Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00335

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Atlantic
				remove
80,976	+	DZA65_RS00330	0.24	+0.7
80,976	+	DZA65_RS00330	0.24	+0.3
80,976	+	DZA65_RS00330	0.24	-0.2
80,976	+	DZA65_RS00330	0.24	-1.1
80,976	+	DZA65_RS00330	0.24	-0.2
80,976	+	DZA65_RS00330	0.24	+0.2
80,976	+	DZA65_RS00330	0.24	+1.8
80,976	+	DZA65_RS00330	0.24	-2.8
80,976	+	DZA65_RS00330	0.24	+1.0
80,976	+	DZA65_RS00330	0.24	+0.4
80,976	+	DZA65_RS00330	0.24	-0.6
80,976	+	DZA65_RS00330	0.24	-1.2
80,976	+	DZA65_RS00330	0.24	-1.1
80,977	-	DZA65_RS00330	0.24	+0.4
80,977	-	DZA65_RS00330	0.24	+0.8
80,977	-	DZA65_RS00330	0.24	+0.2
80,977	-	DZA65_RS00330	0.24	-0.3
80,977	-	DZA65_RS00330	0.24	+0.1
80,977	-	DZA65_RS00330	0.24	-1.1
80,977	-	DZA65_RS00330	0.24	-0.3
80,977	-	DZA65_RS00330	0.24	+0.1
80,977	-	DZA65_RS00330	0.24	-0.3
80,977	-	DZA65_RS00330	0.24	-0.6
80,977	-	DZA65_RS00330	0.24	-0.6
80,977	-	DZA65_RS00330	0.24	+0.3
80,977	-	DZA65_RS00330	0.24	-0.2
80,977	-	DZA65_RS00330	0.24	-1.6
80,977	-	DZA65_RS00330	0.24	+1.3
80,977	-	DZA65_RS00330	0.24	+0.9
80,977	-	DZA65_RS00330	0.24	-0.1
80,994	+	DZA65_RS00330	0.25	-1.3
80,994	+	DZA65_RS00330	0.25	-0.6
80,994	+	DZA65_RS00330	0.25	-1.3
80,994	+	DZA65_RS00330	0.25	+0.6
80,994	+	DZA65_RS00330	0.25	-0.3
80,995	-	DZA65_RS00330	0.25	+0.3
80,995	-	DZA65_RS00330	0.25	+1.4
80,995	-	DZA65_RS00330	0.25	-0.8
80,995	-	DZA65_RS00330	0.25	+0.2
80,995	-	DZA65_RS00330	0.25	-2.0
81,032	+	DZA65_RS00330	0.28	+1.8
81,032	+	DZA65_RS00330	0.28	-2.1
81,032	+	DZA65_RS00330	0.28	+0.1
81,138	+	DZA65_RS00330	0.37	-0.6
81,153	+	DZA65_RS00330	0.38	-0.1
81,153	+	DZA65_RS00330	0.38	-1.1
81,153	+	DZA65_RS00330	0.38	+1.6
81,153	+	DZA65_RS00330	0.38	-0.8
81,153	+	DZA65_RS00330	0.38	-1.0
81,153	+	DZA65_RS00330	0.38	-0.4
81,153	+	DZA65_RS00330	0.38	+1.7
81,154	-	DZA65_RS00330	0.38	-0.4
81,154	-	DZA65_RS00330	0.38	-0.4
81,154	-	DZA65_RS00330	0.38	-1.0
81,154	-	DZA65_RS00330	0.38	-0.6
81,154	-	DZA65_RS00330	0.38	+1.3
81,189	+	DZA65_RS00330	0.41	-0.1
81,190	-	DZA65_RS00330	0.41	+0.7
81,190	-	DZA65_RS00330	0.41	+0.2
81,190	-	DZA65_RS00330	0.41	-1.8
81,190	-	DZA65_RS00330	0.41	+0.3
81,190	-	DZA65_RS00330	0.41	+1.8
81,322	+	DZA65_RS00330	0.52	-1.3
81,322	+	DZA65_RS00330	0.52	+0.3
81,322	+	DZA65_RS00330	0.52	+2.0
81,322	+	DZA65_RS00330	0.52	+2.0
81,322	+	DZA65_RS00330	0.52	+0.0
81,322	+	DZA65_RS00330	0.52	+0.0
81,323	-	DZA65_RS00330	0.52	-0.6
81,323	-	DZA65_RS00330	0.52	+0.2
81,323	-	DZA65_RS00330	0.52	-1.1
81,323	-	DZA65_RS00330	0.52	-1.4
81,323	-	DZA65_RS00330	0.52	+0.8
81,323	-	DZA65_RS00330	0.52	+1.2
81,323	-	DZA65_RS00330	0.52	+2.3
81,323	-	DZA65_RS00330	0.52	-0.3
81,323	-	DZA65_RS00330	0.52	+0.0
81,361	-	DZA65_RS00330	0.55	-0.8
81,532	+	DZA65_RS00330	0.69	+2.6
81,532	+	DZA65_RS00330	0.69	-1.3
81,532	+	DZA65_RS00330	0.69	+0.3
81,532	+	DZA65_RS00330	0.69	-2.0
81,532	+	DZA65_RS00330	0.69	-1.8
81,532	+	DZA65_RS00330	0.69	+1.0
81,532	+	DZA65_RS00330	0.69	+0.2
81,533	-	DZA65_RS00330	0.69	-0.7
81,533	-	DZA65_RS00330	0.69	+0.6
81,533	-	DZA65_RS00330	0.69	+0.4
81,533	-	DZA65_RS00330	0.69	+0.4
81,533	-	DZA65_RS00330	0.69	+1.0
81,584	+	DZA65_RS00330	0.73	-0.4
81,585	-	DZA65_RS00330	0.74	+0.6
81,585	-	DZA65_RS00330	0.74	-1.6
81,585	-	DZA65_RS00330	0.74	-0.3
81,721	+	DZA65_RS00330	0.85	-1.8
81,721	+	DZA65_RS00330	0.85	-0.6
81,721	+	DZA65_RS00330	0.85	+0.7
81,721	+	DZA65_RS00330	0.85	-0.6
81,721	+	DZA65_RS00330	0.85	-1.7
81,721	+	DZA65_RS00330	0.85	-0.3
81,722	-	DZA65_RS00330	0.85	+0.2
81,722	-	DZA65_RS00330	0.85	+1.5
81,722	-	DZA65_RS00330	0.85	-1.6
81,722	-	DZA65_RS00330	0.85	+0.4
81,722	-	DZA65_RS00330	0.85	-1.6
81,722	-	DZA65_RS00330	0.85	-0.5
81,731	+	DZA65_RS00330	0.85	-2.4
81,731	+	DZA65_RS00330	0.85	-0.1
81,731	+	DZA65_RS00330	0.85	-1.6
81,731	+	DZA65_RS00330	0.85	+0.0
81,731	+	DZA65_RS00330	0.85	-1.3
81,732	-	DZA65_RS00330	0.86	-0.4
81,732	-	DZA65_RS00330	0.86	-0.0
81,786	+			+0.4
81,786	+			+0.4
81,792	+			+1.0
81,793	-			-0.1
81,814	-			-2.0
81,846	+			+1.5
81,846	+			+0.7
81,846	+			+0.9
81,847	-			-0.3
81,894	+			+0.0
81,895	-			-0.7
81,900	-			+2.7
81,900	-			-0.1
81,947	+			-0.9
81,947	+			-0.5
81,948	-			+1.3
81,948	-			+0.3
81,948	-			-2.0
81,948	-			+1.0
81,970	-			-0.1
81,975	+			-0.7
81,976	-			-0.1
81,976	-			+0.6
81,976	-			+1.2
81,978	+			-1.3
81,978	+			-0.3
81,978	+			+0.5
81,978	+			+0.3
81,978	+			-1.3
81,978	+			-1.4
81,978	+			+0.1
81,978	+			-0.6
81,978	+			-0.3
81,978	+			-0.6
81,979	-			+1.3
81,979	-			+0.3
81,979	-			+0.0
81,979	-			+0.0
81,979	-			-2.7
81,979	-			+1.2
81,979	-			+0.4
81,979	-			-0.6
81,979	-			-2.3
81,979	-			+0.6
81,979	-			-2.0
81,979	-			-0.3
81,982	+			+0.7
81,982	+			-0.2
81,982	+			+0.4
81,982	+			+0.3
81,982	+			-0.7
81,982	+			-1.0
81,982	+			-0.6
81,982	+			+0.2
81,982	+			+1.4
81,982	+			+1.3
81,982	+			+1.0
81,982	+			+0.0
81,982	+			+1.4
81,982	+			-0.6
81,982	+			-0.1
81,982	+			+2.0
81,982	+			-1.0
81,982	+			-1.8
81,982	+			-2.4
81,982	+			-2.4
81,982	+			+0.4
81,982	+			-1.3
81,982	+			+0.2
81,982	+			-0.1
81,983	-			+0.6
81,983	-			+0.2
81,983	-			-1.1
81,983	-			+2.0
81,983	-			-0.2
81,983	-			+1.2
81,983	-			+1.2
81,983	-			+0.1
81,983	-			-0.3
81,983	-			-1.0
81,983	-			+0.3
81,983	-			+1.8
81,983	-			-0.5
81,983	-			-1.3
81,983	-			-0.3
81,983	-			+0.5
82,116	+	DZA65_RS00335	0.29	+0.0
82,116	+	DZA65_RS00335	0.29	-2.0
82,116	+	DZA65_RS00335	0.29	-1.4
82,116	+	DZA65_RS00335	0.29	-0.3
82,116	+	DZA65_RS00335	0.29	-1.3
82,116	+	DZA65_RS00335	0.29	-1.3
82,116	+	DZA65_RS00335	0.29	-0.1
82,116	+	DZA65_RS00335	0.29	-1.8
82,116	+	DZA65_RS00335	0.29	-2.1
82,116	+	DZA65_RS00335	0.29	+0.8
82,116	+	DZA65_RS00335	0.29	-1.2
82,116	+	DZA65_RS00335	0.29	+0.1
82,116	+	DZA65_RS00335	0.29	+1.0
82,117	-	DZA65_RS00335	0.29	-1.8
82,117	-	DZA65_RS00335	0.29	+0.4
82,117	-	DZA65_RS00335	0.29	-1.3
82,117	-	DZA65_RS00335	0.29	-0.4
82,117	-	DZA65_RS00335	0.29	-1.3
82,117	-	DZA65_RS00335	0.29	-1.6
82,117	-	DZA65_RS00335	0.29	+0.1
82,117	-	DZA65_RS00335	0.29	+0.0
82,117	-	DZA65_RS00335	0.29	+2.0
82,161	+	DZA65_RS00335	0.37	-2.1
82,161	+	DZA65_RS00335	0.37	-0.7
82,162	-	DZA65_RS00335	0.37	+0.1
82,162	-	DZA65_RS00335	0.37	-1.6
82,162	-	DZA65_RS00335	0.37	-0.6
82,162	-	DZA65_RS00335	0.37	-0.2
82,162	-	DZA65_RS00335	0.37	+0.5
82,258	+	DZA65_RS00335	0.53	+0.1
82,259	-	DZA65_RS00335	0.54	+0.8
82,345	+	DZA65_RS00335	0.69	-0.8
82,345	+	DZA65_RS00335	0.69	-0.4
82,345	+	DZA65_RS00335	0.69	-0.7
82,345	+	DZA65_RS00335	0.69	-1.9
82,345	+	DZA65_RS00335	0.69	-2.1
82,345	+	DZA65_RS00335	0.69	+0.7
82,345	+	DZA65_RS00335	0.69	-0.6
82,345	+	DZA65_RS00335	0.69	+1.2
82,345	+	DZA65_RS00335	0.69	-0.3
82,346	-	DZA65_RS00335	0.69	-0.8
82,346	-	DZA65_RS00335	0.69	+0.3
82,346	-	DZA65_RS00335	0.69	-0.7
82,346	-	DZA65_RS00335	0.69	-0.7
82,346	-	DZA65_RS00335	0.69	-2.4
82,346	-	DZA65_RS00335	0.69	+0.4
82,346	-	DZA65_RS00335	0.69	+0.0
82,346	-	DZA65_RS00335	0.69	-0.7
82,346	-	DZA65_RS00335	0.69	-0.2
82,381	+	DZA65_RS00335	0.75	-1.1
82,384	+	DZA65_RS00335	0.75	+0.1
82,384	+	DZA65_RS00335	0.75	-0.6
82,384	+	DZA65_RS00335	0.75	+0.0
82,384	+	DZA65_RS00335	0.75	-1.0
82,384	+	DZA65_RS00335	0.75	-2.3
82,385	-	DZA65_RS00335	0.76	-0.6
82,385	-	DZA65_RS00335	0.76	-0.6
82,389	+	DZA65_RS00335	0.76	+0.0
82,389	+	DZA65_RS00335	0.76	-0.6
82,390	-	DZA65_RS00335	0.76	-0.8
82,390	-	DZA65_RS00335	0.76	+0.7
82,390	-	DZA65_RS00335	0.76	+0.8
82,468	+			+0.0
82,468	+			+0.0
82,469	-			+0.7
82,469	-			+0.6
82,469	-			+0.0
82,528	+			-0.6
82,528	+			+1.3
82,528	+			-1.3
82,528	+			+0.5
82,528	+			+0.2
82,528	+			+1.3
82,528	+			+0.0
82,529	-			-0.3
82,529	-			+0.5
82,529	-			+0.0
82,529	-			-0.8
82,529	-			-0.0
82,529	-			+0.0
82,529	-			-0.5
82,574	+			+0.5
82,574	+			+0.6
82,613	-			-0.9
82,631	+			-1.0
82,661	+			-0.6
82,661	+			+1.6
82,662	-			+0.2
82,671	+			+0.6
82,671	+			+0.5
82,671	+			-1.7
82,671	+			-0.8
82,671	+			-0.6
82,671	+			+1.3
82,671	+			+0.7
82,671	+			-0.4
82,671	+			+0.3
82,672	-			-2.3
82,672	-			-0.0
82,672	-			+0.0
82,672	-			+1.3
82,672	-			-0.8
82,672	-			+0.8
82,672	-			+0.7
82,672	-			-0.1
82,672	-			-1.8
82,672	-			+0.2
82,672	-			+0.3
82,672	-			+0.2
82,672	-			-0.6
82,672	-			-0.8
82,672	-			-0.6
82,672	-			-0.1
82,673	+			-0.3
82,673	+			+0.4
82,673	+			+0.4
82,673	+			-0.9
82,673	+			-1.0
82,673	+			+3.6
82,673	+			+2.2
82,673	+			+2.0
82,673	+			-2.1
82,673	+			-0.1
82,673	+			-1.2
82,673	+			-0.4
82,673	+			-1.6
82,673	+			-0.6
82,673	+			-1.7
82,674	-			-0.4
82,674	-			-0.2
82,674	-			+0.0
82,674	-			-0.2
82,674	-			-0.0
82,674	-			-1.0
82,674	-			+0.5
82,674	-			-0.2
82,692	+			+0.4
82,692	+			+1.8
82,692	+			+0.9
82,693	-			+0.0
82,693	-			+0.1
82,693	-			+0.3
82,693	-			+0.8
82,693	-			-2.3
82,699	+			+0.8
82,699	+			+0.4
82,699	+			-0.0
82,699	+			-0.9
82,699	+			-0.3
82,700	-			-0.5
82,700	-			-1.3
82,706	+			+1.3
82,706	+			-0.1
82,706	+			-1.0
82,706	+			+0.3
82,706	+			+0.5
82,707	-			-0.4
82,707	-			+1.3
82,707	-			-0.6
82,707	-			+1.0
82,707	-			-1.4
82,720	+			+3.0
82,720	+			+2.2
82,720	+			-0.6
82,720	+			-0.6
82,721	-			-1.0
82,721	-			-2.4
82,721	-			+0.7
82,721	-			+1.0
82,721	-			+2.8
82,727	+			-1.3
82,727	+			-0.6
82,727	+			-0.3
82,727	+			+0.2
82,727	+			-0.8
82,727	+			+1.4
82,727	+			-0.6
82,727	+			+1.3
82,727	+			+1.2
82,727	+			-0.5
82,727	+			+0.4
82,728	-			-1.3
82,728	-			+1.0
82,728	-			-0.9
82,728	-			-0.4
82,728	-			-0.6
82,728	-			+0.6
82,728	-			-0.2
82,728	-			-0.4
82,729	+			-2.0
82,729	+			+0.3
82,729	+			-0.8
82,729	+			-0.2
82,729	+			-2.2
82,729	+			+0.0
82,729	+			+0.4
82,729	+			-0.7
82,729	+			-0.6
82,729	+			-1.0
82,729	+			-1.0
82,729	+			+0.2
82,729	+			+0.0
82,729	+			+0.5
82,730	-			-0.2
82,730	-			-0.3
82,730	-			-0.3
82,730	-			+0.4
82,730	-			+0.3
82,730	-			-2.4
82,730	-			-0.2
82,730	-			+0.2
82,730	-			+0.6
82,730	-			-0.5
82,730	-			-0.3
82,988	+			-1.5
83,034	+			+0.0
83,035	-			+0.1
83,039	+			+1.9
83,053	+			+0.3
83,053	+			+1.0
83,053	+			-0.7
83,054	-			-1.8
83,092	+			+0.7
83,092	+			+0.7
83,093	-			-0.6
83,093	-			+2.6
83,096	+			+0.3
83,096	+			+0.9
83,096	+			+2.3
83,096	+			+0.0
83,096	+			-0.6
83,097	-			-0.0
83,097	-			-0.3
83,097	-			+0.0
83,210	+	DZA65_RS00345	0.13	-0.3
83,210	+	DZA65_RS00345	0.13	+0.4
83,210	+	DZA65_RS00345	0.13	+0.1
83,210	+	DZA65_RS00345	0.13	-0.4
83,210	+	DZA65_RS00345	0.13	+0.2
83,211	-	DZA65_RS00345	0.13	+2.2
83,211	-	DZA65_RS00345	0.13	+2.6
83,211	-	DZA65_RS00345	0.13	+0.3
83,211	-	DZA65_RS00345	0.13	-0.2
83,211	-	DZA65_RS00345	0.13	-1.3
83,211	-	DZA65_RS00345	0.13	-1.3
83,211	-	DZA65_RS00345	0.13	-1.0
83,211	-	DZA65_RS00345	0.13	-0.1
83,226	-	DZA65_RS00345	0.14	+0.5
83,292	-	DZA65_RS00345	0.22	-0.6
83,328	+	DZA65_RS00345	0.26	-0.6
83,328	+	DZA65_RS00345	0.26	+3.0
83,328	+	DZA65_RS00345	0.26	-0.9
83,328	+	DZA65_RS00345	0.26	-0.2
83,328	+	DZA65_RS00345	0.26	+0.7
83,328	+	DZA65_RS00345	0.26	-0.7
83,328	+	DZA65_RS00345	0.26	+1.3
83,329	-	DZA65_RS00345	0.26	+1.6
83,329	-	DZA65_RS00345	0.26	+0.1
83,329	-	DZA65_RS00345	0.26	-0.4
83,329	-	DZA65_RS00345	0.26	-0.6
83,329	-	DZA65_RS00345	0.26	+3.3
83,329	-	DZA65_RS00345	0.26	+0.6
83,426	+	DZA65_RS00345	0.37	+1.4
83,427	-	DZA65_RS00345	0.37	+0.5
83,465	+	DZA65_RS00345	0.41	-0.7
83,465	+	DZA65_RS00345	0.41	+0.7
83,465	+	DZA65_RS00345	0.41	+0.4
83,466	-	DZA65_RS00345	0.41	-1.3

Or see this region's nucleotide sequence