Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03345 and DZA65_RS03355 are separated by 466 nucleotides DZA65_RS03355 and DZA65_RS03360 are separated by 340 nucleotides
DZA65_RS03345: DZA65_RS03345 - cysteine synthase family protein, at 707,797 to 708,735
_RS03345
DZA65_RS03355: DZA65_RS03355 - hypothetical protein, at 709,202 to 709,573
_RS03355
DZA65_RS03360: DZA65_RS03360 - restriction endonuclease subunit S, at 709,914 to 711,028
_RS03360
Position (kb) 709
710 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 708.252 kb on + strand, within DZA65_RS03345 at 708.348 kb on + strand, within DZA65_RS03345 at 708.349 kb on - strand, within DZA65_RS03345 at 708.608 kb on - strand, within DZA65_RS03345 at 708.619 kb on - strand, within DZA65_RS03345 at 708.700 kb on + strand at 708.703 kb on + strand at 708.704 kb on - strand at 708.718 kb on + strand at 708.746 kb on + strand at 708.752 kb on - strand at 708.767 kb on + strand at 708.769 kb on + strand at 708.769 kb on + strand at 708.770 kb on - strand at 708.785 kb on + strand at 708.885 kb on - strand at 708.898 kb on + strand at 708.898 kb on + strand at 708.901 kb on + strand at 708.902 kb on - strand at 708.904 kb on - strand at 708.906 kb on + strand at 708.907 kb on - strand at 708.907 kb on - strand at 708.908 kb on + strand at 708.909 kb on - strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 709.029 kb on + strand at 709.030 kb on - strand at 709.038 kb on + strand at 709.038 kb on + strand at 709.137 kb on - strand at 709.245 kb on - strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.285 kb on - strand, within DZA65_RS03355 at 709.491 kb on + strand, within DZA65_RS03355 at 709.537 kb on + strand at 709.537 kb on + strand at 709.538 kb on - strand at 709.538 kb on - strand at 709.542 kb on - strand at 709.574 kb on - strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.589 kb on - strand at 709.667 kb on - strand at 709.719 kb on + strand at 709.719 kb on + strand at 709.720 kb on - strand at 709.720 kb on - strand at 709.737 kb on - strand at 709.771 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.778 kb on + strand at 709.778 kb on + strand at 709.779 kb on - strand at 709.779 kb on - strand at 709.779 kb on - strand at 709.829 kb on + strand at 709.829 kb on + strand at 709.830 kb on - strand at 709.915 kb on + strand at 709.915 kb on + strand at 709.916 kb on - strand at 709.916 kb on - strand at 709.916 kb on - strand at 709.916 kb on - strand at 709.975 kb on - strand at 709.995 kb on + strand at 710.013 kb on - strand at 710.029 kb on + strand, within DZA65_RS03360 at 710.030 kb on - strand, within DZA65_RS03360 at 710.030 kb on - strand, within DZA65_RS03360 at 710.047 kb on - strand, within DZA65_RS03360 at 710.063 kb on + strand, within DZA65_RS03360 at 710.064 kb on - strand, within DZA65_RS03360 at 710.067 kb on + strand, within DZA65_RS03360 at 710.068 kb on - strand, within DZA65_RS03360 at 710.068 kb on - strand, within DZA65_RS03360 at 710.117 kb on + strand, within DZA65_RS03360 at 710.117 kb on + strand, within DZA65_RS03360 at 710.174 kb on + strand, within DZA65_RS03360 at 710.207 kb on - strand, within DZA65_RS03360 at 710.253 kb on - strand, within DZA65_RS03360 at 710.256 kb on + strand, within DZA65_RS03360 at 710.299 kb on - strand, within DZA65_RS03360 at 710.303 kb on - strand, within DZA65_RS03360 at 710.320 kb on - strand, within DZA65_RS03360 at 710.340 kb on + strand, within DZA65_RS03360 at 710.341 kb on - strand, within DZA65_RS03360 at 710.412 kb on + strand, within DZA65_RS03360 at 710.462 kb on + strand, within DZA65_RS03360 at 710.463 kb on - strand, within DZA65_RS03360 at 710.463 kb on - strand, within DZA65_RS03360 at 710.464 kb on + strand, within DZA65_RS03360 at 710.465 kb on - strand, within DZA65_RS03360 at 710.492 kb on - strand, within DZA65_RS03360 at 710.537 kb on - strand, within DZA65_RS03360 at 710.543 kb on - strand, within DZA65_RS03360
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 708,252 + DZA65_RS03345 0.48 +0.2 708,348 + DZA65_RS03345 0.59 -0.5 708,349 - DZA65_RS03345 0.59 -1.0 708,608 - DZA65_RS03345 0.86 +0.2 708,619 - DZA65_RS03345 0.88 +0.6 708,700 + -1.2 708,703 + -0.0 708,704 - +0.2 708,718 + +0.0 708,746 + -0.5 708,752 - -0.4 708,767 + -0.8 708,769 + -0.8 708,769 + -0.8 708,770 - +0.0 708,785 + -0.2 708,885 - +0.1 708,898 + -0.1 708,898 + -0.7 708,901 + +1.3 708,902 - +0.4 708,904 - -2.0 708,906 + -1.8 708,907 - +0.2 708,907 - -0.2 708,908 + +1.9 708,909 - -0.7 708,973 + -0.2 708,973 + -1.2 708,973 + +1.4 708,973 + -2.0 708,973 + -1.6 708,973 + +1.2 708,973 + -1.0 708,973 + +0.8 708,973 + -1.4 708,973 + -0.2 708,973 + -1.6 708,973 + +0.7 708,973 + +0.8 708,973 + -0.8 708,973 + -2.0 708,974 - +0.5 708,974 - +1.2 708,974 - +1.4 708,974 - -0.4 708,974 - +1.6 708,974 - -2.0 708,974 - -0.5 708,974 - +0.1 709,029 + -0.2 709,030 - +1.4 709,038 + +0.2 709,038 + -2.5 709,137 - +0.7 709,245 - DZA65_RS03355 0.12 -2.3 709,284 + DZA65_RS03355 0.22 +0.2 709,284 + DZA65_RS03355 0.22 -1.8 709,285 - DZA65_RS03355 0.22 -0.4 709,491 + DZA65_RS03355 0.78 -1.2 709,537 + +2.2 709,537 + +0.5 709,538 - -0.0 709,538 - -1.5 709,542 - +3.0 709,574 - +0.4 709,588 + -0.8 709,588 + -0.6 709,588 + +0.8 709,589 - -0.4 709,667 - +1.5 709,719 + +4.2 709,719 + -0.8 709,720 - -0.2 709,720 - -1.6 709,737 - +0.8 709,771 + +0.2 709,776 + -0.1 709,776 + -1.0 709,776 + +0.1 709,776 + -1.0 709,776 + +1.0 709,777 - -0.9 709,777 - +0.8 709,777 - -0.8 709,777 - -1.0 709,777 - -0.5 709,777 - +0.8 709,777 - -0.2 709,778 + -1.8 709,778 + +0.3 709,779 - -0.3 709,779 - -0.3 709,779 - +0.6 709,829 + +0.8 709,829 + -0.9 709,830 - -0.1 709,915 + +1.3 709,915 + +1.2 709,916 - +1.2 709,916 - -0.3 709,916 - -0.5 709,916 - -1.2 709,975 - -1.5 709,995 + -1.8 710,013 - +0.5 710,029 + DZA65_RS03360 0.10 +0.5 710,030 - DZA65_RS03360 0.10 -0.0 710,030 - DZA65_RS03360 0.10 -0.0 710,047 - DZA65_RS03360 0.12 +0.4 710,063 + DZA65_RS03360 0.13 -2.0 710,064 - DZA65_RS03360 0.13 +0.5 710,067 + DZA65_RS03360 0.14 -0.5 710,068 - DZA65_RS03360 0.14 -1.3 710,068 - DZA65_RS03360 0.14 +0.6 710,117 + DZA65_RS03360 0.18 -0.6 710,117 + DZA65_RS03360 0.18 +0.0 710,174 + DZA65_RS03360 0.23 -0.5 710,207 - DZA65_RS03360 0.26 +0.6 710,253 - DZA65_RS03360 0.30 +1.5 710,256 + DZA65_RS03360 0.31 +1.0 710,299 - DZA65_RS03360 0.35 -1.7 710,303 - DZA65_RS03360 0.35 +0.2 710,320 - DZA65_RS03360 0.36 -2.1 710,340 + DZA65_RS03360 0.38 -0.9 710,341 - DZA65_RS03360 0.38 -1.2 710,412 + DZA65_RS03360 0.45 -1.3 710,462 + DZA65_RS03360 0.49 +0.2 710,463 - DZA65_RS03360 0.49 -1.4 710,463 - DZA65_RS03360 0.49 -2.6 710,464 + DZA65_RS03360 0.49 +2.0 710,465 - DZA65_RS03360 0.49 -0.7 710,492 - DZA65_RS03360 0.52 +1.0 710,537 - DZA65_RS03360 0.56 -0.4 710,543 - DZA65_RS03360 0.56 +0.1
Or see this region's nucleotide sequence