Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00295 and DZA65_RS00300 are separated by 78 nucleotides DZA65_RS00300 and DZA65_RS00310 are separated by 303 nucleotides
DZA65_RS00295: DZA65_RS00295 - aldehyde dehydrogenase, at 71,531 to 73,066
_RS00295
DZA65_RS00300: DZA65_RS00300 - xylulokinase, at 73,145 to 74,605
_RS00300
DZA65_RS00310: DZA65_RS00310 - xylose isomerase, at 74,909 to 76,228
_RS00310
Position (kb) 73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.222 kb on - strand, within DZA65_RS00295 at 72.297 kb on - strand, within DZA65_RS00295 at 72.352 kb on + strand, within DZA65_RS00295 at 72.352 kb on + strand, within DZA65_RS00295 at 72.353 kb on - strand, within DZA65_RS00295 at 72.353 kb on - strand, within DZA65_RS00295 at 72.353 kb on - strand, within DZA65_RS00295 at 72.448 kb on + strand, within DZA65_RS00295 at 72.448 kb on + strand, within DZA65_RS00295 at 72.448 kb on + strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.486 kb on - strand, within DZA65_RS00295 at 72.486 kb on - strand, within DZA65_RS00295 at 72.486 kb on - strand, within DZA65_RS00295 at 72.576 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.693 kb on - strand, within DZA65_RS00295 at 72.693 kb on - strand, within DZA65_RS00295 at 72.695 kb on + strand, within DZA65_RS00295 at 72.695 kb on + strand, within DZA65_RS00295 at 72.695 kb on + strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand at 72.920 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.971 kb on - strand at 73.007 kb on + strand at 73.008 kb on - strand at 73.037 kb on + strand at 73.038 kb on - strand at 73.038 kb on - strand at 73.064 kb on + strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.123 kb on + strand at 73.173 kb on + strand at 73.173 kb on + strand at 73.174 kb on - strand at 73.174 kb on - strand at 73.174 kb on - strand at 73.266 kb on - strand at 73.353 kb on + strand, within DZA65_RS00300 at 73.354 kb on - strand, within DZA65_RS00300 at 73.376 kb on - strand at 73.588 kb on + strand, within DZA65_RS00300 at 73.588 kb on + strand, within DZA65_RS00300 at 73.588 kb on + strand, within DZA65_RS00300 at 73.588 kb on + strand at 73.589 kb on - strand, within DZA65_RS00300 at 73.589 kb on - strand, within DZA65_RS00300 at 73.589 kb on - strand, within DZA65_RS00300 at 73.605 kb on + strand, within DZA65_RS00300 at 73.606 kb on - strand at 73.830 kb on + strand, within DZA65_RS00300 at 73.831 kb on - strand, within DZA65_RS00300 at 73.875 kb on + strand, within DZA65_RS00300 at 73.875 kb on + strand, within DZA65_RS00300 at 74.024 kb on + strand, within DZA65_RS00300 at 74.024 kb on + strand, within DZA65_RS00300 at 74.024 kb on + strand, within DZA65_RS00300 at 74.025 kb on - strand, within DZA65_RS00300 at 74.142 kb on + strand, within DZA65_RS00300 at 74.143 kb on - strand, within DZA65_RS00300 at 74.201 kb on + strand, within DZA65_RS00300 at 74.202 kb on - strand, within DZA65_RS00300 at 74.225 kb on - strand, within DZA65_RS00300 at 74.270 kb on + strand, within DZA65_RS00300 at 74.270 kb on + strand, within DZA65_RS00300 at 74.556 kb on - strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.605 kb on + strand at 74.669 kb on + strand at 74.703 kb on + strand at 74.715 kb on + strand at 74.716 kb on - strand at 74.796 kb on + strand at 74.796 kb on + strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.922 kb on + strand at 74.922 kb on + strand at 74.922 kb on + strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.033 kb on - strand at 75.033 kb on - strand at 75.180 kb on + strand, within DZA65_RS00310 at 75.180 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.262 kb on - strand, within DZA65_RS00310 at 75.262 kb on - strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.495 kb on + strand, within DZA65_RS00310 at 75.495 kb on + strand, within DZA65_RS00310 at 75.496 kb on - strand, within DZA65_RS00310 at 75.496 kb on - strand, within DZA65_RS00310 at 75.502 kb on - strand, within DZA65_RS00310 at 75.554 kb on - strand, within DZA65_RS00310
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 72,165 + DZA65_RS00295 0.41 +1.4 72,165 + DZA65_RS00295 0.41 +0.1 72,165 + DZA65_RS00295 0.41 +1.2 72,165 + DZA65_RS00295 0.41 -0.9 72,165 + DZA65_RS00295 0.41 -0.4 72,165 + DZA65_RS00295 0.41 -0.7 72,165 + DZA65_RS00295 0.41 -1.1 72,165 + DZA65_RS00295 0.41 -0.7 72,166 - DZA65_RS00295 0.41 +0.6 72,166 - DZA65_RS00295 0.41 -0.5 72,166 - -1.0 72,166 - DZA65_RS00295 0.41 +0.4 72,166 - DZA65_RS00295 0.41 +0.4 72,166 - DZA65_RS00295 0.41 -2.6 72,166 - DZA65_RS00295 0.41 -2.1 72,166 - DZA65_RS00295 0.41 +0.2 72,166 - DZA65_RS00295 0.41 -1.9 72,166 - DZA65_RS00295 0.41 -0.6 72,166 - DZA65_RS00295 0.41 +0.7 72,166 - DZA65_RS00295 0.41 -0.2 72,222 - DZA65_RS00295 0.45 +0.0 72,297 - DZA65_RS00295 0.50 +0.1 72,352 + DZA65_RS00295 0.53 +0.4 72,352 + DZA65_RS00295 0.53 -1.0 72,353 - DZA65_RS00295 0.54 -1.9 72,353 - DZA65_RS00295 0.54 +2.0 72,353 - DZA65_RS00295 0.54 -1.1 72,448 + DZA65_RS00295 0.60 -1.8 72,448 + DZA65_RS00295 0.60 +0.4 72,448 + DZA65_RS00295 0.60 +0.0 72,449 - DZA65_RS00295 0.60 +1.0 72,449 - DZA65_RS00295 0.60 +0.8 72,449 - DZA65_RS00295 0.60 +0.2 72,449 - DZA65_RS00295 0.60 -1.6 72,449 - DZA65_RS00295 0.60 -1.6 72,449 - DZA65_RS00295 0.60 -0.8 72,486 - DZA65_RS00295 0.62 +1.3 72,486 - DZA65_RS00295 0.62 -2.3 72,486 - DZA65_RS00295 0.62 +0.3 72,576 + DZA65_RS00295 0.68 -0.2 72,608 + DZA65_RS00295 0.70 -0.3 72,608 + DZA65_RS00295 0.70 +0.2 72,608 + DZA65_RS00295 0.70 -1.4 72,608 + DZA65_RS00295 0.70 +0.5 72,608 + DZA65_RS00295 0.70 -0.7 72,608 + DZA65_RS00295 0.70 -0.1 72,608 + DZA65_RS00295 0.70 +0.6 72,608 + DZA65_RS00295 0.70 -0.3 72,608 + DZA65_RS00295 0.70 -2.6 72,609 - DZA65_RS00295 0.70 -2.1 72,609 - DZA65_RS00295 0.70 -0.6 72,609 - DZA65_RS00295 0.70 +0.4 72,609 - DZA65_RS00295 0.70 +0.0 72,609 - DZA65_RS00295 0.70 +0.5 72,609 - DZA65_RS00295 0.70 +0.4 72,609 - DZA65_RS00295 0.70 +0.4 72,609 - DZA65_RS00295 0.70 +4.1 72,609 - DZA65_RS00295 0.70 -1.3 72,609 - DZA65_RS00295 0.70 -0.4 72,692 + DZA65_RS00295 0.76 -0.1 72,692 + DZA65_RS00295 0.76 -0.3 72,692 + DZA65_RS00295 0.76 +0.0 72,692 + DZA65_RS00295 0.76 +0.4 72,692 + DZA65_RS00295 0.76 -0.3 72,692 + DZA65_RS00295 0.76 -2.0 72,692 + DZA65_RS00295 0.76 -1.0 72,692 + DZA65_RS00295 0.76 +0.4 72,693 - DZA65_RS00295 0.76 +1.8 72,693 - DZA65_RS00295 0.76 -1.1 72,695 + DZA65_RS00295 0.76 +1.3 72,695 + DZA65_RS00295 0.76 +0.1 72,695 + DZA65_RS00295 0.76 -0.5 72,696 - DZA65_RS00295 0.76 +1.4 72,696 - DZA65_RS00295 0.76 +0.1 72,696 - DZA65_RS00295 0.76 -0.7 72,696 - DZA65_RS00295 0.76 +0.0 72,696 - DZA65_RS00295 0.76 -0.2 72,696 - DZA65_RS00295 0.76 -0.7 72,696 - DZA65_RS00295 0.76 -0.8 72,696 - -0.3 72,920 + -0.6 72,958 + +0.4 72,958 + -0.7 72,958 + +0.0 72,959 - -0.0 72,959 - -1.8 72,959 - -0.2 72,959 - +0.2 72,959 - -0.6 72,959 - -0.6 72,971 - +1.0 73,007 + -0.4 73,008 - -0.4 73,037 + -0.1 73,038 - -2.9 73,038 - +0.0 73,064 + +2.1 73,065 - -1.0 73,065 - -0.7 73,065 - -1.3 73,065 - -0.2 73,065 - +2.0 73,123 + -0.1 73,173 + -1.0 73,173 + -1.1 73,174 - -0.7 73,174 - -1.0 73,174 - -1.5 73,266 - -1.8 73,353 + DZA65_RS00300 0.14 +0.6 73,354 - DZA65_RS00300 0.14 +0.7 73,376 - -0.6 73,588 + DZA65_RS00300 0.30 -0.2 73,588 + DZA65_RS00300 0.30 +0.4 73,588 + DZA65_RS00300 0.30 -2.8 73,588 + -0.6 73,589 - DZA65_RS00300 0.30 +0.1 73,589 - DZA65_RS00300 0.30 +3.7 73,589 - DZA65_RS00300 0.30 -1.3 73,605 + DZA65_RS00300 0.31 -0.6 73,606 - +0.0 73,830 + DZA65_RS00300 0.47 +0.2 73,831 - DZA65_RS00300 0.47 +0.7 73,875 + DZA65_RS00300 0.50 +2.3 73,875 + DZA65_RS00300 0.50 +0.6 74,024 + DZA65_RS00300 0.60 -1.9 74,024 + DZA65_RS00300 0.60 +0.0 74,024 + DZA65_RS00300 0.60 +1.0 74,025 - DZA65_RS00300 0.60 +2.8 74,142 + DZA65_RS00300 0.68 +2.3 74,143 - DZA65_RS00300 0.68 -1.4 74,201 + DZA65_RS00300 0.72 +0.8 74,202 - DZA65_RS00300 0.72 -1.2 74,225 - DZA65_RS00300 0.74 +1.0 74,270 + DZA65_RS00300 0.77 +0.2 74,270 + DZA65_RS00300 0.77 +1.0 74,556 - +0.4 74,558 + +2.4 74,558 + -1.8 74,558 + +0.9 74,558 + -0.8 74,558 + +1.1 74,558 + -2.0 74,558 + -1.4 74,558 + +0.8 74,558 + +0.0 74,559 - -0.4 74,559 - -0.7 74,559 - -0.1 74,559 - -0.6 74,559 - -1.4 74,559 - -0.6 74,559 - -0.6 74,559 - -1.2 74,559 - +0.7 74,559 - -1.1 74,559 - +1.0 74,559 - +0.4 74,559 - -0.6 74,559 - +0.0 74,601 + -0.5 74,601 + -0.6 74,601 + +1.7 74,601 + +0.4 74,601 + +0.2 74,601 + -0.9 74,601 + -0.3 74,601 + +0.6 74,601 + -1.3 74,601 + -1.1 74,601 + -0.8 74,601 + -0.8 74,602 - +0.0 74,602 - -0.7 74,602 - +0.4 74,602 - -1.0 74,602 - -0.0 74,602 - +2.4 74,602 - +0.2 74,602 - -0.1 74,602 - +0.6 74,602 - -1.2 74,602 - +0.5 74,602 - -2.4 74,602 - -2.1 74,602 - -2.1 74,602 - -1.3 74,602 - -0.6 74,602 - +0.5 74,602 - -2.0 74,605 + -0.9 74,669 + -0.5 74,703 + -0.4 74,715 + -0.4 74,716 - +2.2 74,796 + -0.4 74,796 + +2.2 74,797 - +0.6 74,797 - -1.2 74,797 - +0.0 74,797 - -0.3 74,797 - -1.0 74,797 - +3.6 74,797 - -0.2 74,922 + -1.3 74,922 + -0.6 74,922 + -2.6 75,032 + +2.0 75,032 + -1.0 75,032 + -0.8 75,033 - -0.8 75,033 - +0.1 75,180 + DZA65_RS00310 0.21 -0.7 75,180 + DZA65_RS00310 0.21 -1.0 75,261 + DZA65_RS00310 0.27 +1.6 75,261 + DZA65_RS00310 0.27 +0.4 75,261 + DZA65_RS00310 0.27 -1.7 75,261 + DZA65_RS00310 0.27 +0.3 75,262 - DZA65_RS00310 0.27 -1.1 75,262 - DZA65_RS00310 0.27 -0.8 75,397 + DZA65_RS00310 0.37 +1.5 75,397 + DZA65_RS00310 0.37 -1.0 75,397 + DZA65_RS00310 0.37 +1.2 75,397 + DZA65_RS00310 0.37 +1.0 75,397 + DZA65_RS00310 0.37 -2.0 75,397 + DZA65_RS00310 0.37 +0.9 75,397 + DZA65_RS00310 0.37 +0.1 75,397 + DZA65_RS00310 0.37 -0.3 75,397 + DZA65_RS00310 0.37 -0.9 75,398 - DZA65_RS00310 0.37 -0.6 75,398 - DZA65_RS00310 0.37 +1.4 75,398 - DZA65_RS00310 0.37 -1.0 75,398 - DZA65_RS00310 0.37 -1.9 75,398 - DZA65_RS00310 0.37 +1.0 75,398 - DZA65_RS00310 0.37 -0.7 75,398 - DZA65_RS00310 0.37 +0.0 75,398 - DZA65_RS00310 0.37 +0.2 75,398 - DZA65_RS00310 0.37 -1.6 75,495 + DZA65_RS00310 0.44 +1.6 75,495 + DZA65_RS00310 0.44 -0.6 75,496 - DZA65_RS00310 0.44 -1.5 75,496 - DZA65_RS00310 0.44 -1.0 75,502 - DZA65_RS00310 0.45 -0.3 75,554 - DZA65_RS00310 0.49 -1.0
Or see this region's nucleotide sequence