - -1.8 828,366 + +1.4 828,369 + +1.5 828,369 + +0.2 828,369 + -1.2 828,370 - -0.2 828,507 - DZA65_RS03895 0.18 +0.6 828,556 + DZA65_RS03895 0.23 -0.5 828,743 - DZA65_RS03895 0.44 +0.3 828,772 + DZA65_RS03895 0.47 +2.4 828,813 + DZA65_RS03895 0.52 +0.5 828,968 + DZA65_RS03895 0.69 -0.4 828,968 + DZA65_RS03895 0.69 +0.8 828,968 + DZA65_RS03895 0.69 -0.1 828,968 + DZA65_RS03895 0.69 +1.4 828,968 + DZA65_RS03895 0.69 +0.2 828,968 + DZA65_RS03895 0.69 +0.2 828,968 + DZA65_RS03895 0.69 +1.5 828,968 + DZA65_RS03895 0.69 +1.4 828,968 + DZA65_RS03895 0.69 -0.8 828,968 + DZA65_RS03895 0.69 +0.4 828,968 + DZA65_RS03895 0.69 -1.2 828,969 - DZA65_RS03895 0.70 +0.8 828,969 - DZA65_RS03895 0.70 +0.4 828,969 - +1.8 828,969 - DZA65_RS03895 0.70 -0.2 828,969 - DZA65_RS03895 0.70 +0.6 828,969 - DZA65_RS03895 0.70 +1.0 828,969 - DZA65_RS03895 0.70 +0.2 828,969 - DZA65_RS03895 0.70 +0.5 828,969 - DZA65_RS03895 0.70 +0.8 828,969 - DZA65_RS03895 0.70 +0.9 829,015 + DZA65_RS03895 0.75 -0.4 829,017 + DZA65_RS03895 0.75 -0.4 829,017 + DZA65_RS03895 0.75 -1.2 829,018 - DZA65_RS03895 0.75 +0.4 829,044 - DZA65_RS03895 0.78 -2.2 829,044 - DZA65_RS03895 0.78 +0.1 829,244 - +0.7 829,273 + -0.5 829,273 + +3.3 829,273 + +0.2 829,273 + +0.6 829,273 + +0.6 829,273 + +1.0 829,273 + -0.6 829,273 + -0.9 829,273 + -1.6 829,273 + +0.2 829,274 - -0.2 829,274 - +0.7 829,274 - -0.3 829,323 - +0.8 829,323 - -1.6 829,365 + DZA65_RS03900 0.12 -0.0 829,365 + DZA65_RS03900 0.12 -0.2 829,366 - DZA65_RS03900 0.12 -1.7 829,366 - DZA65_RS03900 0.12 +0.3 829,527 + DZA65_RS03900 0.32 -1.0 829,527 + DZA65_RS03900 0.32 +1.3 829,527 + DZA65_RS03900 0.32 -0.2 829,527 + DZA65_RS03900 0.32 -1.9 829,528 - DZA65_RS03900 0.32 +1.2 829,528 - DZA65_RS03900 0.32 -0.2 829,627 + DZA65_RS03900 0.44 +0.8 829,671 - DZA65_RS03900 0.49 -0.6 829,688 + DZA65_RS03900 0.51 +0.6 829,688 + DZA65_RS03900 0.51 -1.1 829,688 + DZA65_RS03900 0.51 +0.6 829,689 - DZA65_RS03900 0.51 -0.8 829,740 + DZA65_RS03900 0.58 +0.0 829,740 + DZA65_RS03900 0.58 +0.0 829,741 - DZA65_RS03900 0.58 +0.0 829,741 - DZA65_RS03900 0.58 +2.4 829,741 - DZA65_RS03900 0.58 +0.3 829,741 - DZA65_RS03900 0.58 +0.1 829,767 + DZA65_RS03900 0.61 +1.4 829,812 + DZA65_RS03900 0.66 +0.5 829,812 + DZA65_RS03900 0.66 -1.4 829,812 + DZA65_RS03900 0.66 -1.7 829,812 + DZA65_RS03900 0.66 +0.2 829,812 + DZA65_RS03900 0.66 +0.2 829,813 - DZA65_RS03900 0.66 +0.8 829,813 - DZA65_RS03900 0.66 -1.5 829,827 + DZA65_RS03900 0.68 -0.2 829,827 + DZA65_RS03900 0.68 -0.0 829,827 + DZA65_RS03900 0.68 -0.6 829,827 + DZA65_RS03900 0.68 +0.1 829,827 + DZA65_RS03900 0.68 +5.0 829,827 + DZA65_RS03900 0.68 -0.5 829,827 + DZA65_RS03900 0.68 -0.7 829,827 + DZA65_RS03900 0.68 +0.1 829,827 + DZA65_RS03900 0.68 +0.6 829,828 - +1.8 829,828 - DZA65_RS03900 0.68 -1.4 829,828 - DZA65_RS03900 0.68 -0.8 829,828 - DZA65_RS03900 0.68 -0.1 829,828 - DZA65_RS03900 0.68 -0.2 829,830 + DZA65_RS03900 0.68 +0.5 829,830 + DZA65_RS03900 0.68 -0.4 829,830 + DZA65_RS03900 0.68 -0.2 829,830 + DZA65_RS03900 0.68 +2.8 829,831 - DZA65_RS03900 0.69 -0.1 829,831 - DZA65_RS03900 0.69 +0.3 829,875 + DZA65_RS03900 0.74 -0.1 829,875 + DZA65_RS03900 0.74 +1.8 829,876 - DZA65_RS03900 0.74 -1.2 829,914 + DZA65_RS03900 0.79 -0.4 829,914 + DZA65_RS03900 0.79 -1.8 829,914 + DZA65_RS03900 0.79 -2.4 829,915 - DZA65_RS03900 0.79 +0.4 829,983 + DZA65_RS03900 0.87 -2.0 829,983 + DZA65_RS03900 0.87 +0.2 829,983 + DZA65_RS03900 0.87 +0.0 829,983 + DZA65_RS03900 0.87 -0.5 829,983 + DZA65_RS03900 0.87 +0.5 829,983 + DZA65_RS03900 0.87 -0.3 829,983 + DZA65_RS03900 0.87 +0.8 829,984 - DZA65_RS03900 0.87 -0.2 829,984 - DZA65_RS03900 0.87 -1.6 829,984 - DZA65_RS03900 0.87 +0.2 829,986 + DZA65_RS03900 0.87 +1.5 829,986 + DZA65_RS03900 0.87 -2.1 829,986 + DZA65_RS03900 0.87 +0.6 829,986 + DZA65_RS03900 0.87 +0.5 829,986 + DZA65_RS03900 0.87 +0.8 829,987 - -0.8 829,987 - DZA65_RS03900 0.87 +0.6 829,987 - DZA65_RS03900 0.87 -0.2 829,987 - DZA65_RS03900 0.87 -0.8 830,027 + +1.5 830,028 - -1.5 830,067 + -0.6 830,098 - -0.0 830,284 + -1.5 830,284 + -1.2 830,284 + -0.4 830,403 + +0.1 830,415 + -0.1 830,416 - +1.3 830,457 + +1.8 830,458 - -2.2 830,458 - -0.4 830,458 - +0.8 830,460 + +0.6 830,461 - +0.0 830,492 + -0.0 830,493 - -0.5 830,514 + +1.8 830,519 + -0.6 830,519 + +0.5 830,519 + +1.3 830,519 + +0.2 830,519 + -0.5 830,519 + +2.0 830,519 + +0.6 830,519 + +0.0 830,519 + +0.7 830,519 + +0.0 830,519 + -0.3 830,519 + +0.0 830,519 + +0.7 830,519 + +0.2 830,519 + +2.9 830,520 - +1.4 830,520 - +0.2 830,520 - +0.9 830,520 - -0.6 830,520 - -0.1 830,520 - -0.4 830,532 + +1.3 830,532 + +1.0 830,532 + -1.9 830,547 + +1.0 830,547 + +0.2 830,578 - DZA65_RS03910 0.11 -1.1 830,578 - DZA65_RS03910 0.11 +0.0 830,580 + DZA65_RS03910 0.11 -0.5 830,580 + DZA65_RS03910 0.11 +0.0 830,580 + DZA65_RS03910 0.11 +0.3 830,580 + DZA65_RS03910 0.11 -0.2 830,580 + DZA65_RS03910 0.11 +1.5 830,581 - DZA65_RS03910 0.11 -1.0 830,581 - DZA65_RS03910 0.11 +1.9 830,581 - DZA65_RS03910 0.11 -0.6 830,581 - DZA65_RS03910 0.11 +0.1 830,581 - DZA65_RS03910 0.11 -0.5 830,581 - DZA65_RS03910 0.11 -1.0 830,581 - DZA65_RS03910 0.11 +0.1 830,581 - DZA65_RS03910 0.11 +0.8 830,769 + DZA65_RS03910 0.28 -0.4 830,769 + DZA65_RS03910 0.28 -0.0 830,769 + DZA65_RS03910 0.28 -0.1 830,769 + DZA65_RS03910 0.28 -1.5 830,769 + DZA65_RS03910 0.28 +0.1 830,769 + DZA65_RS03910 0.28 -2.5 830,769 + DZA65_RS03910 0.28 -1.1 830,770 - DZA65_RS03910 0.28 +0.2 830,770 - DZA65_RS03910 0.28 -0.5 830,770 - DZA65_RS03910 0.28 +0.2 830,770 - DZA65_RS03910 0.28 +1.1 830,770 - DZA65_RS03910 0.28 +0.9 830,770 - DZA65_RS03910 0.28 +0.5 830,844 + DZA65_RS03910 0.35 -0.8 830,844 + DZA65_RS03910 0.35 -0.2 830,952 + DZA65_RS03910 0.45 +1.9 830,953 - DZA65_RS03910 0.45 -0.1 830,953 - DZA65_RS03910 0.45 -0.6 830,953 - DZA65_RS03910 0.45 -1.0 830,973 + DZA65_RS03910 0.47 +0.2 830,973 + DZA65_RS03910 0.47 +0.9 830,974 - DZA65_RS03910 0.47 +1.3 830,974 - DZA65_RS03910 0.47 -0.0 830,974 - DZA65_RS03910 0.47 +0.2
Or see this region's nucleotide sequence