Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22015

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,759,707	+		DZA65_RS22010	0.28	-1.5
4,759,707	+		DZA65_RS22010	0.28	-0.9
4,759,708	-		DZA65_RS22010	0.28	+0.5
4,759,734	+		DZA65_RS22010	0.31	-0.6
4,759,818	-		DZA65_RS22010	0.38	+0.7
4,759,818	-		DZA65_RS22010	0.38	-0.2
4,759,959	+		DZA65_RS22010	0.50	+0.0
4,759,959	+		DZA65_RS22010	0.50	+0.5
4,759,959	+		DZA65_RS22010	0.50	+1.1
4,759,959	+		DZA65_RS22010	0.50	-0.2
4,759,959	+		DZA65_RS22010	0.50	+0.8
4,759,960	-				+0.8
4,759,960	-		DZA65_RS22010	0.50	+0.7
4,760,049	+		DZA65_RS22010	0.57	-0.3
4,760,050	-		DZA65_RS22010	0.57	-0.2
4,760,050	-		DZA65_RS22010	0.57	+1.7
4,760,050	-		DZA65_RS22010	0.57	-0.7
4,760,058	+		DZA65_RS22010	0.58	+0.3
4,760,059	-		DZA65_RS22010	0.58	-2.0
4,760,105	-		DZA65_RS22010	0.62	-0.3
4,760,105	-		DZA65_RS22010	0.62	-0.3
4,760,211	+		DZA65_RS22010	0.71	-0.7
4,760,211	+		DZA65_RS22010	0.71	+0.5
4,760,212	-		DZA65_RS22010	0.71	+0.1
4,760,286	-		DZA65_RS22010	0.77	-0.7
4,760,286	-		DZA65_RS22010	0.77	-0.3
4,760,455	+				-0.9
4,760,455	+				-0.2
4,760,456	-				-0.5
4,760,456	-				+0.7
4,760,456	-				-1.3
4,760,456	-				+1.0
4,760,456	-				+0.2
4,760,500	+				+1.0
4,760,501	-				-0.7
4,760,593	+				+0.6
4,760,593	+				-1.3
4,760,593	+				-0.7
4,760,593	+				-0.6
4,760,593	+				-1.3
4,760,593	+				+0.4
4,760,593	+				-0.5
4,760,593	+				-0.0
4,760,593	+				+0.1
4,760,593	+				-1.2
4,760,593	+				-0.7
4,760,593	+				-0.2
4,760,593	+				+0.3
4,760,594	-				+0.8
4,760,594	-				-0.5
4,760,594	-				+0.2
4,760,594	-				+2.3
4,760,594	-				+0.2
4,760,594	-				-1.5
4,760,594	-				-2.6
4,760,594	-				-0.7
4,760,594	-				-0.7
4,760,594	-				-1.0
4,760,594	-				+0.3
4,760,594	-				+0.4
4,760,594	-				+0.3
4,760,594	-				-1.7
4,760,594	-				+0.1
4,760,594	-				-0.2
4,760,594	-				+0.0
4,760,594	-				-0.6
4,760,594	-				-0.2
4,760,594	-				+0.8
4,760,594	-				+0.4
4,760,613	+				+0.8
4,760,614	-				-2.0
4,760,632	+				-0.3
4,760,632	+				+1.3
4,760,633	-				+0.4
4,760,633	-				-1.3
4,760,633	-				-1.7
4,760,642	+				+1.0
4,760,662	+				+0.5
4,760,662	+				-0.7
4,760,662	+				-0.7
4,760,663	-				+1.1
4,760,696	+				-1.6
4,760,697	-				+0.2
4,760,697	-				+0.0
4,760,733	+				-0.7
4,760,786	+				+1.3
4,760,786	+				+0.4
4,760,787	-				-0.6
4,760,787	-				+0.4
4,760,787	-				-0.4
4,760,787	-				-1.5
4,760,911	+		DZA65_RS22015	0.18	-0.7
4,760,911	+		DZA65_RS22015	0.18	+0.3
4,760,912	-		DZA65_RS22015	0.18	+1.1
4,760,912	-		DZA65_RS22015	0.18	-0.3
4,760,912	-		DZA65_RS22015	0.18	-1.0
4,760,912	-		DZA65_RS22015	0.18	+0.3
4,760,912	-		DZA65_RS22015	0.18	+0.6
4,760,967	+		DZA65_RS22015	0.22	+0.5
4,760,967	+		DZA65_RS22015	0.22	-0.2
4,760,968	-		DZA65_RS22015	0.22	-0.4
4,760,968	-		DZA65_RS22015	0.22	-0.6
4,761,026	+		DZA65_RS22015	0.26	+1.1
4,761,026	+		DZA65_RS22015	0.26	+1.5
4,761,027	-		DZA65_RS22015	0.26	+0.1
4,761,027	-		DZA65_RS22015	0.26	-1.0
4,761,027	-		DZA65_RS22015	0.26	-2.3
4,761,059	+		DZA65_RS22015	0.28	+0.3
4,761,059	+		DZA65_RS22015	0.28	+0.3
4,761,060	-		DZA65_RS22015	0.28	-2.0
4,761,297	-		DZA65_RS22015	0.45	-0.6
4,761,297	-		DZA65_RS22015	0.45	-0.6
4,761,298	+				-1.2
4,761,299	-		DZA65_RS22015	0.45	-0.4
4,761,299	-		DZA65_RS22015	0.45	-0.1
4,761,324	-		DZA65_RS22015	0.46	-0.1
4,761,324	-		DZA65_RS22015	0.46	+1.6
4,761,379	+		DZA65_RS22015	0.50	+0.3
4,761,401	-		DZA65_RS22015	0.52	+1.0
4,761,431	+		DZA65_RS22015	0.54	+0.0
4,761,496	+		DZA65_RS22015	0.58	+0.3
4,761,521	-		DZA65_RS22015	0.60	+0.9
4,761,524	+		DZA65_RS22015	0.60	-0.1
4,761,524	+		DZA65_RS22015	0.60	-0.7
4,761,524	+		DZA65_RS22015	0.60	+0.6
4,761,524	+		DZA65_RS22015	0.60	+0.4
4,761,524	+		DZA65_RS22015	0.60	+0.8
4,761,525	-		DZA65_RS22015	0.60	+0.4
4,761,525	-		DZA65_RS22015	0.60	-0.5
4,761,525	-		DZA65_RS22015	0.60	+0.8
4,761,525	-		DZA65_RS22015	0.60	-0.7
4,761,525	-		DZA65_RS22015	0.60	-0.7
4,761,525	-		DZA65_RS22015	0.60	+0.6
4,761,525	-		DZA65_RS22015	0.60	+1.0
4,761,525	-		DZA65_RS22015	0.60	+0.4
4,761,525	-		DZA65_RS22015	0.60	+0.3
4,761,525	-		DZA65_RS22015	0.60	-0.2
4,761,525	-		DZA65_RS22015	0.60	-0.3
4,761,525	-		DZA65_RS22015	0.60	-1.2
4,761,525	-		DZA65_RS22015	0.60	+1.4
4,761,525	-		DZA65_RS22015	0.60	+0.6
4,761,525	-		DZA65_RS22015	0.60	-0.2
4,761,555	-		DZA65_RS22015	0.62	+0.1
4,761,692	+		DZA65_RS22015	0.72	+0.1
4,761,722	+		DZA65_RS22015	0.74	-0.3
4,761,723	-		DZA65_RS22015	0.74	+0.4
4,761,723	-		DZA65_RS22015	0.74	-0.6
4,761,723	-		DZA65_RS22015	0.74	+0.3
4,761,723	-		DZA65_RS22015	0.74	-1.2
4,761,726	-		DZA65_RS22015	0.74	-0.1
4,761,819	+		DZA65_RS22015	0.81	+0.5
4,761,820	-		DZA65_RS22015	0.81	-0.4
4,761,820	-		DZA65_RS22015	0.81	+0.4
4,761,886	+		DZA65_RS22015	0.85	+0.8
4,761,903	-		DZA65_RS22015	0.87	-1.2
4,761,909	-		DZA65_RS22015	0.87	-1.3
4,761,938	+		DZA65_RS22015	0.89	+0.5
4,761,938	+		DZA65_RS22015	0.89	-0.2
4,761,973	+				-0.9
4,761,973	+				+0.1
4,762,051	+				+0.2
4,762,052	-				-0.6
4,762,052	-				-0.4
4,762,054	+				+0.7
4,762,054	+				-1.2
4,762,055	-				+0.3
4,762,055	-				-1.0
4,762,072	+				+0.6
4,762,088	+				-1.6
4,762,088	+				+0.2
4,762,089	-				-0.2
4,762,092	+				+0.2
4,762,092	+				-1.2
4,762,092	+				+0.5
4,762,092	+				+0.5
4,762,092	+				-0.2
4,762,093	-				-0.2
4,762,093	-				-0.0
4,762,093	-				+0.4
4,762,093	-				-1.9
4,762,116	+				-2.1
4,762,116	+				-0.2
4,762,150	+		DZA65_RS22020	0.11	-0.6
4,762,213	+		DZA65_RS22020	0.21	+0.6
4,762,213	+		DZA65_RS22020	0.21	-0.0
4,762,213	+		DZA65_RS22020	0.21	-1.0
4,762,213	+		DZA65_RS22020	0.21	+0.1
4,762,214	-		DZA65_RS22020	0.21	-0.9
4,762,214	-		DZA65_RS22020	0.21	-0.7
4,762,225	+				+1.3
4,762,252	-		DZA65_RS22020	0.27	-0.7
4,762,390	-		DZA65_RS22020	0.49	+0.4
4,762,428	+		DZA65_RS22020	0.55	-2.2
4,762,428	+		DZA65_RS22020	0.55	+0.7
4,762,428	+		DZA65_RS22020	0.55	-0.2
4,762,428	+		DZA65_RS22020	0.55	-0.5
4,762,428	+		DZA65_RS22020	0.55	-0.7
4,762,428	+		DZA65_RS22020	0.55	+0.7
4,762,429	-		DZA65_RS22020	0.55	-0.2
4,762,429	-		DZA65_RS22020	0.55	+1.3
4,762,429	-		DZA65_RS22020	0.55	+0.1
4,762,476	+		DZA65_RS22020	0.63	+0.3
4,762,476	+		DZA65_RS22020	0.63	-0.9
4,762,477	-		DZA65_RS22020	0.63	+1.4
4,762,477	-		DZA65_RS22020	0.63	+0.6
4,762,489	-		DZA65_RS22020	0.65	+0.6
4,762,533	-		DZA65_RS22020	0.72	-0.2
4,762,533	-		DZA65_RS22020	0.72	-1.0
4,762,559	+		DZA65_RS22020	0.76	-0.1
4,762,560	-		DZA65_RS22020	0.76	-0.2
4,762,610	+		DZA65_RS22020	0.84	-3.2
4,762,611	-		DZA65_RS22020	0.84	-0.6
4,762,611	-		DZA65_RS22020	0.84	-0.8
4,762,611	-		DZA65_RS22020	0.84	+0.8
4,762,620	+		DZA65_RS22020	0.86	+0.7
4,762,623	+		DZA65_RS22020	0.86	-1.0
4,762,663	+				+0.5
4,762,663	+				+0.3
4,762,664	-				+0.3
4,762,680	+				-0.3
4,762,680	+				+1.1
4,762,680	+				-1.7
4,762,681	-				+0.4
4,762,681	-				+0.1
4,762,684	-				+0.8
4,762,707	-				+0.3
4,762,708	+				-1.5
4,762,708	+				-0.2
4,762,708	+				-0.3
4,762,708	+				+0.3
4,762,708	+				-0.2
4,762,708	+				+1.2
4,762,708	+				+0.4
4,762,709	-				+0.5
4,762,709	-				-0.6
4,762,709	-				-0.7
4,762,709	-				+0.8
4,762,721	+				+0.6
4,762,721	+				-1.1
4,762,721	+				+2.4
4,762,721	+				-2.0
4,762,721	+				-0.6
4,762,722	-				-0.4
4,762,722	-				-0.7
4,762,722	-				-0.7
4,762,722	-				-0.6
4,762,722	-				-0.2
4,762,722	-				-0.4
4,762,722	-				+0.2
4,762,725	+				-0.9
4,762,725	+				-0.1
4,762,726	-				+1.7
4,762,726	-				+0.8
4,762,788	+				-0.9
4,762,789	-				+0.8
4,762,789	-				-1.3
4,762,789	-				+0.5
4,762,789	-				+0.1
4,762,789	-				+0.1
4,762,789	-				+0.8
4,762,789	-				-1.0
4,762,789	-				-0.2
4,762,811	-				-0.2
4,762,816	+				+0.0
4,762,816	+				+0.1
4,762,816	+				-1.4
4,762,817	-				-2.1
4,762,817	-				-1.7
4,762,820	-				+0.3
4,762,826	-				+0.3
4,762,828	+				-0.2
4,762,829	-				-0.2
4,762,829	-				+0.0
4,762,829	-				+0.0
4,762,829	-				-0.5
4,762,829	-				-0.2
4,762,837	+				-0.6
4,762,837	+				-0.4
4,762,838	-				+0.5
4,762,838	-				-0.8
4,762,838	-				-0.7
4,762,838	-				+1.4
4,762,955	+		DZA65_RS22025	0.47	-0.1
4,763,024	+		DZA65_RS22025	0.73	+2.1
4,763,025	-		DZA65_RS22025	0.73	+1.0