Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03330 and DZA65_RS03335 overlap by 1 nucleotides DZA65_RS03335 and DZA65_RS03340 are separated by 2 nucleotides DZA65_RS03340 and DZA65_RS03345 are separated by 11 nucleotides
DZA65_RS03330: DZA65_RS03330 - EamA family transporter, at 705,631 to 706,563
_RS03330
DZA65_RS03335: DZA65_RS03335 - YggS family pyridoxal phosphate-dependent enzyme, at 706,563 to 707,222
_RS03335
DZA65_RS03340: DZA65_RS03340 - adenine phosphoribosyltransferase, at 707,225 to 707,785
_RS03340
DZA65_RS03345: DZA65_RS03345 - cysteine synthase family protein, at 707,797 to 708,735
_RS03345
Position (kb) 707
708 Strain fitness (log2 ratio) -2
-1
0
1
2 at 706.226 kb on - strand, within DZA65_RS03330 at 706.226 kb on - strand, within DZA65_RS03330 at 706.226 kb on - strand, within DZA65_RS03330 at 706.231 kb on + strand, within DZA65_RS03330 at 706.279 kb on + strand, within DZA65_RS03330 at 706.298 kb on - strand, within DZA65_RS03330 at 706.345 kb on + strand, within DZA65_RS03330 at 706.346 kb on - strand, within DZA65_RS03330 at 706.392 kb on + strand, within DZA65_RS03330 at 706.415 kb on - strand, within DZA65_RS03330 at 706.507 kb on - strand at 706.716 kb on + strand, within DZA65_RS03335 at 706.731 kb on - strand, within DZA65_RS03335 at 706.739 kb on + strand, within DZA65_RS03335 at 706.740 kb on - strand, within DZA65_RS03335 at 706.761 kb on + strand, within DZA65_RS03335 at 706.913 kb on + strand, within DZA65_RS03335 at 706.913 kb on + strand, within DZA65_RS03335 at 706.914 kb on - strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.936 kb on - strand, within DZA65_RS03335 at 707.061 kb on - strand, within DZA65_RS03335 at 707.189 kb on - strand at 707.189 kb on - strand at 707.207 kb on + strand at 707.276 kb on + strand at 707.276 kb on + strand at 707.346 kb on - strand, within DZA65_RS03340 at 707.385 kb on - strand, within DZA65_RS03340 at 707.431 kb on + strand, within DZA65_RS03340 at 707.436 kb on - strand, within DZA65_RS03340 at 707.467 kb on - strand, within DZA65_RS03340 at 707.518 kb on - strand, within DZA65_RS03340 at 707.530 kb on + strand, within DZA65_RS03340 at 707.532 kb on + strand, within DZA65_RS03340 at 707.551 kb on + strand, within DZA65_RS03340 at 707.555 kb on + strand, within DZA65_RS03340 at 707.654 kb on + strand, within DZA65_RS03340 at 707.655 kb on - strand at 707.666 kb on + strand, within DZA65_RS03340 at 707.667 kb on - strand, within DZA65_RS03340 at 707.691 kb on - strand, within DZA65_RS03340 at 707.750 kb on + strand at 707.840 kb on + strand at 707.840 kb on + strand at 707.893 kb on - strand, within DZA65_RS03345 at 708.004 kb on + strand, within DZA65_RS03345 at 708.071 kb on - strand, within DZA65_RS03345 at 708.252 kb on + strand, within DZA65_RS03345 at 708.348 kb on + strand, within DZA65_RS03345 at 708.349 kb on - strand, within DZA65_RS03345 at 708.608 kb on - strand, within DZA65_RS03345 at 708.619 kb on - strand, within DZA65_RS03345 at 708.700 kb on + strand at 708.703 kb on + strand at 708.704 kb on - strand at 708.718 kb on + strand at 708.746 kb on + strand at 708.752 kb on - strand at 708.767 kb on + strand at 708.769 kb on + strand at 708.769 kb on + strand at 708.770 kb on - strand at 708.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 706,226 - DZA65_RS03330 0.64 +0.5 706,226 - DZA65_RS03330 0.64 +1.2 706,226 - DZA65_RS03330 0.64 +0.8 706,231 + DZA65_RS03330 0.64 +1.4 706,279 + DZA65_RS03330 0.69 -1.6 706,298 - DZA65_RS03330 0.71 -1.3 706,345 + DZA65_RS03330 0.77 +0.2 706,346 - DZA65_RS03330 0.77 +0.6 706,392 + DZA65_RS03330 0.82 -0.2 706,415 - DZA65_RS03330 0.84 +1.7 706,507 - -1.1 706,716 + DZA65_RS03335 0.23 -2.0 706,731 - DZA65_RS03335 0.25 -0.6 706,739 + DZA65_RS03335 0.27 -1.4 706,740 - DZA65_RS03335 0.27 +0.4 706,761 + DZA65_RS03335 0.30 -0.2 706,913 + DZA65_RS03335 0.53 -1.2 706,913 + DZA65_RS03335 0.53 -0.6 706,914 - DZA65_RS03335 0.53 -1.5 706,917 + DZA65_RS03335 0.54 -0.5 706,917 + DZA65_RS03335 0.54 +2.4 706,917 + DZA65_RS03335 0.54 -2.5 706,936 - DZA65_RS03335 0.57 -2.5 707,061 - DZA65_RS03335 0.75 +0.0 707,189 - -1.3 707,189 - +0.8 707,207 + -1.5 707,276 + -2.2 707,276 + -0.2 707,346 - DZA65_RS03340 0.22 -1.3 707,385 - DZA65_RS03340 0.29 -0.0 707,431 + DZA65_RS03340 0.37 -1.0 707,436 - DZA65_RS03340 0.38 -1.8 707,467 - DZA65_RS03340 0.43 -2.2 707,518 - DZA65_RS03340 0.52 +1.8 707,530 + DZA65_RS03340 0.54 -0.1 707,532 + DZA65_RS03340 0.55 -0.6 707,551 + DZA65_RS03340 0.58 +0.8 707,555 + DZA65_RS03340 0.59 -0.8 707,654 + DZA65_RS03340 0.76 +0.2 707,655 - +0.6 707,666 + DZA65_RS03340 0.79 -2.4 707,667 - DZA65_RS03340 0.79 -1.2 707,691 - DZA65_RS03340 0.83 +0.6 707,750 + -1.6 707,840 + -0.0 707,840 + -0.8 707,893 - DZA65_RS03345 0.10 +0.6 708,004 + DZA65_RS03345 0.22 -0.8 708,071 - DZA65_RS03345 0.29 +0.1 708,252 + DZA65_RS03345 0.48 +0.2 708,348 + DZA65_RS03345 0.59 -0.5 708,349 - DZA65_RS03345 0.59 -1.0 708,608 - DZA65_RS03345 0.86 +0.2 708,619 - DZA65_RS03345 0.88 +0.6 708,700 + -1.2 708,703 + -0.0 708,704 - +0.2 708,718 + +0.0 708,746 + -0.5 708,752 - -0.4 708,767 + -0.8 708,769 + -0.8 708,769 + -0.8 708,770 - +0.0 708,785 + -0.2
Or see this region's nucleotide sequence