Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16285

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,532,239	-		DZA65_RS16280	0.27	+0.0
3,532,280	-		DZA65_RS16280	0.31	-1.1
3,532,295	+		DZA65_RS16280	0.32	-1.1
3,532,295	+		DZA65_RS16280	0.32	+0.3
3,532,295	+		DZA65_RS16280	0.32	+1.2
3,532,295	+		DZA65_RS16280	0.32	-0.2
3,532,295	+		DZA65_RS16280	0.32	-0.4
3,532,295	+		DZA65_RS16280	0.32	-0.3
3,532,296	-		DZA65_RS16280	0.32	+0.1
3,532,296	-		DZA65_RS16280	0.32	-0.4
3,532,296	-		DZA65_RS16280	0.32	-0.5
3,532,296	-		DZA65_RS16280	0.32	-0.9
3,532,297	+		DZA65_RS16280	0.32	+0.6
3,532,297	+		DZA65_RS16280	0.32	-0.4
3,532,298	-		DZA65_RS16280	0.32	-2.2
3,532,367	-				-0.7
3,532,367	-		DZA65_RS16280	0.38	+0.6
3,532,463	+		DZA65_RS16280	0.46	+0.7
3,532,464	-		DZA65_RS16280	0.46	-1.7
3,532,544	+		DZA65_RS16280	0.53	-0.7
3,532,550	+		DZA65_RS16280	0.53	-0.7
3,532,551	-		DZA65_RS16280	0.53	+0.8
3,532,551	-		DZA65_RS16280	0.53	-1.8
3,532,551	-		DZA65_RS16280	0.53	+0.1
3,532,570	+		DZA65_RS16280	0.55	-1.2
3,532,628	+		DZA65_RS16280	0.60	+1.2
3,532,628	+		DZA65_RS16280	0.60	+0.9
3,532,628	+		DZA65_RS16280	0.60	-0.7
3,532,644	+		DZA65_RS16280	0.61	+1.3
3,532,645	-		DZA65_RS16280	0.61	+0.1
3,532,645	-		DZA65_RS16280	0.61	+1.0
3,532,677	-		DZA65_RS16280	0.64	-0.5
3,532,677	-		DZA65_RS16280	0.64	-1.0
3,532,678	+		DZA65_RS16280	0.64	+0.6
3,532,678	+		DZA65_RS16280	0.64	+0.5
3,532,678	+		DZA65_RS16280	0.64	-0.2
3,532,679	-		DZA65_RS16280	0.64	-0.0
3,532,679	-		DZA65_RS16280	0.64	+0.6
3,532,679	-		DZA65_RS16280	0.64	+0.2
3,532,679	-		DZA65_RS16280	0.64	+0.3
3,532,679	-		DZA65_RS16280	0.64	+0.0
3,532,679	-		DZA65_RS16280	0.64	-0.5
3,532,679	-		DZA65_RS16280	0.64	-0.2
3,532,720	+		DZA65_RS16280	0.67	-0.7
3,532,720	+		DZA65_RS16280	0.67	+0.3
3,532,721	-		DZA65_RS16280	0.67	+1.0
3,532,721	-		DZA65_RS16280	0.67	-1.0
3,532,721	-		DZA65_RS16280	0.67	-2.0
3,532,721	-		DZA65_RS16280	0.67	+0.0
3,532,721	-		DZA65_RS16280	0.67	-0.8
3,532,721	-		DZA65_RS16280	0.67	-0.1
3,532,723	-		DZA65_RS16280	0.67	-1.0
3,532,723	-		DZA65_RS16280	0.67	-1.0
3,532,723	-		DZA65_RS16280	0.67	+1.9
3,532,742	+		DZA65_RS16280	0.69	-0.0
3,532,743	-		DZA65_RS16280	0.69	+0.3
3,532,882	-				+0.9
3,532,911	+		DZA65_RS16280	0.83	+0.8
3,532,911	+		DZA65_RS16280	0.83	-1.5
3,532,911	+		DZA65_RS16280	0.83	+1.2
3,532,911	+		DZA65_RS16280	0.83	+1.3
3,532,911	+		DZA65_RS16280	0.83	+1.3
3,532,960	+		DZA65_RS16280	0.87	-0.4
3,532,960	+		DZA65_RS16280	0.87	-0.0
3,532,973	+		DZA65_RS16280	0.88	+0.9
3,532,973	+		DZA65_RS16280	0.88	-2.4
3,532,974	-		DZA65_RS16280	0.88	+0.3
3,533,037	-				-0.3
3,533,078	+				-1.4
3,533,092	-				+0.1
3,533,106	+				+1.1
3,533,106	+				+0.3
3,533,119	+				+1.3
3,533,119	+				+0.8
3,533,130	+				+0.7
3,533,135	+				-1.0
3,533,136	-				+0.9
3,533,207	+		DZA65_RS16285	0.17	-0.0
3,533,238	-		DZA65_RS16285	0.24	+0.1
3,533,240	+		DZA65_RS16285	0.25	-0.7
3,533,240	+		DZA65_RS16285	0.25	-0.1
3,533,265	-		DZA65_RS16285	0.31	-0.5
3,533,265	-		DZA65_RS16285	0.31	+0.0
3,533,319	+		DZA65_RS16285	0.44	-0.4
3,533,319	+		DZA65_RS16285	0.44	-1.5
3,533,319	+		DZA65_RS16285	0.44	-0.0
3,533,319	+		DZA65_RS16285	0.44	-1.5
3,533,319	+		DZA65_RS16285	0.44	+1.3
3,533,320	-		DZA65_RS16285	0.44	-1.0
3,533,320	-		DZA65_RS16285	0.44	+1.1
3,533,320	-		DZA65_RS16285	0.44	+0.1
3,533,320	-		DZA65_RS16285	0.44	-0.4
3,533,320	-		DZA65_RS16285	0.44	-0.5
3,533,320	-		DZA65_RS16285	0.44	-0.1
3,533,333	+		DZA65_RS16285	0.47	-0.7
3,533,412	+		DZA65_RS16285	0.66	-0.9
3,533,412	+		DZA65_RS16285	0.66	+0.1
3,533,451	+		DZA65_RS16285	0.75	+0.4
3,533,451	+		DZA65_RS16285	0.75	-1.2
3,533,452	-		DZA65_RS16285	0.75	+0.1
3,533,458	-		DZA65_RS16285	0.77	-0.4
3,533,462	+		DZA65_RS16285	0.78	+0.2
3,533,463	-		DZA65_RS16285	0.78	-0.8
3,533,477	+		DZA65_RS16285	0.81	+0.3
3,533,477	+		DZA65_RS16285	0.81	+0.3
3,533,489	+		DZA65_RS16285	0.84	-0.1
3,533,493	+		DZA65_RS16285	0.85	-1.5
3,533,494	-		DZA65_RS16285	0.85	-1.2
3,533,494	-		DZA65_RS16285	0.85	-0.5
3,533,534	+				+1.9
3,533,586	+				-0.3
3,533,586	+				+0.3
3,533,616	-				+0.2
3,533,631	-		DZA65_RS16290	0.12	-0.1
3,533,631	-		DZA65_RS16290	0.12	+0.1
3,533,633	+		DZA65_RS16290	0.12	+1.1
3,533,634	-		DZA65_RS16290	0.13	-0.7
3,533,671	-		DZA65_RS16290	0.23	-0.0
3,533,671	-		DZA65_RS16290	0.23	-0.5
3,533,727	+		DZA65_RS16290	0.38	-0.1
3,533,816	+		DZA65_RS16290	0.62	+0.3
3,533,816	+		DZA65_RS16290	0.62	+1.8
3,533,817	-		DZA65_RS16290	0.62	-0.2
3,533,817	-		DZA65_RS16290	0.62	-0.2
3,533,817	-		DZA65_RS16290	0.62	-1.2
3,533,817	-		DZA65_RS16290	0.62	+0.3
3,533,901	-		DZA65_RS16290	0.85	+1.1
3,533,901	-		DZA65_RS16290	0.85	+0.5
3,533,940	+				+0.2
3,533,940	+				-0.5
3,533,943	+				+0.3
3,533,943	+				+0.2
3,533,943	+				-0.1
3,533,944	-				-0.1
3,533,975	+				+0.1
3,533,975	+				+0.8
3,533,975	+				+1.3
3,533,976	-				-0.3
3,533,976	-				-0.0
3,533,976	-				-0.4
3,533,980	+				+1.2
3,533,989	+				-0.7
3,533,989	+				+0.8
3,533,989	+				-0.0
3,533,990	-				+0.6
3,533,990	-				+0.5
3,533,990	-				+0.7
3,534,038	+		DZA65_RS16295	0.16	-0.7
3,534,038	+		DZA65_RS16295	0.16	-0.1
3,534,040	+		DZA65_RS16295	0.16	+0.3
3,534,041	-		DZA65_RS16295	0.16	+0.2
3,534,041	-		DZA65_RS16295	0.16	+0.2
3,534,041	-		DZA65_RS16295	0.16	-0.9
3,534,063	-		DZA65_RS16295	0.20	-1.2
3,534,092	+		DZA65_RS16295	0.26	+1.7
3,534,092	+		DZA65_RS16295	0.26	+0.1
3,534,156	-		DZA65_RS16295	0.37	+2.0
3,534,175	+		DZA65_RS16295	0.41	-0.0
3,534,175	+		DZA65_RS16295	0.41	-0.1
3,534,175	+		DZA65_RS16295	0.41	-1.8
3,534,175	+		DZA65_RS16295	0.41	+0.3
3,534,175	+		DZA65_RS16295	0.41	+0.7
3,534,175	+		DZA65_RS16295	0.41	-0.4
3,534,175	+		DZA65_RS16295	0.41	-0.8
3,534,175	+		DZA65_RS16295	0.41	+0.7
3,534,176	-		DZA65_RS16295	0.41	-0.8
3,534,176	-		DZA65_RS16295	0.41	-0.8
3,534,176	-		DZA65_RS16295	0.41	+0.3
3,534,186	-		DZA65_RS16295	0.43	+0.8
3,534,215	+		DZA65_RS16295	0.48	-0.7
3,534,216	-		DZA65_RS16295	0.48	+0.2
3,534,216	-		DZA65_RS16295	0.48	+1.5
3,534,293	+		DZA65_RS16295	0.62	-0.7
3,534,293	+		DZA65_RS16295	0.62	+0.3
3,534,294	-		DZA65_RS16295	0.63	+0.9
3,534,294	-		DZA65_RS16295	0.63	+1.9
3,534,297	+		DZA65_RS16295	0.63	-1.2
3,534,446	+				+0.2
3,534,446	+				-1.7
3,534,463	-				-1.0
3,534,463	-				+1.3
3,534,463	-				-2.2
3,534,463	-				-1.7
3,534,537	+				-1.5
3,534,537	+				+1.5
3,534,538	-				-0.0
3,534,538	-				-1.2