Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02885 and DZA65_RS02890 are separated by 109 nucleotides DZA65_RS02890 and DZA65_RS02895 are separated by 175 nucleotides DZA65_RS02895 and DZA65_RS02900 are separated by 131 nucleotides DZA65_RS02900 and DZA65_RS02905 are separated by 109 nucleotides
DZA65_RS02885: DZA65_RS02885 - diacylglycerol kinase, at 620,664 to 621,029
_RS02885
DZA65_RS02890: DZA65_RS02890 - repressor LexA, at 621,139 to 621,750
_RS02890
DZA65_RS02895: DZA65_RS02895 - zinc uptake transcriptional repressor Zur, at 621,926 to 622,435
_RS02895
DZA65_RS02900: DZA65_RS02900 - pirin family protein, at 622,567 to 623,277
_RS02900
DZA65_RS02905: DZA65_RS02905 - LysR family transcriptional regulator, at 623,387 to 624,283
_RS02905
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 621.040 kb on - strand at 621.040 kb on - strand at 621.097 kb on + strand at 621.098 kb on - strand at 621.098 kb on - strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.100 kb on - strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.749 kb on - strand at 621.749 kb on - strand at 621.749 kb on - strand at 621.761 kb on + strand at 621.761 kb on + strand at 621.762 kb on - strand at 621.793 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.891 kb on - strand at 621.903 kb on + strand at 621.961 kb on + strand at 621.961 kb on + strand at 621.961 kb on + strand at 621.962 kb on - strand at 621.962 kb on - strand at 621.962 kb on - strand at 622.033 kb on + strand, within DZA65_RS02895 at 622.033 kb on + strand, within DZA65_RS02895 at 622.033 kb on + strand, within DZA65_RS02895 at 622.034 kb on - strand, within DZA65_RS02895 at 622.034 kb on - strand at 622.034 kb on - strand at 622.034 kb on - strand, within DZA65_RS02895 at 622.034 kb on - strand, within DZA65_RS02895 at 622.074 kb on - strand, within DZA65_RS02895 at 622.074 kb on - strand, within DZA65_RS02895 at 622.132 kb on + strand, within DZA65_RS02895 at 622.132 kb on + strand, within DZA65_RS02895 at 622.132 kb on + strand, within DZA65_RS02895 at 622.133 kb on - strand, within DZA65_RS02895 at 622.133 kb on - strand, within DZA65_RS02895 at 622.133 kb on - strand at 622.133 kb on - strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.148 kb on - strand, within DZA65_RS02895 at 622.153 kb on + strand, within DZA65_RS02895 at 622.153 kb on + strand, within DZA65_RS02895 at 622.182 kb on + strand, within DZA65_RS02895 at 622.182 kb on + strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.186 kb on + strand, within DZA65_RS02895 at 622.186 kb on + strand, within DZA65_RS02895 at 622.211 kb on - strand, within DZA65_RS02895 at 622.302 kb on + strand, within DZA65_RS02895 at 622.477 kb on + strand at 622.478 kb on - strand at 622.478 kb on - strand at 622.478 kb on - strand at 622.490 kb on + strand at 622.491 kb on - strand at 622.568 kb on + strand at 622.582 kb on + strand at 622.582 kb on + strand at 622.583 kb on - strand at 622.583 kb on - strand at 622.620 kb on + strand at 622.620 kb on + strand at 622.620 kb on + strand at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.664 kb on - strand, within DZA65_RS02900 at 622.664 kb on - strand, within DZA65_RS02900 at 622.664 kb on - strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.667 kb on - strand, within DZA65_RS02900 at 622.667 kb on - strand, within DZA65_RS02900 at 622.667 kb on - strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.727 kb on - strand at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.731 kb on - strand, within DZA65_RS02900 at 622.731 kb on - strand, within DZA65_RS02900 at 622.731 kb on - strand, within DZA65_RS02900 at 622.758 kb on + strand, within DZA65_RS02900 at 622.758 kb on + strand, within DZA65_RS02900 at 622.759 kb on - strand, within DZA65_RS02900 at 622.759 kb on - strand, within DZA65_RS02900 at 622.856 kb on + strand, within DZA65_RS02900 at 622.857 kb on - strand, within DZA65_RS02900 at 622.977 kb on - strand, within DZA65_RS02900 at 623.005 kb on + strand, within DZA65_RS02900 at 623.031 kb on + strand, within DZA65_RS02900 at 623.031 kb on + strand, within DZA65_RS02900 at 623.054 kb on + strand, within DZA65_RS02900 at 623.055 kb on - strand, within DZA65_RS02900 at 623.055 kb on - strand, within DZA65_RS02900 at 623.102 kb on + strand, within DZA65_RS02900 at 623.176 kb on + strand, within DZA65_RS02900 at 623.177 kb on - strand, within DZA65_RS02900 at 623.177 kb on - strand, within DZA65_RS02900 at 623.177 kb on - strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.193 kb on - strand, within DZA65_RS02900 at 623.193 kb on - strand, within DZA65_RS02900 at 623.213 kb on + strand at 623.213 kb on + strand at 623.213 kb on + strand at 623.214 kb on - strand at 623.214 kb on - strand at 623.234 kb on + strand at 623.268 kb on + strand at 623.281 kb on - strand at 623.281 kb on - strand at 623.297 kb on + strand at 623.298 kb on - strand at 623.298 kb on - strand at 623.303 kb on + strand at 623.303 kb on + strand at 623.304 kb on - strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.412 kb on + strand at 623.412 kb on + strand at 623.412 kb on + strand at 623.413 kb on - strand at 623.413 kb on - strand at 623.413 kb on - strand at 623.421 kb on + strand at 623.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 621,040 - -1.7 621,040 - +1.5 621,097 + -0.0 621,098 - +0.6 621,098 - -0.1 621,099 + -0.3 621,099 + -1.5 621,099 + +1.9 621,099 + -0.7 621,099 + +0.7 621,100 - +1.6 621,101 + +0.0 621,101 + -0.0 621,101 + +0.7 621,101 + -1.2 621,748 + -0.1 621,748 + -1.1 621,748 + +0.7 621,748 + -0.1 621,748 + -1.5 621,748 + +1.3 621,748 + +0.5 621,749 - -1.1 621,749 - -0.1 621,749 - -0.5 621,761 + -1.5 621,761 + +1.1 621,762 - -0.8 621,793 + -1.0 621,890 + +0.5 621,890 + +0.4 621,890 + +1.3 621,890 + +0.3 621,890 + +1.4 621,891 - -2.0 621,903 + +0.4 621,961 + -0.3 621,961 + +1.0 621,961 + -0.1 621,962 - -1.7 621,962 - +1.2 621,962 - +0.0 622,033 + DZA65_RS02895 0.21 -0.1 622,033 + DZA65_RS02895 0.21 +1.4 622,033 + DZA65_RS02895 0.21 +0.6 622,034 - DZA65_RS02895 0.21 -0.1 622,034 - -0.1 622,034 - -0.1 622,034 - DZA65_RS02895 0.21 -1.1 622,034 - DZA65_RS02895 0.21 +0.3 622,074 - DZA65_RS02895 0.29 +0.9 622,074 - DZA65_RS02895 0.29 +0.1 622,132 + DZA65_RS02895 0.40 +0.4 622,132 + DZA65_RS02895 0.40 -0.1 622,132 + DZA65_RS02895 0.40 +0.3 622,133 - DZA65_RS02895 0.41 -0.6 622,133 - DZA65_RS02895 0.41 -0.3 622,133 - +0.3 622,133 - DZA65_RS02895 0.41 -0.3 622,147 + DZA65_RS02895 0.43 +0.4 622,147 + DZA65_RS02895 0.43 -0.3 622,147 + DZA65_RS02895 0.43 +0.3 622,147 + DZA65_RS02895 0.43 +0.4 622,147 + DZA65_RS02895 0.43 +2.1 622,147 + DZA65_RS02895 0.43 +0.9 622,148 - DZA65_RS02895 0.44 +0.4 622,153 + DZA65_RS02895 0.45 +0.2 622,153 + DZA65_RS02895 0.45 +1.0 622,182 + DZA65_RS02895 0.50 -0.4 622,182 + DZA65_RS02895 0.50 -0.7 622,183 - DZA65_RS02895 0.50 +0.8 622,183 - DZA65_RS02895 0.50 -0.1 622,183 - DZA65_RS02895 0.50 -0.7 622,183 - DZA65_RS02895 0.50 -1.7 622,183 - DZA65_RS02895 0.50 -0.7 622,186 + DZA65_RS02895 0.51 +1.6 622,186 + DZA65_RS02895 0.51 -1.0 622,211 - DZA65_RS02895 0.56 -0.1 622,302 + DZA65_RS02895 0.74 -0.2 622,477 + +0.5 622,478 - -0.1 622,478 - +0.1 622,478 - +0.0 622,490 + +0.3 622,491 - -0.5 622,568 + +1.9 622,582 + -3.0 622,582 + -2.0 622,583 - +1.3 622,583 - +0.4 622,620 + -2.8 622,620 + -0.7 622,620 + -0.3 622,663 + DZA65_RS02900 0.14 +0.6 622,663 + DZA65_RS02900 0.14 -1.7 622,663 + DZA65_RS02900 0.14 +2.9 622,663 + DZA65_RS02900 0.14 +0.1 622,663 + DZA65_RS02900 0.14 +0.9 622,664 - DZA65_RS02900 0.14 -1.0 622,664 - DZA65_RS02900 0.14 +0.3 622,664 - DZA65_RS02900 0.14 -0.5 622,666 + DZA65_RS02900 0.14 +0.0 622,666 + DZA65_RS02900 0.14 -1.1 622,666 + DZA65_RS02900 0.14 -1.5 622,666 + DZA65_RS02900 0.14 -1.5 622,667 - DZA65_RS02900 0.14 +0.1 622,667 - DZA65_RS02900 0.14 -0.1 622,667 - DZA65_RS02900 0.14 +2.0 622,726 + DZA65_RS02900 0.22 -1.1 622,726 + DZA65_RS02900 0.22 -0.1 622,726 + DZA65_RS02900 0.22 -0.4 622,726 + DZA65_RS02900 0.22 -2.6 622,726 + DZA65_RS02900 0.22 +0.3 622,726 + DZA65_RS02900 0.22 +0.0 622,726 + DZA65_RS02900 0.22 +0.3 622,726 + DZA65_RS02900 0.22 -2.4 622,727 - -0.1 622,727 - DZA65_RS02900 0.23 +0.6 622,727 - DZA65_RS02900 0.23 -0.5 622,727 - DZA65_RS02900 0.23 -1.1 622,727 - DZA65_RS02900 0.23 -0.7 622,727 - DZA65_RS02900 0.23 +1.2 622,727 - DZA65_RS02900 0.23 -0.1 622,727 - DZA65_RS02900 0.23 -0.4 622,727 - DZA65_RS02900 0.23 -1.7 622,730 + DZA65_RS02900 0.23 -0.4 622,730 + DZA65_RS02900 0.23 +0.1 622,730 + DZA65_RS02900 0.23 +1.9 622,730 + DZA65_RS02900 0.23 +1.3 622,730 + DZA65_RS02900 0.23 +1.9 622,730 + DZA65_RS02900 0.23 +0.9 622,731 - DZA65_RS02900 0.23 +0.9 622,731 - DZA65_RS02900 0.23 +0.9 622,731 - DZA65_RS02900 0.23 -1.6 622,758 + DZA65_RS02900 0.27 -0.4 622,758 + DZA65_RS02900 0.27 -0.7 622,759 - DZA65_RS02900 0.27 +0.6 622,759 - DZA65_RS02900 0.27 +0.9 622,856 + DZA65_RS02900 0.41 +0.3 622,857 - DZA65_RS02900 0.41 +0.1 622,977 - DZA65_RS02900 0.58 -0.3 623,005 + DZA65_RS02900 0.62 -0.3 623,031 + DZA65_RS02900 0.65 +0.1 623,031 + DZA65_RS02900 0.65 -0.4 623,054 + DZA65_RS02900 0.68 -0.6 623,055 - DZA65_RS02900 0.69 +0.6 623,055 - DZA65_RS02900 0.69 -1.0 623,102 + DZA65_RS02900 0.75 -1.0 623,176 + DZA65_RS02900 0.86 -0.1 623,177 - DZA65_RS02900 0.86 +0.6 623,177 - DZA65_RS02900 0.86 +0.2 623,177 - DZA65_RS02900 0.86 +2.0 623,192 + DZA65_RS02900 0.88 -1.2 623,192 + DZA65_RS02900 0.88 +0.9 623,192 + DZA65_RS02900 0.88 +0.9 623,192 + DZA65_RS02900 0.88 +0.6 623,192 + DZA65_RS02900 0.88 -0.7 623,192 + DZA65_RS02900 0.88 -1.0 623,192 + DZA65_RS02900 0.88 +1.1 623,193 - DZA65_RS02900 0.88 +1.3 623,193 - DZA65_RS02900 0.88 -1.3 623,213 + +1.0 623,213 + -0.8 623,213 + -0.5 623,214 - -0.1 623,214 - -1.0 623,234 + -1.6 623,268 + +0.7 623,281 - -0.6 623,281 - -0.5 623,297 + -0.4 623,298 - +0.9 623,298 - -1.6 623,303 + -1.6 623,303 + -0.5 623,304 - +1.3 623,314 + -1.7 623,314 + -0.1 623,314 + +0.3 623,314 + +2.9 623,314 + -0.3 623,314 + +0.9 623,314 + +1.1 623,314 + +0.4 623,314 + -0.8 623,315 - +0.9 623,315 - +0.9 623,315 - -0.6 623,315 - +0.0 623,315 - -2.0 623,315 - -1.8 623,315 - -0.6 623,412 + -0.4 623,412 + -0.7 623,412 + -0.5 623,413 - +0.9 623,413 - -2.6 623,413 - -0.5 623,421 + -0.8 623,422 - -1.3
Or see this region's nucleotide sequence