Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22440

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,854,126	-		DZA65_RS22435	0.21	-1.2
4,854,160	+		DZA65_RS22435	0.24	+1.3
4,854,165	+		DZA65_RS22435	0.25	-1.1
4,854,185	-		DZA65_RS22435	0.27	+1.0
4,854,185	-		DZA65_RS22435	0.27	+1.0
4,854,189	+		DZA65_RS22435	0.27	-0.0
4,854,189	+		DZA65_RS22435	0.27	-0.4
4,854,242	-		DZA65_RS22435	0.32	+0.6
4,854,242	-		DZA65_RS22435	0.32	+2.0
4,854,297	-		DZA65_RS22435	0.37	+2.2
4,854,297	-		DZA65_RS22435	0.37	+0.6
4,854,297	-		DZA65_RS22435	0.37	-1.1
4,854,344	+		DZA65_RS22435	0.42	-0.4
4,854,344	+		DZA65_RS22435	0.42	-0.3
4,854,345	-		DZA65_RS22435	0.42	+0.0
4,854,406	-		DZA65_RS22435	0.47	-1.5
4,854,406	-		DZA65_RS22435	0.47	+0.5
4,854,406	-		DZA65_RS22435	0.47	+0.4
4,854,416	+		DZA65_RS22435	0.48	-2.5
4,854,416	+		DZA65_RS22435	0.48	-0.0
4,854,416	+		DZA65_RS22435	0.48	-0.4
4,854,417	-		DZA65_RS22435	0.49	-0.9
4,854,417	-		DZA65_RS22435	0.49	-0.5
4,854,417	-		DZA65_RS22435	0.49	+0.5
4,854,425	+		DZA65_RS22435	0.49	+0.8
4,854,426	-		DZA65_RS22435	0.49	+0.8
4,854,436	-		DZA65_RS22435	0.50	-0.2
4,854,436	-		DZA65_RS22435	0.50	+1.0
4,854,451	+		DZA65_RS22435	0.52	-0.8
4,854,451	+		DZA65_RS22435	0.52	-0.2
4,854,452	-		DZA65_RS22435	0.52	+1.0
4,854,452	-		DZA65_RS22435	0.52	-0.0
4,854,468	+		DZA65_RS22435	0.53	-1.2
4,854,469	-		DZA65_RS22435	0.53	+2.4
4,854,516	+		DZA65_RS22435	0.58	-0.2
4,854,516	+		DZA65_RS22435	0.58	-1.1
4,854,516	+		DZA65_RS22435	0.58	+0.0
4,854,516	+		DZA65_RS22435	0.58	-1.3
4,854,517	-		DZA65_RS22435	0.58	-2.2
4,854,519	+		DZA65_RS22435	0.58	+0.1
4,854,519	+		DZA65_RS22435	0.58	-0.7
4,854,519	+		DZA65_RS22435	0.58	+0.0
4,854,519	+		DZA65_RS22435	0.58	-0.3
4,854,519	+		DZA65_RS22435	0.58	+0.8
4,854,520	-		DZA65_RS22435	0.58	+0.4
4,854,520	-		DZA65_RS22435	0.58	+0.3
4,854,520	-		DZA65_RS22435	0.58	-0.8
4,854,520	-		DZA65_RS22435	0.58	-0.5
4,854,533	+		DZA65_RS22435	0.59	-0.1
4,854,534	-		DZA65_RS22435	0.59	-1.1
4,854,552	-		DZA65_RS22435	0.61	-1.2
4,854,612	+		DZA65_RS22435	0.67	+0.2
4,854,612	+		DZA65_RS22435	0.67	-1.2
4,854,612	+		DZA65_RS22435	0.67	-0.9
4,854,612	+		DZA65_RS22435	0.67	-0.8
4,854,612	+		DZA65_RS22435	0.67	+0.3
4,854,613	-		DZA65_RS22435	0.67	+1.1
4,854,613	-		DZA65_RS22435	0.67	+0.2
4,854,613	-		DZA65_RS22435	0.67	-0.6
4,854,649	-		DZA65_RS22435	0.70	-0.4
4,854,726	+		DZA65_RS22435	0.77	-0.1
4,854,726	+		DZA65_RS22435	0.77	-0.5
4,854,727	-		DZA65_RS22435	0.78	+0.6
4,854,750	+		DZA65_RS22435	0.80	+0.3
4,854,751	-		DZA65_RS22435	0.80	+0.0
4,854,761	+		DZA65_RS22435	0.81	+0.0
4,854,808	-		DZA65_RS22435	0.85	+1.7
4,854,821	-		DZA65_RS22435	0.86	+1.8
4,854,821	-		DZA65_RS22435	0.86	+0.3
4,854,821	-		DZA65_RS22435	0.86	-0.6
4,854,825	+		DZA65_RS22435	0.87	-0.4
4,854,825	+		DZA65_RS22435	0.87	-0.6
4,854,825	+		DZA65_RS22435	0.87	-0.1
4,854,826	-		DZA65_RS22435	0.87	+0.8
4,854,826	-		DZA65_RS22435	0.87	+0.7
4,854,826	-		DZA65_RS22435	0.87	-0.7
4,854,901	+				-0.4
4,854,901	+				-0.3
4,854,901	+				-1.5
4,854,901	+				+0.6
4,854,901	+				-0.3
4,854,902	-				+1.0
4,854,902	-				+0.5
4,854,902	-				+0.3
4,854,939	+				-0.2
4,854,939	+				-2.1
4,854,977	+				-0.9
4,854,991	+				+1.2
4,854,991	+				+1.8
4,855,006	-				+1.0
4,855,046	+				+0.5
4,855,046	+				-0.4
4,855,046	+				-1.7
4,855,046	+				-0.5
4,855,046	+				+0.8
4,855,046	+				+0.8
4,855,047	-				-1.2
4,855,047	-				+1.8
4,855,081	+				+0.1
4,855,235	-		DZA65_RS22440	0.28	-0.2
4,855,235	-		DZA65_RS22440	0.28	-0.0
4,855,296	-		DZA65_RS22440	0.36	-0.2
4,855,304	+		DZA65_RS22440	0.37	-0.1
4,855,304	+		DZA65_RS22440	0.37	+1.1
4,855,304	+		DZA65_RS22440	0.37	+0.6
4,855,305	-		DZA65_RS22440	0.37	-0.6
4,855,305	-		DZA65_RS22440	0.37	+0.0
4,855,305	-		DZA65_RS22440	0.37	+0.7
4,855,367	+		DZA65_RS22440	0.45	-0.1
4,855,367	+		DZA65_RS22440	0.45	+1.4
4,855,367	+		DZA65_RS22440	0.45	+0.4
4,855,367	+		DZA65_RS22440	0.45	+0.3
4,855,368	-		DZA65_RS22440	0.46	-0.2
4,855,368	-		DZA65_RS22440	0.46	-0.2
4,855,368	-		DZA65_RS22440	0.46	+0.7
4,855,368	-		DZA65_RS22440	0.46	+0.5
4,855,368	-		DZA65_RS22440	0.46	-0.3
4,855,539	+		DZA65_RS22440	0.69	+0.2
4,855,539	+		DZA65_RS22440	0.69	+2.2
4,855,539	+		DZA65_RS22440	0.69	+0.4
4,855,539	+		DZA65_RS22440	0.69	-1.0
4,855,540	-		DZA65_RS22440	0.69	-1.2
4,855,540	-		DZA65_RS22440	0.69	+0.7
4,855,540	-		DZA65_RS22440	0.69	-0.3
4,855,540	-		DZA65_RS22440	0.69	-2.0
4,855,540	-		DZA65_RS22440	0.69	+1.5
4,855,540	-		DZA65_RS22440	0.69	-0.1
4,855,540	-		DZA65_RS22440	0.69	-0.2
4,855,540	-		DZA65_RS22440	0.69	+0.4
4,855,579	-		DZA65_RS22440	0.74	+2.1
4,855,701	+				+0.6
4,855,701	+				+0.3
4,855,701	+				+1.1
4,855,701	+				+0.0
4,855,701	+				+0.0
4,855,701	+				+0.4
4,855,701	+				-1.5
4,855,702	-				-0.9
4,855,702	-				+0.8
4,855,702	-				-0.2
4,855,702	-				+0.3
4,855,702	-				-1.1
4,855,702	-				+1.3
4,855,702	-				+0.8
4,855,702	-				+0.3
4,855,702	-				-0.3
4,855,702	-				+0.6
4,855,702	-				-0.9
4,855,710	-				+0.4
4,855,710	-				-0.7
4,855,820	+				+0.8
4,855,820	+				+0.2
4,855,821	-				-0.2
4,855,821	-				-1.0
4,855,821	-				-0.2
4,855,821	-				+0.6
4,856,083	+		DZA65_RS22445	0.41	-0.2
4,856,083	+		DZA65_RS22445	0.41	+1.2
4,856,083	+		DZA65_RS22445	0.41	-0.6
4,856,083	+		DZA65_RS22445	0.41	-1.7
4,856,083	+		DZA65_RS22445	0.41	+1.2
4,856,083	+		DZA65_RS22445	0.41	+0.5
4,856,084	-		DZA65_RS22445	0.41	-1.5
4,856,084	-		DZA65_RS22445	0.41	+0.1
4,856,084	-		DZA65_RS22445	0.41	+0.0
4,856,084	-		DZA65_RS22445	0.41	-0.0
4,856,084	-		DZA65_RS22445	0.41	+0.1
4,856,138	+		DZA65_RS22445	0.48	+0.9
4,856,138	+		DZA65_RS22445	0.48	-0.1
4,856,138	+		DZA65_RS22445	0.48	-0.6
4,856,139	-		DZA65_RS22445	0.48	+1.1
4,856,139	-		DZA65_RS22445	0.48	-0.2
4,856,139	-		DZA65_RS22445	0.48	-1.0
4,856,182	+		DZA65_RS22445	0.53	-0.4
4,856,205	+		DZA65_RS22445	0.56	+0.4
4,856,205	+		DZA65_RS22445	0.56	+0.6
4,856,205	+		DZA65_RS22445	0.56	+0.2
4,856,205	+		DZA65_RS22445	0.56	+0.4
4,856,206	-		DZA65_RS22445	0.56	+0.3
4,856,206	-		DZA65_RS22445	0.56	-0.1
4,856,236	-		DZA65_RS22445	0.60	+0.4
4,856,331	-		DZA65_RS22445	0.72	+0.4
4,856,361	+		DZA65_RS22445	0.76	-1.2
4,856,362	-		DZA65_RS22445	0.76	+0.4
4,856,404	+		DZA65_RS22445	0.82	+1.6
4,856,405	-		DZA65_RS22445	0.82	-0.2
4,856,405	-		DZA65_RS22445	0.82	+0.8
4,856,433	+		DZA65_RS22445	0.85	-2.2
4,856,434	-		DZA65_RS22445	0.85	+0.8
4,856,434	-		DZA65_RS22445	0.85	+0.0
4,856,454	+		DZA65_RS22445	0.88	-0.2
4,856,454	+		DZA65_RS22445	0.88	-0.9
4,856,454	+		DZA65_RS22445	0.88	+1.3
4,856,454	+		DZA65_RS22445	0.88	-1.5
4,856,454	+		DZA65_RS22445	0.88	-1.0
4,856,454	+		DZA65_RS22445	0.88	+0.3
4,856,455	-		DZA65_RS22445	0.88	-0.6
4,856,455	-		DZA65_RS22445	0.88	+0.0
4,856,455	-		DZA65_RS22445	0.88	+0.2
4,856,455	-		DZA65_RS22445	0.88	-0.7
4,856,455	-		DZA65_RS22445	0.88	-0.2
4,856,455	-		DZA65_RS22445	0.88	+1.2
4,856,472	+				-1.7
4,856,472	+				-0.5
4,856,472	+				+0.2
4,856,472	+				-0.5
4,856,472	+				-1.2
4,856,472	+				-1.0
4,856,472	+				+0.6
4,856,472	+				-1.0
4,856,473	-				+0.4
4,856,473	-				-0.4
4,856,473	-				+0.1
4,856,473	-				-2.2
4,856,473	-				+0.8
4,856,473	-				+1.1
4,856,473	-				-0.5
4,856,473	-				+0.3
4,856,473	-				-0.8
4,856,473	-				-3.0
4,856,475	-				+0.3
4,856,548	+				+0.8
4,856,549	-				+1.8
4,856,557	+				-0.0
4,856,557	+				-0.0
4,856,574	-				+0.7
4,856,574	-				-0.6
4,856,580	+				-0.6
4,856,581	-				-1.4
4,856,744	-		DZA65_RS22450	0.61	-0.0
4,856,744	-		DZA65_RS22450	0.61	-0.0
4,856,744	-		DZA65_RS22450	0.61	+1.2