Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16845

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,638,432	-		DZA65_RS16835	0.74	+0.4
3,638,432	-		DZA65_RS16835	0.74	+1.1
3,638,506	+		DZA65_RS16835	0.79	-0.5
3,638,507	-		DZA65_RS16835	0.79	-0.9
3,638,508	+		DZA65_RS16835	0.79	-1.4
3,638,509	-		DZA65_RS16835	0.79	-1.7
3,638,509	-		DZA65_RS16835	0.79	+1.7
3,638,509	-		DZA65_RS16835	0.79	+0.8
3,638,594	+		DZA65_RS16835	0.85	+0.2
3,638,594	+		DZA65_RS16835	0.85	+1.7
3,638,595	-		DZA65_RS16835	0.85	+0.1
3,638,595	-		DZA65_RS16835	0.85	-0.4
3,638,595	-				-0.6
3,638,623	+		DZA65_RS16835	0.87	-1.4
3,638,624	-		DZA65_RS16835	0.87	-1.4
3,638,668	+		DZA65_RS16835	0.90	+1.4
3,638,668	+		DZA65_RS16835	0.90	+0.5
3,638,669	-		DZA65_RS16835	0.90	-0.3
3,638,675	-				+1.7
3,638,695	+				-0.5
3,638,695	+				+0.8
3,638,695	+				+0.1
3,638,696	-				-0.9
3,638,696	-				+0.9
3,638,696	-				+1.0
3,638,697	+				+1.4
3,638,697	+				+1.0
3,638,698	-				-0.6
3,638,698	-				-0.6
3,638,770	+				-1.6
3,638,796	-				-1.9
3,639,324	-				-0.5
3,639,324	-				-0.1
3,639,324	-				-1.9
3,639,340	-				+0.4
3,639,340	-				-0.1
3,639,340	-				+0.5
3,639,340	-				-0.6
3,639,340	-				-0.1
3,639,340	-				-1.5
3,639,355	+				+1.2
3,639,355	+				-1.1
3,639,355	+				-0.8
3,639,355	+				+0.2
3,639,355	+				-1.2
3,639,355	+				-0.4
3,639,355	+				+1.2
3,639,355	+				-0.4
3,639,355	+				-1.9
3,639,355	+				-0.6
3,639,355	+				+1.1
3,639,356	-				-0.5
3,639,356	-				+0.4
3,639,356	-				+1.5
3,639,356	-				-2.0
3,639,356	-				+0.4
3,639,356	-				-0.0
3,639,356	-				-0.1
3,639,356	-				-1.5
3,639,356	-				+0.5
3,639,356	-				+1.4
3,639,356	-				-0.1
3,639,358	+				+0.2
3,639,358	+				-0.0
3,639,358	+				+0.4
3,639,358	+				-0.3
3,639,358	+				+0.7
3,639,358	+				+0.5
3,639,359	-				+0.1
3,639,413	-				-1.2
3,639,413	-				+1.5
3,639,413	-				-0.9
3,639,488	+		DZA65_RS16845	0.14	+0.1
3,639,489	-		DZA65_RS16845	0.14	-0.1
3,639,489	-		DZA65_RS16845	0.14	+0.0
3,639,497	-		DZA65_RS16845	0.15	+0.1
3,639,585	+		DZA65_RS16845	0.25	+1.0
3,639,585	+		DZA65_RS16845	0.25	-0.7
3,639,586	-		DZA65_RS16845	0.25	-1.0
3,639,586	-		DZA65_RS16845	0.25	+0.2
3,639,622	+		DZA65_RS16845	0.29	-2.6
3,639,823	+		DZA65_RS16845	0.50	-1.6
3,639,824	-		DZA65_RS16845	0.51	+1.4
3,639,829	-		DZA65_RS16845	0.51	+0.1
3,639,844	+		DZA65_RS16845	0.53	-0.6
3,639,845	-		DZA65_RS16845	0.53	-1.4
3,639,845	-		DZA65_RS16845	0.53	+0.1
3,640,082	-		DZA65_RS16845	0.78	+0.2
3,640,082	-		DZA65_RS16845	0.78	-1.1
3,640,085	+		DZA65_RS16845	0.79	-0.1
3,640,085	+		DZA65_RS16845	0.79	-0.3
3,640,085	+		DZA65_RS16845	0.79	+0.4
3,640,085	+		DZA65_RS16845	0.79	+0.4
3,640,085	+		DZA65_RS16845	0.79	-1.2
3,640,086	-		DZA65_RS16845	0.79	+1.2
3,640,149	+		DZA65_RS16845	0.86	+1.5
3,640,150	-		DZA65_RS16845	0.86	+1.1
3,640,296	+				-1.6
3,640,296	+				+0.2
3,640,297	-				+1.0
3,640,297	-				+2.2
3,640,297	-				-0.2
3,640,302	+				+0.2
3,640,303	-				-1.4
3,640,393	+				-0.1
3,640,393	+				-0.7
3,640,393	+				+0.0
3,640,393	+				+0.1
3,640,393	+				-0.6
3,640,393	+				-2.6
3,640,394	-				-0.5
3,640,394	-				+0.4
3,640,394	-				+0.4
3,640,394	-				+1.4
3,640,397	+				+2.4
3,640,398	-				-0.4
3,640,398	-				-0.1
3,640,438	+				-0.4
3,640,438	+				+1.1
3,640,462	+				-0.2
3,640,463	-				-0.1
3,640,548	+		DZA65_RS16850	0.34	-0.9
3,640,548	+		DZA65_RS16850	0.34	+1.4
3,640,548	+		DZA65_RS16850	0.34	-1.9
3,640,548	+		DZA65_RS16850	0.34	-0.6
3,640,549	-		DZA65_RS16850	0.34	-1.4
3,640,549	-		DZA65_RS16850	0.34	-1.1
3,640,549	-		DZA65_RS16850	0.34	-0.2
3,640,549	-		DZA65_RS16850	0.34	-0.7
3,640,549	-		DZA65_RS16850	0.34	-1.3
3,640,591	+		DZA65_RS16850	0.46	+1.1
3,640,729	+		DZA65_RS16850	0.87	-0.0
3,640,729	+		DZA65_RS16850	0.87	-0.2
3,640,752	+				-0.2
3,640,752	+				-0.3
3,640,752	+				+0.1
3,640,753	-				-1.4
3,640,753	-				-0.2
3,640,753	-				+0.6
3,640,753	-				+1.0
3,640,764	+				+1.2
3,640,764	+				-1.9
3,640,765	-				+1.0
3,640,767	-				-0.6
3,640,773	+				+0.4
3,640,773	+				-0.1
3,640,773	+				+0.1
3,640,773	+				-1.2
3,640,773	+				-0.4
3,640,773	+				-0.4
3,640,773	+				+0.2
3,640,774	-				-2.2
3,640,774	-				+0.4
3,640,774	-				+0.7
3,640,774	-				+0.9
3,640,774	-				-1.2
3,640,827	-				+1.0
3,640,835	+				-1.7
3,640,836	-				-0.4
3,640,836	-				+0.3
3,640,836	-				-0.4
3,640,837	+				-1.2
3,640,837	+				+1.4
3,640,837	+				+1.7
3,640,838	-				+0.4
3,640,838	-				+0.1
3,640,838	-				-0.4
3,640,848	+				+0.2
3,640,848	+				+0.9
3,640,848	+				-0.2
3,640,848	+				+2.3
3,640,848	+				-0.2
3,640,849	-				+0.0
3,640,849	-				+0.5
3,640,849	-				+1.4
3,640,849	-				+1.0
3,640,849	-				+1.8
3,640,853	+				-0.0
3,640,891	+				+0.4
3,640,891	+				-0.5
3,640,891	+				+0.4
3,640,891	+				-0.9
3,640,892	-				+1.4
3,640,892	-				+1.4
3,640,905	+				+0.4
3,640,906	-				-0.8
3,640,988	+				+0.5
3,641,039	+				+0.4
3,641,039	+				+0.8
3,641,039	+				+0.6
3,641,039	+				-1.0
3,641,039	+				+0.3
3,641,039	+				-0.3
3,641,039	+				+0.8
3,641,039	+				-0.4
3,641,039	+				-0.9
3,641,039	+				+0.8
3,641,039	+				-0.4
3,641,039	+				+0.7
3,641,039	+				+0.4
3,641,040	-				+0.4
3,641,040	-				+0.2
3,641,040	-				+0.3
3,641,040	-				-0.8
3,641,040	-				-0.6
3,641,040	-				+0.4
3,641,040	-				+0.7
3,641,040	-				+0.8
3,641,040	-				+0.3
3,641,040	-				+0.1
3,641,040	-				-1.2
3,641,040	-				+0.1
3,641,042	+				+0.8
3,641,042	+				+0.6
3,641,043	-				+1.3
3,641,043	-				-0.0
3,641,043	-				+1.1
3,641,043	-				+1.3
3,641,046	+				-2.2
3,641,046	+				+3.7
3,641,046	+				+0.4
3,641,047	-				+0.1
3,641,047	-				-0.1
3,641,047	-				-0.3
3,641,047	-				-0.6
3,641,047	-				+0.2
3,641,139	-				-0.0
3,641,195	+				+0.2
3,641,195	+				-0.4
3,641,196	-				-0.1
3,641,210	-				+2.2
3,641,225	+				-1.3
3,641,225	+				-0.8
3,641,225	+				-0.1
3,641,226	-				+1.4
3,641,226	-				+1.0
3,641,226	-				-0.4
3,641,226	-				+0.3
3,641,228	+				+0.4
3,641,228	+				-0.7
3,641,228	+				+0.4
3,641,228	+				-1.2
3,641,228	+				+1.0
3,641,228	+				+0.2
3,641,229	-				+0.2
3,641,229	-				+0.2
3,641,229	-				+1.6
3,641,229	-				+0.6
3,641,251	-				-1.0