Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03850

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03845 and DZA65_RS03850 are separated by 150 nucleotidesDZA65_RS03850 and DZA65_RS03855 are separated by 312 nucleotides DZA65_RS03845: DZA65_RS03845 - D-alanine--D-alanine ligase, at 814,071 to 815,171 _RS03845 DZA65_RS03850: DZA65_RS03850 - MurR/RpiR family transcriptional regulator, at 815,322 to 816,179 _RS03850 DZA65_RS03855: DZA65_RS03855 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 816,492 to 818,003 _RS03855 Position (kb) 815 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 815.201 kb on - strandat 815.201 kb on - strandat 815.201 kb on - strandat 815.201 kb on - strandat 815.251 kb on - strandat 815.360 kb on + strandat 815.361 kb on - strandat 815.493 kb on + strand, within DZA65_RS03850at 815.493 kb on + strand, within DZA65_RS03850at 815.494 kb on - strand, within DZA65_RS03850at 815.622 kb on + strand, within DZA65_RS03850at 815.622 kb on + strand, within DZA65_RS03850at 815.622 kb on + strandat 815.622 kb on + strand, within DZA65_RS03850at 815.622 kb on + strand, within DZA65_RS03850at 815.622 kb on + strand, within DZA65_RS03850at 815.622 kb on + strand, within DZA65_RS03850at 815.622 kb on + strand, within DZA65_RS03850at 815.622 kb on + strand, within DZA65_RS03850at 815.623 kb on - strand, within DZA65_RS03850at 815.623 kb on - strand, within DZA65_RS03850at 815.623 kb on - strand, within DZA65_RS03850at 815.623 kb on - strand, within DZA65_RS03850at 815.623 kb on - strand, within DZA65_RS03850at 815.623 kb on - strand, within DZA65_RS03850at 815.693 kb on - strand, within DZA65_RS03850at 815.701 kb on + strand, within DZA65_RS03850at 815.701 kb on + strand, within DZA65_RS03850at 815.701 kb on + strand, within DZA65_RS03850at 815.702 kb on - strand, within DZA65_RS03850at 815.702 kb on - strand, within DZA65_RS03850at 815.702 kb on - strand, within DZA65_RS03850at 815.702 kb on - strand, within DZA65_RS03850at 815.738 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strandat 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.740 kb on + strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strandat 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.741 kb on - strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.744 kb on + strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.745 kb on - strand, within DZA65_RS03850at 815.763 kb on + strand, within DZA65_RS03850at 815.764 kb on - strand, within DZA65_RS03850at 815.917 kb on + strand, within DZA65_RS03850at 815.917 kb on + strand, within DZA65_RS03850at 815.918 kb on - strand, within DZA65_RS03850at 815.918 kb on - strand, within DZA65_RS03850at 815.918 kb on - strand, within DZA65_RS03850at 815.918 kb on - strand, within DZA65_RS03850at 816.005 kb on + strand, within DZA65_RS03850at 816.006 kb on - strand, within DZA65_RS03850at 816.088 kb on + strand, within DZA65_RS03850at 816.089 kb on - strand, within DZA65_RS03850at 816.150 kb on + strandat 816.150 kb on + strandat 816.151 kb on - strandat 816.173 kb on + strandat 816.179 kb on + strandat 816.179 kb on + strandat 816.179 kb on + strandat 816.179 kb on + strandat 816.179 kb on + strandat 816.179 kb on + strandat 816.180 kb on - strandat 816.180 kb on - strandat 816.180 kb on - strandat 816.180 kb on - strandat 816.180 kb on - strandat 816.286 kb on + strandat 816.442 kb on + strandat 816.442 kb on + strandat 816.443 kb on - strandat 816.469 kb on + strandat 816.487 kb on + strandat 816.487 kb on + strandat 816.487 kb on + strandat 816.488 kb on - strandat 816.774 kb on + strand, within DZA65_RS03855at 816.883 kb on + strand, within DZA65_RS03855at 816.883 kb on + strand, within DZA65_RS03855at 816.884 kb on - strand, within DZA65_RS03855at 816.929 kb on + strand, within DZA65_RS03855at 816.930 kb on - strand, within DZA65_RS03855at 816.938 kb on + strand, within DZA65_RS03855at 817.084 kb on + strand, within DZA65_RS03855at 817.084 kb on + strand, within DZA65_RS03855at 817.085 kb on - strand, within DZA65_RS03855at 817.085 kb on - strand, within DZA65_RS03855at 817.085 kb on - strand, within DZA65_RS03855at 817.088 kb on + strand, within DZA65_RS03855at 817.088 kb on + strand, within DZA65_RS03855at 817.088 kb on + strand, within DZA65_RS03855at 817.088 kb on + strand, within DZA65_RS03855at 817.089 kb on - strand, within DZA65_RS03855at 817.089 kb on - strand, within DZA65_RS03855

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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815,201 - -2.4
815,201 - -0.4
815,201 - -0.8
815,201 - -1.8
815,251 - -0.2
815,360 + +0.8
815,361 - -1.2
815,493 + DZA65_RS03850 0.20 +0.7
815,493 + DZA65_RS03850 0.20 +0.8
815,494 - DZA65_RS03850 0.20 +2.5
815,622 + DZA65_RS03850 0.35 +0.7
815,622 + DZA65_RS03850 0.35 +0.0
815,622 + +0.8
815,622 + DZA65_RS03850 0.35 -0.2
815,622 + DZA65_RS03850 0.35 +0.3
815,622 + DZA65_RS03850 0.35 +0.3
815,622 + DZA65_RS03850 0.35 +0.5
815,622 + DZA65_RS03850 0.35 +1.8
815,622 + DZA65_RS03850 0.35 +0.5
815,623 - DZA65_RS03850 0.35 +0.5
815,623 - DZA65_RS03850 0.35 +1.0
815,623 - DZA65_RS03850 0.35 +1.7
815,623 - DZA65_RS03850 0.35 +1.4
815,623 - DZA65_RS03850 0.35 -2.0
815,623 - DZA65_RS03850 0.35 +1.7
815,693 - DZA65_RS03850 0.43 +0.7
815,701 + DZA65_RS03850 0.44 +0.8
815,701 + DZA65_RS03850 0.44 -0.4
815,701 + DZA65_RS03850 0.44 +0.1
815,702 - DZA65_RS03850 0.44 +2.1
815,702 - DZA65_RS03850 0.44 +0.6
815,702 - DZA65_RS03850 0.44 +0.4
815,702 - DZA65_RS03850 0.44 +0.0
815,738 + DZA65_RS03850 0.48 +0.4
815,740 + DZA65_RS03850 0.49 +1.6
815,740 + DZA65_RS03850 0.49 -1.1
815,740 + DZA65_RS03850 0.49 -1.1
815,740 + DZA65_RS03850 0.49 +0.7
815,740 + DZA65_RS03850 0.49 -2.0
815,740 + DZA65_RS03850 0.49 +1.2
815,740 + DZA65_RS03850 0.49 +0.3
815,740 + DZA65_RS03850 0.49 -0.2
815,740 + DZA65_RS03850 0.49 +2.4
815,740 + DZA65_RS03850 0.49 +2.0
815,740 + DZA65_RS03850 0.49 -0.2
815,740 + DZA65_RS03850 0.49 +0.7
815,740 + DZA65_RS03850 0.49 +0.6
815,740 + DZA65_RS03850 0.49 +1.1
815,740 + DZA65_RS03850 0.49 +2.1
815,740 + DZA65_RS03850 0.49 +1.4
815,740 + DZA65_RS03850 0.49 -0.2
815,740 + DZA65_RS03850 0.49 +0.6
815,740 + DZA65_RS03850 0.49 +0.3
815,740 + +1.4
815,740 + DZA65_RS03850 0.49 +0.6
815,740 + DZA65_RS03850 0.49 -1.0
815,740 + DZA65_RS03850 0.49 +0.7
815,740 + DZA65_RS03850 0.49 +0.0
815,740 + DZA65_RS03850 0.49 +1.0
815,740 + DZA65_RS03850 0.49 +0.6
815,740 + DZA65_RS03850 0.49 -0.2
815,740 + DZA65_RS03850 0.49 +1.2
815,741 - DZA65_RS03850 0.49 +0.5
815,741 - DZA65_RS03850 0.49 +2.1
815,741 - DZA65_RS03850 0.49 +3.6
815,741 - DZA65_RS03850 0.49 +1.4
815,741 - DZA65_RS03850 0.49 +0.6
815,741 - DZA65_RS03850 0.49 +1.0
815,741 - DZA65_RS03850 0.49 +2.0
815,741 - DZA65_RS03850 0.49 +0.2
815,741 - DZA65_RS03850 0.49 +0.7
815,741 - DZA65_RS03850 0.49 +0.3
815,741 - DZA65_RS03850 0.49 +1.8
815,741 - DZA65_RS03850 0.49 +1.0
815,741 - DZA65_RS03850 0.49 +1.0
815,741 - DZA65_RS03850 0.49 +1.0
815,741 - DZA65_RS03850 0.49 +1.1
815,741 - DZA65_RS03850 0.49 +0.2
815,741 - DZA65_RS03850 0.49 -0.2
815,741 - DZA65_RS03850 0.49 +0.8
815,741 - +0.8
815,741 - DZA65_RS03850 0.49 +0.1
815,741 - DZA65_RS03850 0.49 -0.8
815,741 - DZA65_RS03850 0.49 +1.5
815,741 - DZA65_RS03850 0.49 +2.0
815,741 - DZA65_RS03850 0.49 +0.2
815,741 - DZA65_RS03850 0.49 +5.7
815,744 + DZA65_RS03850 0.49 -0.8
815,744 + DZA65_RS03850 0.49 +0.9
815,744 + DZA65_RS03850 0.49 +0.4
815,744 + DZA65_RS03850 0.49 +0.8
815,744 + DZA65_RS03850 0.49 +0.8
815,744 + DZA65_RS03850 0.49 -1.2
815,744 + DZA65_RS03850 0.49 +2.0
815,744 + DZA65_RS03850 0.49 +0.8
815,744 + DZA65_RS03850 0.49 +1.4
815,745 - DZA65_RS03850 0.49 +2.2
815,745 - DZA65_RS03850 0.49 +0.5
815,745 - DZA65_RS03850 0.49 +0.3
815,745 - DZA65_RS03850 0.49 +0.6
815,745 - DZA65_RS03850 0.49 +0.9
815,745 - DZA65_RS03850 0.49 -1.1
815,745 - DZA65_RS03850 0.49 +0.8
815,745 - DZA65_RS03850 0.49 +1.6
815,763 + DZA65_RS03850 0.51 -1.6
815,764 - DZA65_RS03850 0.52 +0.9
815,917 + DZA65_RS03850 0.69 +0.7
815,917 + DZA65_RS03850 0.69 -1.8
815,918 - DZA65_RS03850 0.69 +1.2
815,918 - DZA65_RS03850 0.69 +1.4
815,918 - DZA65_RS03850 0.69 +1.1
815,918 - DZA65_RS03850 0.69 +1.9
816,005 + DZA65_RS03850 0.80 +1.3
816,006 - DZA65_RS03850 0.80 +1.8
816,088 + DZA65_RS03850 0.89 +1.4
816,089 - DZA65_RS03850 0.89 -0.5
816,150 + -1.8
816,150 + +1.4
816,151 - +0.1
816,173 + +0.2
816,179 + +0.5
816,179 + +1.2
816,179 + +1.2
816,179 + +0.9
816,179 + +0.3
816,179 + +0.8
816,180 - +6.4
816,180 - +1.9
816,180 - +1.0
816,180 - +0.5
816,180 - +0.8
816,286 + +0.5
816,442 + +0.0
816,442 + -0.8
816,443 - +0.3
816,469 + +0.8
816,487 + +1.1
816,487 + -0.2
816,487 + -1.5
816,488 - -1.4
816,774 + DZA65_RS03855 0.19 +0.3
816,883 + DZA65_RS03855 0.26 +1.1
816,883 + DZA65_RS03855 0.26 -1.0
816,884 - DZA65_RS03855 0.26 -0.0
816,929 + DZA65_RS03855 0.29 +0.8
816,930 - DZA65_RS03855 0.29 -3.2
816,938 + DZA65_RS03855 0.29 -1.5
817,084 + DZA65_RS03855 0.39 -0.2
817,084 + DZA65_RS03855 0.39 +0.3
817,085 - DZA65_RS03855 0.39 +0.2
817,085 - DZA65_RS03855 0.39 -0.2
817,085 - DZA65_RS03855 0.39 -2.2
817,088 + DZA65_RS03855 0.39 -1.5
817,088 + DZA65_RS03855 0.39 -1.7
817,088 + DZA65_RS03855 0.39 -0.2
817,088 + DZA65_RS03855 0.39 -0.5
817,089 - DZA65_RS03855 0.39 -2.8
817,089 - DZA65_RS03855 0.39 -2.9

Or see this region's nucleotide sequence