Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16215

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,516,696	+		DZA65_RS16210	0.28	-1.1
3,516,708	+		DZA65_RS16210	0.29	+0.3
3,516,708	+		DZA65_RS16210	0.29	-1.5
3,516,708	+		DZA65_RS16210	0.29	+0.8
3,516,709	-		DZA65_RS16210	0.29	-0.5
3,516,709	-		DZA65_RS16210	0.29	-0.2
3,516,709	-		DZA65_RS16210	0.29	-0.3
3,516,709	-		DZA65_RS16210	0.29	-0.7
3,516,709	-		DZA65_RS16210	0.29	-1.2
3,516,709	-		DZA65_RS16210	0.29	+0.8
3,516,826	+		DZA65_RS16210	0.39	-0.1
3,516,826	+		DZA65_RS16210	0.39	+0.9
3,516,826	+		DZA65_RS16210	0.39	+2.3
3,516,827	-		DZA65_RS16210	0.39	+0.3
3,516,903	+		DZA65_RS16210	0.45	-0.0
3,516,903	+		DZA65_RS16210	0.45	-0.2
3,516,903	+		DZA65_RS16210	0.45	-0.1
3,516,903	+		DZA65_RS16210	0.45	+0.9
3,516,903	+		DZA65_RS16210	0.45	-1.2
3,516,904	-		DZA65_RS16210	0.45	+0.9
3,516,904	-		DZA65_RS16210	0.45	+0.2
3,516,904	-		DZA65_RS16210	0.45	-0.0
3,516,904	-		DZA65_RS16210	0.45	-2.0
3,516,904	-		DZA65_RS16210	0.45	-0.3
3,516,905	+		DZA65_RS16210	0.45	-0.0
3,516,905	+		DZA65_RS16210	0.45	-0.1
3,516,905	+		DZA65_RS16210	0.45	-1.0
3,517,059	+		DZA65_RS16210	0.57	+0.9
3,517,059	+		DZA65_RS16210	0.57	-0.7
3,517,059	+		DZA65_RS16210	0.57	+0.1
3,517,059	+		DZA65_RS16210	0.57	-0.9
3,517,059	+		DZA65_RS16210	0.57	-0.5
3,517,059	+		DZA65_RS16210	0.57	+0.5
3,517,059	+		DZA65_RS16210	0.57	-1.3
3,517,059	+		DZA65_RS16210	0.57	-0.5
3,517,059	+		DZA65_RS16210	0.57	+0.1
3,517,059	+		DZA65_RS16210	0.57	+1.3
3,517,059	+		DZA65_RS16210	0.57	-1.2
3,517,060	-		DZA65_RS16210	0.57	+0.1
3,517,060	-		DZA65_RS16210	0.57	+0.1
3,517,060	-				+2.2
3,517,060	-		DZA65_RS16210	0.57	+0.3
3,517,060	-		DZA65_RS16210	0.57	+0.3
3,517,060	-		DZA65_RS16210	0.57	+0.9
3,517,060	-		DZA65_RS16210	0.57	-0.1
3,517,060	-		DZA65_RS16210	0.57	+1.8
3,517,060	-		DZA65_RS16210	0.57	-2.0
3,517,060	-		DZA65_RS16210	0.57	-0.4
3,517,060	-		DZA65_RS16210	0.57	-1.4
3,517,060	-		DZA65_RS16210	0.57	+1.1
3,517,060	-		DZA65_RS16210	0.57	-0.7
3,517,060	-		DZA65_RS16210	0.57	+0.3
3,517,060	-		DZA65_RS16210	0.57	+1.2
3,517,062	+		DZA65_RS16210	0.57	+0.8
3,517,062	+		DZA65_RS16210	0.57	+0.3
3,517,062	+		DZA65_RS16210	0.57	+0.3
3,517,063	-		DZA65_RS16210	0.58	+2.1
3,517,063	-		DZA65_RS16210	0.58	-1.5
3,517,063	-		DZA65_RS16210	0.58	+0.2
3,517,068	+		DZA65_RS16210	0.58	-0.7
3,517,194	+		DZA65_RS16210	0.68	+1.1
3,517,194	+		DZA65_RS16210	0.68	+0.3
3,517,194	+		DZA65_RS16210	0.68	-0.9
3,517,194	+		DZA65_RS16210	0.68	-0.1
3,517,194	+				+0.8
3,517,194	+		DZA65_RS16210	0.68	-0.5
3,517,194	+		DZA65_RS16210	0.68	+0.6
3,517,194	+		DZA65_RS16210	0.68	+1.3
3,517,194	+		DZA65_RS16210	0.68	-0.5
3,517,194	+		DZA65_RS16210	0.68	-0.2
3,517,194	+		DZA65_RS16210	0.68	+0.9
3,517,194	+		DZA65_RS16210	0.68	-0.4
3,517,195	-		DZA65_RS16210	0.68	+0.3
3,517,195	-		DZA65_RS16210	0.68	+0.3
3,517,195	-		DZA65_RS16210	0.68	+1.0
3,517,195	-		DZA65_RS16210	0.68	+1.7
3,517,195	-		DZA65_RS16210	0.68	+0.8
3,517,195	-		DZA65_RS16210	0.68	-2.0
3,517,195	-		DZA65_RS16210	0.68	-0.3
3,517,195	-		DZA65_RS16210	0.68	-1.8
3,517,195	-		DZA65_RS16210	0.68	-0.2
3,517,195	-		DZA65_RS16210	0.68	+1.3
3,517,195	-		DZA65_RS16210	0.68	-1.2
3,517,281	+		DZA65_RS16210	0.75	-0.6
3,517,282	-		DZA65_RS16210	0.75	-1.1
3,517,337	+		DZA65_RS16210	0.79	+0.3
3,517,337	+		DZA65_RS16210	0.79	+1.1
3,517,338	-		DZA65_RS16210	0.80	-0.5
3,517,338	-		DZA65_RS16210	0.80	+0.2
3,517,341	+		DZA65_RS16210	0.80	+0.3
3,517,342	-		DZA65_RS16210	0.80	-0.7
3,517,342	-		DZA65_RS16210	0.80	-1.2
3,517,403	+		DZA65_RS16210	0.85	-2.0
3,517,403	+		DZA65_RS16210	0.85	-0.6
3,517,404	-		DZA65_RS16210	0.85	+1.7
3,517,404	-		DZA65_RS16210	0.85	+0.6
3,517,404	-		DZA65_RS16210	0.85	+0.5
3,517,452	+		DZA65_RS16210	0.89	-1.6
3,517,452	+		DZA65_RS16210	0.89	-1.0
3,517,452	+		DZA65_RS16210	0.89	-2.5
3,517,453	-		DZA65_RS16210	0.89	-2.0
3,517,453	-		DZA65_RS16210	0.89	+0.0
3,517,489	+				+0.8
3,517,489	+				-0.1
3,517,490	-				-0.3
3,517,490	-				-0.7
3,517,490	-				-0.3
3,517,490	-				-0.8
3,517,565	+				-0.7
3,517,569	+				-0.7
3,517,598	+				-0.0
3,517,598	+				-1.2
3,517,598	+				+0.2
3,517,599	-				+0.9
3,517,599	-				-1.2
3,517,599	-				+0.2
3,517,599	-				-0.4
3,517,599	-				+1.3
3,517,602	+				+0.5
3,517,602	+				-0.5
3,517,603	-				+1.0
3,517,624	+				+0.3
3,517,624	+				+0.3
3,517,624	+				+0.4
3,517,624	+				+0.3
3,517,625	-				+0.6
3,517,625	-				-0.7
3,517,653	+				+0.4
3,517,653	+				-0.6
3,517,653	+				-0.1
3,517,653	+				-0.3
3,517,653	+				-0.7
3,517,654	-				-0.7
3,517,655	+				+1.4
3,517,655	+				-0.7
3,517,655	+				-0.8
3,517,656	-				+0.3
3,517,656	-				-0.0
3,517,656	-				+1.2
3,517,656	-				+0.3
3,517,676	+				+0.9
3,517,676	+				-0.6
3,517,676	+				-1.7
3,517,791	+		DZA65_RS16215	0.17	-2.7
3,517,792	-		DZA65_RS16215	0.17	-0.5
3,517,922	+		DZA65_RS16215	0.29	-0.1
3,518,049	+		DZA65_RS16215	0.41	-0.3
3,518,049	+		DZA65_RS16215	0.41	-1.9
3,518,259	+		DZA65_RS16215	0.60	+0.4
3,518,259	+		DZA65_RS16215	0.60	+1.2
3,518,259	+		DZA65_RS16215	0.60	-0.7
3,518,260	-		DZA65_RS16215	0.60	-0.2
3,518,260	-		DZA65_RS16215	0.60	-2.2
3,518,274	-		DZA65_RS16215	0.62	-1.7
3,518,282	-		DZA65_RS16215	0.62	-0.7
3,518,282	-		DZA65_RS16215	0.62	-2.2
3,518,295	+		DZA65_RS16215	0.64	+1.2
3,518,295	+		DZA65_RS16215	0.64	+0.1
3,518,296	-		DZA65_RS16215	0.64	-0.2
3,518,296	-		DZA65_RS16215	0.64	-0.1
3,518,296	-		DZA65_RS16215	0.64	-1.0
3,518,312	+		DZA65_RS16215	0.65	+0.1
3,518,316	+		DZA65_RS16215	0.66	+1.7
3,518,316	+		DZA65_RS16215	0.66	+0.7
3,518,316	+		DZA65_RS16215	0.66	+1.3
3,518,317	-		DZA65_RS16215	0.66	+0.0
3,518,317	-		DZA65_RS16215	0.66	-0.7
3,518,361	-		DZA65_RS16215	0.70	-0.2
3,518,361	-		DZA65_RS16215	0.70	-1.4
3,518,484	+		DZA65_RS16215	0.81	-0.4
3,518,484	+		DZA65_RS16215	0.81	+0.7
3,518,484	+		DZA65_RS16215	0.81	+0.2
3,518,485	-		DZA65_RS16215	0.81	+0.1
3,518,835	-		DZA65_RS16220	0.13	-0.5
3,518,884	+		DZA65_RS16220	0.18	-0.3
3,518,884	+		DZA65_RS16220	0.18	+1.1
3,518,884	+		DZA65_RS16220	0.18	+0.3
3,518,885	-		DZA65_RS16220	0.18	-0.5
3,518,885	-		DZA65_RS16220	0.18	+0.7
3,518,885	-		DZA65_RS16220	0.18	-0.8
3,518,885	-		DZA65_RS16220	0.18	+1.3
3,518,900	+		DZA65_RS16220	0.19	+0.6
3,518,900	+		DZA65_RS16220	0.19	+1.8
3,518,900	+		DZA65_RS16220	0.19	+0.4
3,518,901	-		DZA65_RS16220	0.19	+0.9
3,518,923	+		DZA65_RS16220	0.21	-0.0
3,518,941	+		DZA65_RS16220	0.23	+0.5
3,518,941	+		DZA65_RS16220	0.23	+1.5
3,518,941	+		DZA65_RS16220	0.23	-0.9
3,518,942	-		DZA65_RS16220	0.23	+0.3
3,518,942	-		DZA65_RS16220	0.23	+2.2
3,518,947	+		DZA65_RS16220	0.23	-0.5
3,518,947	+		DZA65_RS16220	0.23	-1.7
3,518,947	+		DZA65_RS16220	0.23	+1.5
3,518,947	+		DZA65_RS16220	0.23	+0.8
3,518,947	+		DZA65_RS16220	0.23	+0.1
3,518,947	+		DZA65_RS16220	0.23	-1.0
3,518,947	+		DZA65_RS16220	0.23	-2.7
3,518,947	+		DZA65_RS16220	0.23	+0.3
3,518,947	+		DZA65_RS16220	0.23	-0.7
3,518,948	-		DZA65_RS16220	0.23	+0.8
3,518,948	-		DZA65_RS16220	0.23	+0.6
3,518,948	-		DZA65_RS16220	0.23	-0.7
3,518,948	-		DZA65_RS16220	0.23	-1.2
3,519,121	-		DZA65_RS16220	0.38	-1.2
3,519,152	+		DZA65_RS16220	0.41	+0.1
3,519,164	+		DZA65_RS16220	0.42	-0.8
3,519,164	+		DZA65_RS16220	0.42	+0.9
3,519,164	+		DZA65_RS16220	0.42	+0.1
3,519,165	-		DZA65_RS16220	0.42	-3.2
3,519,165	-		DZA65_RS16220	0.42	-0.3
3,519,166	+		DZA65_RS16220	0.42	+0.8
3,519,166	+		DZA65_RS16220	0.42	-0.0
3,519,167	-		DZA65_RS16220	0.42	+0.9
3,519,167	-		DZA65_RS16220	0.42	-1.4
3,519,167	-		DZA65_RS16220	0.42	+0.2
3,519,167	-		DZA65_RS16220	0.42	-0.2
3,519,167	-		DZA65_RS16220	0.42	+0.0
3,519,167	-		DZA65_RS16220	0.42	+1.0
3,519,167	-		DZA65_RS16220	0.42	-0.7
3,519,365	+		DZA65_RS16220	0.59	+0.1
3,519,366	-		DZA65_RS16220	0.59	+1.2
3,519,366	-		DZA65_RS16220	0.59	+0.8
3,519,366	-		DZA65_RS16220	0.59	-0.3
3,519,576	+		DZA65_RS16220	0.78	-0.9
3,519,576	+		DZA65_RS16220	0.78	-0.3
3,519,576	+		DZA65_RS16220	0.78	-0.2
3,519,576	+		DZA65_RS16220	0.78	-0.7
3,519,576	+		DZA65_RS16220	0.78	+0.5
3,519,577	-		DZA65_RS16220	0.78	-0.2
3,519,668	-		DZA65_RS16220	0.86	-0.2