Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18985

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS18980 and DZA65_RS18985 are separated by 15 nucleotidesDZA65_RS18985 and DZA65_RS18990 are separated by 188 nucleotides DZA65_RS18980: DZA65_RS18980 - immune-responsive protein 1, at 4,100,713 to 4,102,089 _RS18980 DZA65_RS18985: DZA65_RS18985 - hydrolase, at 4,102,105 to 4,103,295 _RS18985 DZA65_RS18990: DZA65_RS18990 - dihydrolipoyl dehydrogenase, at 4,103,484 to 4,104,908 _RS18990 Position (kb) 4102 4103 4104Strain fitness (log2 ratio) -2 -1 0 1 2at 4101.369 kb on - strand, within DZA65_RS18980at 4101.528 kb on - strand, within DZA65_RS18980at 4101.541 kb on + strand, within DZA65_RS18980at 4101.541 kb on + strand, within DZA65_RS18980at 4101.541 kb on + strand, within DZA65_RS18980at 4101.541 kb on + strand, within DZA65_RS18980at 4101.542 kb on - strand, within DZA65_RS18980at 4101.542 kb on - strand, within DZA65_RS18980at 4101.542 kb on - strand, within DZA65_RS18980at 4101.542 kb on - strand, within DZA65_RS18980at 4101.556 kb on + strand, within DZA65_RS18980at 4101.556 kb on + strand, within DZA65_RS18980at 4101.556 kb on + strand, within DZA65_RS18980at 4101.557 kb on - strand, within DZA65_RS18980at 4101.557 kb on - strand, within DZA65_RS18980at 4101.557 kb on - strand, within DZA65_RS18980at 4101.557 kb on - strand, within DZA65_RS18980at 4101.557 kb on - strand, within DZA65_RS18980at 4101.571 kb on + strand, within DZA65_RS18980at 4101.571 kb on + strand, within DZA65_RS18980at 4101.571 kb on + strand, within DZA65_RS18980at 4101.571 kb on + strand, within DZA65_RS18980at 4101.571 kb on + strand, within DZA65_RS18980at 4101.571 kb on + strand, within DZA65_RS18980at 4101.571 kb on + strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.572 kb on - strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.727 kb on + strand, within DZA65_RS18980at 4101.728 kb on - strand, within DZA65_RS18980at 4101.728 kb on - strand, within DZA65_RS18980at 4101.728 kb on - strand, within DZA65_RS18980at 4101.728 kb on - strand, within DZA65_RS18980at 4101.728 kb on - strand, within DZA65_RS18980at 4101.728 kb on - strand, within DZA65_RS18980at 4101.820 kb on - strand, within DZA65_RS18980at 4101.820 kb on - strand, within DZA65_RS18980at 4101.820 kb on - strand, within DZA65_RS18980at 4101.820 kb on - strand, within DZA65_RS18980at 4101.820 kb on - strand, within DZA65_RS18980at 4101.824 kb on + strand, within DZA65_RS18980at 4102.075 kb on - strandat 4102.087 kb on + strandat 4102.087 kb on + strandat 4102.088 kb on - strandat 4102.116 kb on + strandat 4102.187 kb on + strandat 4102.187 kb on + strandat 4102.187 kb on + strandat 4102.188 kb on - strandat 4102.188 kb on - strandat 4102.215 kb on + strandat 4102.215 kb on + strandat 4102.216 kb on - strandat 4102.274 kb on + strand, within DZA65_RS18985at 4102.274 kb on + strand, within DZA65_RS18985at 4102.274 kb on + strand, within DZA65_RS18985at 4102.275 kb on - strand, within DZA65_RS18985at 4102.275 kb on - strand, within DZA65_RS18985at 4102.275 kb on - strand, within DZA65_RS18985at 4102.308 kb on + strand, within DZA65_RS18985at 4102.309 kb on - strand, within DZA65_RS18985at 4102.354 kb on - strand, within DZA65_RS18985at 4102.354 kb on - strand, within DZA65_RS18985at 4102.354 kb on - strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.406 kb on + strand, within DZA65_RS18985at 4102.407 kb on - strand, within DZA65_RS18985at 4102.407 kb on - strand, within DZA65_RS18985at 4102.407 kb on - strand, within DZA65_RS18985at 4102.407 kb on - strand, within DZA65_RS18985at 4102.407 kb on - strand, within DZA65_RS18985at 4102.407 kb on - strandat 4102.407 kb on - strand, within DZA65_RS18985at 4102.407 kb on - strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.429 kb on + strand, within DZA65_RS18985at 4102.430 kb on - strand, within DZA65_RS18985at 4102.430 kb on - strand, within DZA65_RS18985at 4102.430 kb on - strand, within DZA65_RS18985at 4102.430 kb on - strand, within DZA65_RS18985at 4102.430 kb on - strand, within DZA65_RS18985at 4102.430 kb on - strand, within DZA65_RS18985at 4102.460 kb on + strand, within DZA65_RS18985at 4102.460 kb on + strand, within DZA65_RS18985at 4102.460 kb on + strand, within DZA65_RS18985at 4102.460 kb on + strand, within DZA65_RS18985at 4102.460 kb on + strand, within DZA65_RS18985at 4102.460 kb on + strand, within DZA65_RS18985at 4102.461 kb on - strand, within DZA65_RS18985at 4102.461 kb on - strand, within DZA65_RS18985at 4102.461 kb on - strand, within DZA65_RS18985at 4102.461 kb on - strand, within DZA65_RS18985at 4102.461 kb on - strand, within DZA65_RS18985at 4102.461 kb on - strand, within DZA65_RS18985at 4102.461 kb on - strand, within DZA65_RS18985at 4102.500 kb on + strand, within DZA65_RS18985at 4102.501 kb on - strand, within DZA65_RS18985at 4102.533 kb on - strand, within DZA65_RS18985at 4102.691 kb on + strand, within DZA65_RS18985at 4102.691 kb on + strand, within DZA65_RS18985at 4102.691 kb on + strand, within DZA65_RS18985at 4102.692 kb on - strand, within DZA65_RS18985at 4102.745 kb on + strand, within DZA65_RS18985at 4102.745 kb on + strand, within DZA65_RS18985at 4102.745 kb on + strand, within DZA65_RS18985at 4102.746 kb on - strand, within DZA65_RS18985at 4102.746 kb on - strand, within DZA65_RS18985at 4102.790 kb on + strand, within DZA65_RS18985at 4102.790 kb on + strand, within DZA65_RS18985at 4102.819 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.994 kb on + strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4102.995 kb on - strand, within DZA65_RS18985at 4103.142 kb on - strand, within DZA65_RS18985at 4103.210 kb on + strandat 4103.210 kb on + strandat 4103.210 kb on + strandat 4103.211 kb on - strandat 4103.271 kb on + strandat 4103.271 kb on + strandat 4103.271 kb on + strandat 4103.278 kb on + strandat 4103.279 kb on - strandat 4103.279 kb on - strandat 4103.296 kb on + strandat 4103.297 kb on - strandat 4103.297 kb on - strandat 4103.299 kb on + strandat 4103.300 kb on - strandat 4103.345 kb on + strandat 4103.346 kb on - strandat 4103.346 kb on - strandat 4103.358 kb on + strandat 4103.358 kb on + strandat 4103.426 kb on + strandat 4103.426 kb on + strandat 4103.485 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
4,101,369 - DZA65_RS18980 0.48 -0.1
4,101,528 - DZA65_RS18980 0.59 +0.2
4,101,541 + DZA65_RS18980 0.60 -0.3
4,101,541 + DZA65_RS18980 0.60 -1.3
4,101,541 + DZA65_RS18980 0.60 -0.4
4,101,541 + DZA65_RS18980 0.60 +1.1
4,101,542 - DZA65_RS18980 0.60 -1.2
4,101,542 - DZA65_RS18980 0.60 -0.3
4,101,542 - DZA65_RS18980 0.60 +2.2
4,101,542 - DZA65_RS18980 0.60 +0.0
4,101,556 + DZA65_RS18980 0.61 -0.5
4,101,556 + DZA65_RS18980 0.61 +0.1
4,101,556 + DZA65_RS18980 0.61 -1.6
4,101,557 - DZA65_RS18980 0.61 -0.8
4,101,557 - DZA65_RS18980 0.61 -0.1
4,101,557 - DZA65_RS18980 0.61 -0.2
4,101,557 - DZA65_RS18980 0.61 +0.6
4,101,557 - DZA65_RS18980 0.61 -1.2
4,101,571 + DZA65_RS18980 0.62 +0.0
4,101,571 + DZA65_RS18980 0.62 +2.2
4,101,571 + DZA65_RS18980 0.62 +0.4
4,101,571 + DZA65_RS18980 0.62 +0.4
4,101,571 + DZA65_RS18980 0.62 -0.9
4,101,571 + DZA65_RS18980 0.62 -0.1
4,101,571 + DZA65_RS18980 0.62 +1.9
4,101,572 - DZA65_RS18980 0.62 -0.6
4,101,572 - DZA65_RS18980 0.62 +0.3
4,101,572 - DZA65_RS18980 0.62 -0.9
4,101,572 - DZA65_RS18980 0.62 +1.2
4,101,572 - DZA65_RS18980 0.62 +1.0
4,101,572 - DZA65_RS18980 0.62 +1.1
4,101,572 - DZA65_RS18980 0.62 +0.6
4,101,572 - DZA65_RS18980 0.62 -0.5
4,101,572 - DZA65_RS18980 0.62 +0.6
4,101,727 + DZA65_RS18980 0.74 +0.1
4,101,727 + DZA65_RS18980 0.74 -2.2
4,101,727 + DZA65_RS18980 0.74 +0.6
4,101,727 + DZA65_RS18980 0.74 -0.0
4,101,727 + DZA65_RS18980 0.74 +0.2
4,101,727 + DZA65_RS18980 0.74 +0.1
4,101,727 + DZA65_RS18980 0.74 +0.4
4,101,727 + DZA65_RS18980 0.74 -0.4
4,101,727 + DZA65_RS18980 0.74 -0.6
4,101,728 - DZA65_RS18980 0.74 +0.6
4,101,728 - DZA65_RS18980 0.74 +0.2
4,101,728 - DZA65_RS18980 0.74 -0.3
4,101,728 - DZA65_RS18980 0.74 -0.7
4,101,728 - DZA65_RS18980 0.74 +1.3
4,101,728 - DZA65_RS18980 0.74 -0.2
4,101,820 - DZA65_RS18980 0.80 -0.2
4,101,820 - DZA65_RS18980 0.80 +0.6
4,101,820 - DZA65_RS18980 0.80 -0.0
4,101,820 - DZA65_RS18980 0.80 +1.5
4,101,820 - DZA65_RS18980 0.80 -1.3
4,101,824 + DZA65_RS18980 0.81 -0.1
4,102,075 - -0.1
4,102,087 + -0.7
4,102,087 + +0.6
4,102,088 - +0.6
4,102,116 + -0.2
4,102,187 + -0.8
4,102,187 + -0.7
4,102,187 + -0.3
4,102,188 - +0.2
4,102,188 - +1.6
4,102,215 + +0.0
4,102,215 + -1.4
4,102,216 - -0.1
4,102,274 + DZA65_RS18985 0.14 -1.7
4,102,274 + DZA65_RS18985 0.14 -0.2
4,102,274 + DZA65_RS18985 0.14 -1.7
4,102,275 - DZA65_RS18985 0.14 +0.2
4,102,275 - DZA65_RS18985 0.14 -0.9
4,102,275 - DZA65_RS18985 0.14 -0.8
4,102,308 + DZA65_RS18985 0.17 +1.2
4,102,309 - DZA65_RS18985 0.17 +0.7
4,102,354 - DZA65_RS18985 0.21 +1.2
4,102,354 - DZA65_RS18985 0.21 +1.4
4,102,354 - DZA65_RS18985 0.21 -1.7
4,102,406 + DZA65_RS18985 0.25 -1.4
4,102,406 + DZA65_RS18985 0.25 -0.4
4,102,406 + DZA65_RS18985 0.25 -0.1
4,102,406 + DZA65_RS18985 0.25 -1.0
4,102,406 + DZA65_RS18985 0.25 -0.1
4,102,406 + DZA65_RS18985 0.25 -2.0
4,102,406 + DZA65_RS18985 0.25 +0.1
4,102,406 + DZA65_RS18985 0.25 -0.4
4,102,406 + DZA65_RS18985 0.25 +0.1
4,102,406 + DZA65_RS18985 0.25 +0.6
4,102,406 + DZA65_RS18985 0.25 +0.1
4,102,406 + DZA65_RS18985 0.25 +0.6
4,102,407 - DZA65_RS18985 0.25 +0.3
4,102,407 - DZA65_RS18985 0.25 -1.4
4,102,407 - DZA65_RS18985 0.25 -0.7
4,102,407 - DZA65_RS18985 0.25 +0.0
4,102,407 - DZA65_RS18985 0.25 +0.2
4,102,407 - -1.0
4,102,407 - DZA65_RS18985 0.25 -0.5
4,102,407 - DZA65_RS18985 0.25 -0.2
4,102,429 + DZA65_RS18985 0.27 -0.3
4,102,429 + DZA65_RS18985 0.27 -2.2
4,102,429 + DZA65_RS18985 0.27 -2.0
4,102,429 + DZA65_RS18985 0.27 -0.6
4,102,429 + DZA65_RS18985 0.27 -0.7
4,102,429 + DZA65_RS18985 0.27 -1.0
4,102,429 + DZA65_RS18985 0.27 +1.2
4,102,429 + DZA65_RS18985 0.27 +1.2
4,102,430 - DZA65_RS18985 0.27 -1.0
4,102,430 - DZA65_RS18985 0.27 -0.3
4,102,430 - DZA65_RS18985 0.27 -0.2
4,102,430 - DZA65_RS18985 0.27 -0.4
4,102,430 - DZA65_RS18985 0.27 -0.7
4,102,430 - DZA65_RS18985 0.27 -0.5
4,102,460 + DZA65_RS18985 0.30 -1.0
4,102,460 + DZA65_RS18985 0.30 +1.2
4,102,460 + DZA65_RS18985 0.30 -1.4
4,102,460 + DZA65_RS18985 0.30 +0.6
4,102,460 + DZA65_RS18985 0.30 +1.0
4,102,460 + DZA65_RS18985 0.30 -1.8
4,102,461 - DZA65_RS18985 0.30 +1.5
4,102,461 - DZA65_RS18985 0.30 +0.0
4,102,461 - DZA65_RS18985 0.30 -0.1
4,102,461 - DZA65_RS18985 0.30 +0.2
4,102,461 - DZA65_RS18985 0.30 -0.1
4,102,461 - DZA65_RS18985 0.30 -2.0
4,102,461 - DZA65_RS18985 0.30 -0.1
4,102,500 + DZA65_RS18985 0.33 -0.8
4,102,501 - DZA65_RS18985 0.33 +0.1
4,102,533 - DZA65_RS18985 0.36 -0.7
4,102,691 + DZA65_RS18985 0.49 -0.2
4,102,691 + DZA65_RS18985 0.49 -1.5
4,102,691 + DZA65_RS18985 0.49 -1.6
4,102,692 - DZA65_RS18985 0.49 -0.4
4,102,745 + DZA65_RS18985 0.54 -0.1
4,102,745 + DZA65_RS18985 0.54 +0.3
4,102,745 + DZA65_RS18985 0.54 -0.9
4,102,746 - DZA65_RS18985 0.54 +0.9
4,102,746 - DZA65_RS18985 0.54 -0.1
4,102,790 + DZA65_RS18985 0.58 -1.7
4,102,790 + DZA65_RS18985 0.58 +0.2
4,102,819 + DZA65_RS18985 0.60 +0.8
4,102,994 + DZA65_RS18985 0.75 +0.8
4,102,994 + DZA65_RS18985 0.75 -1.4
4,102,994 + DZA65_RS18985 0.75 +0.8
4,102,994 + DZA65_RS18985 0.75 +0.3
4,102,994 + DZA65_RS18985 0.75 +0.9
4,102,994 + DZA65_RS18985 0.75 +1.4
4,102,994 + DZA65_RS18985 0.75 -0.0
4,102,994 + DZA65_RS18985 0.75 +0.4
4,102,994 + DZA65_RS18985 0.75 +0.0
4,102,994 + DZA65_RS18985 0.75 -0.1
4,102,994 + DZA65_RS18985 0.75 -0.4
4,102,994 + DZA65_RS18985 0.75 -1.5
4,102,994 + DZA65_RS18985 0.75 +0.6
4,102,994 + DZA65_RS18985 0.75 +0.2
4,102,994 + DZA65_RS18985 0.75 +1.5
4,102,994 + DZA65_RS18985 0.75 -0.1
4,102,994 + DZA65_RS18985 0.75 -0.3
4,102,994 + DZA65_RS18985 0.75 -1.6
4,102,994 + DZA65_RS18985 0.75 -0.8
4,102,994 + DZA65_RS18985 0.75 -0.4
4,102,995 - DZA65_RS18985 0.75 -0.7
4,102,995 - DZA65_RS18985 0.75 -0.2
4,102,995 - DZA65_RS18985 0.75 -0.4
4,102,995 - DZA65_RS18985 0.75 +0.1
4,102,995 - DZA65_RS18985 0.75 -0.5
4,102,995 - DZA65_RS18985 0.75 -0.1
4,102,995 - DZA65_RS18985 0.75 +0.0
4,102,995 - DZA65_RS18985 0.75 -1.0
4,102,995 - DZA65_RS18985 0.75 +0.6
4,102,995 - DZA65_RS18985 0.75 +0.2
4,102,995 - DZA65_RS18985 0.75 +0.2
4,102,995 - DZA65_RS18985 0.75 -0.4
4,102,995 - DZA65_RS18985 0.75 -0.1
4,103,142 - DZA65_RS18985 0.87 +0.6
4,103,210 + +0.8
4,103,210 + +0.4
4,103,210 + +1.6
4,103,211 - -0.4
4,103,271 + -0.4
4,103,271 + +0.4
4,103,271 + -0.2
4,103,278 + -2.0
4,103,279 - +0.8
4,103,279 - +1.7
4,103,296 + -0.6
4,103,297 - -1.4
4,103,297 - -1.2
4,103,299 + +2.2
4,103,300 - -2.4
4,103,345 + -0.4
4,103,346 - -0.0
4,103,346 - +1.1
4,103,358 + +0.8
4,103,358 + +0.4
4,103,426 + +0.6
4,103,426 + +0.2
4,103,485 + -0.4

Or see this region's nucleotide sequence