Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16160

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,500,166	+		DZA65_RS16155	0.42	+1.0
3,500,166	+				+0.3
3,500,166	+		DZA65_RS16155	0.42	-1.0
3,500,166	+		DZA65_RS16155	0.42	-2.2
3,500,166	+		DZA65_RS16155	0.42	-0.7
3,500,166	+		DZA65_RS16155	0.42	-1.5
3,500,167	-		DZA65_RS16155	0.42	+1.3
3,500,167	-				+2.1
3,500,167	-		DZA65_RS16155	0.42	+0.8
3,500,167	-		DZA65_RS16155	0.42	-1.0
3,500,167	-		DZA65_RS16155	0.42	+0.6
3,500,167	-		DZA65_RS16155	0.42	+1.9
3,500,167	-		DZA65_RS16155	0.42	+0.3
3,500,171	+		DZA65_RS16155	0.42	+0.7
3,500,171	+		DZA65_RS16155	0.42	+0.0
3,500,172	-		DZA65_RS16155	0.42	-0.1
3,500,172	-		DZA65_RS16155	0.42	+0.9
3,500,220	+		DZA65_RS16155	0.46	+0.1
3,500,220	+		DZA65_RS16155	0.46	+1.3
3,500,220	+		DZA65_RS16155	0.46	+0.3
3,500,220	+		DZA65_RS16155	0.46	+0.8
3,500,220	+		DZA65_RS16155	0.46	-0.5
3,500,220	+		DZA65_RS16155	0.46	+0.7
3,500,221	-		DZA65_RS16155	0.47	-0.5
3,500,221	-		DZA65_RS16155	0.47	+1.0
3,500,221	-		DZA65_RS16155	0.47	-1.7
3,500,221	-		DZA65_RS16155	0.47	-1.2
3,500,244	+		DZA65_RS16155	0.48	+0.5
3,500,245	-		DZA65_RS16155	0.49	+0.1
3,500,245	-		DZA65_RS16155	0.49	+0.3
3,500,311	-		DZA65_RS16155	0.54	-0.7
3,500,388	+		DZA65_RS16155	0.61	-0.1
3,500,388	+		DZA65_RS16155	0.61	-0.4
3,500,518	-		DZA65_RS16155	0.72	-2.5
3,500,518	-		DZA65_RS16155	0.72	+0.2
3,500,527	-		DZA65_RS16155	0.72	-1.7
3,500,582	+		DZA65_RS16155	0.77	-1.1
3,500,583	-		DZA65_RS16155	0.77	+1.1
3,500,585	+		DZA65_RS16155	0.77	+0.8
3,500,621	+		DZA65_RS16155	0.80	+1.2
3,500,621	+		DZA65_RS16155	0.80	-0.6
3,500,766	-				-0.7
3,500,796	+				+0.5
3,500,796	+				+0.3
3,500,797	-				-1.2
3,500,797	-				-0.9
3,500,895	+				-0.9
3,500,895	+				+0.3
3,500,895	+				+0.3
3,500,896	-				-0.7
3,500,948	+				+0.8
3,500,948	+				-0.5
3,500,948	+				-0.8
3,500,948	+				+1.1
3,500,948	+				-1.7
3,500,948	+				+0.3
3,500,948	+				+0.2
3,500,948	+				+0.0
3,500,948	+				+0.8
3,500,949	-				-0.4
3,500,949	-				+0.3
3,500,949	-				+1.4
3,500,949	-				-0.2
3,500,949	-				-0.7
3,500,949	-				+1.5
3,500,949	-				-1.1
3,500,949	-				+0.2
3,500,949	-				-0.5
3,500,949	-				+0.6
3,500,949	-				-0.7
3,500,949	-				-0.0
3,500,949	-				-1.0
3,500,949	-				+0.3
3,500,957	+				-0.3
3,500,958	-				+0.3
3,500,995	+				+0.3
3,500,995	+				+0.9
3,500,995	+				+0.5
3,500,996	-				-0.1
3,500,998	+				+0.8
3,500,999	-				+0.0
3,501,004	-				+0.8
3,501,004	-				+0.1
3,501,006	+				+0.5
3,501,006	+				+4.0
3,501,006	+				+0.2
3,501,007	-				+0.1
3,501,026	+				+0.3
3,501,060	+				+2.0
3,501,060	+				-0.4
3,501,061	-				-0.3
3,501,064	+				+0.6
3,501,064	+				-0.2
3,501,065	-				-0.9
3,501,081	+				-0.8
3,501,081	+				-0.1
3,501,081	+				+0.0
3,501,082	-				+0.0
3,501,082	-				-1.0
3,501,110	-				+0.9
3,501,235	+		DZA65_RS16160	0.14	+0.6
3,501,236	-		DZA65_RS16160	0.14	+1.1
3,501,287	+		DZA65_RS16160	0.18	-0.7
3,501,287	+		DZA65_RS16160	0.18	-0.1
3,501,288	-		DZA65_RS16160	0.18	-0.8
3,501,288	-		DZA65_RS16160	0.18	+0.1
3,501,290	+		DZA65_RS16160	0.18	+1.2
3,501,290	+		DZA65_RS16160	0.18	-0.4
3,501,290	+		DZA65_RS16160	0.18	+0.1
3,501,290	+		DZA65_RS16160	0.18	-1.4
3,501,291	-		DZA65_RS16160	0.18	-0.0
3,501,291	-		DZA65_RS16160	0.18	-2.0
3,501,291	-		DZA65_RS16160	0.18	+0.9
3,501,336	+		DZA65_RS16160	0.22	-1.4
3,501,336	+		DZA65_RS16160	0.22	+0.6
3,501,336	+		DZA65_RS16160	0.22	+0.8
3,501,336	+		DZA65_RS16160	0.22	-0.1
3,501,337	-		DZA65_RS16160	0.22	+1.0
3,501,337	-		DZA65_RS16160	0.22	+0.3
3,501,340	+		DZA65_RS16160	0.22	-0.9
3,501,340	+		DZA65_RS16160	0.22	+0.7
3,501,340	+		DZA65_RS16160	0.22	+1.3
3,501,341	-		DZA65_RS16160	0.22	-0.7
3,501,341	-		DZA65_RS16160	0.22	-0.4
3,501,341	-		DZA65_RS16160	0.22	+0.2
3,501,341	-		DZA65_RS16160	0.22	+0.9
3,501,341	-		DZA65_RS16160	0.22	-2.1
3,501,341	-		DZA65_RS16160	0.22	+1.2
3,501,341	-		DZA65_RS16160	0.22	+0.4
3,501,438	+		DZA65_RS16160	0.30	+0.3
3,501,438	+		DZA65_RS16160	0.30	-0.2
3,501,438	+		DZA65_RS16160	0.30	-0.5
3,501,439	-		DZA65_RS16160	0.30	-0.3
3,501,590	+		DZA65_RS16160	0.42	+0.5
3,501,590	+		DZA65_RS16160	0.42	-1.5
3,501,591	-		DZA65_RS16160	0.42	+0.5
3,501,591	-		DZA65_RS16160	0.42	+0.8
3,501,639	+		DZA65_RS16160	0.46	+0.3
3,501,639	+		DZA65_RS16160	0.46	+1.1
3,501,640	-		DZA65_RS16160	0.46	-1.1
3,501,640	-		DZA65_RS16160	0.46	-2.0
3,501,640	-		DZA65_RS16160	0.46	+1.1
3,501,650	+		DZA65_RS16160	0.47	-1.4
3,501,713	+		DZA65_RS16160	0.52	-0.9
3,501,713	+		DZA65_RS16160	0.52	+0.9
3,501,713	+		DZA65_RS16160	0.52	+1.0
3,501,713	+		DZA65_RS16160	0.52	-0.4
3,501,713	+		DZA65_RS16160	0.52	-2.7
3,501,714	-		DZA65_RS16160	0.52	-0.8
3,501,714	-		DZA65_RS16160	0.52	-2.8
3,501,714	-		DZA65_RS16160	0.52	+0.1
3,501,714	-		DZA65_RS16160	0.52	-0.7
3,501,714	-		DZA65_RS16160	0.52	+0.7
3,501,714	-		DZA65_RS16160	0.52	-0.1
3,501,714	-		DZA65_RS16160	0.52	-0.4
3,501,730	+		DZA65_RS16160	0.54	-0.7
3,502,080	+		DZA65_RS16160	0.82	+0.3
3,502,288	+				-0.0
3,502,288	+				-1.8
3,502,288	+				+0.1
3,502,288	+				-0.7
3,502,289	-				-0.7
3,502,289	-				+0.2
3,502,289	-				+0.1
3,502,289	-				+0.3
3,502,368	+				-1.4
3,502,368	+				-0.9
3,502,369	-				+0.5
3,502,369	-				-0.4
3,502,491	+				-0.3
3,502,492	-				-0.6
3,502,492	-				-0.0
3,502,492	-				-1.8
3,502,492	-				-3.2
3,502,492	-				-2.2
3,502,492	-				-0.9
3,502,732	+		DZA65_RS16165	0.14	+0.6
3,502,732	+		DZA65_RS16165	0.14	-0.3
3,502,732	+		DZA65_RS16165	0.14	+0.1
3,502,732	+		DZA65_RS16165	0.14	-1.1
3,502,732	+		DZA65_RS16165	0.14	+0.3
3,502,733	-		DZA65_RS16165	0.14	-3.0
3,502,733	-		DZA65_RS16165	0.14	-2.1
3,502,733	-		DZA65_RS16165	0.14	-1.4
3,502,733	-		DZA65_RS16165	0.14	-1.5
3,502,733	-		DZA65_RS16165	0.14	+1.1
3,502,733	-		DZA65_RS16165	0.14	-0.7
3,502,733	-		DZA65_RS16165	0.14	-0.7
3,502,733	-		DZA65_RS16165	0.14	+0.1
3,502,733	-		DZA65_RS16165	0.14	+0.9
3,502,733	-		DZA65_RS16165	0.14	-1.2
3,502,936	+		DZA65_RS16165	0.20	-1.2