Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15770

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,424,155	+		DZA65_RS15765	0.20	-0.9
3,424,155	+		DZA65_RS15765	0.20	-1.7
3,424,155	+		DZA65_RS15765	0.20	-1.1
3,424,156	-		DZA65_RS15765	0.20	+0.9
3,424,156	-		DZA65_RS15765	0.20	-2.0
3,424,156	-		DZA65_RS15765	0.20	-1.4
3,424,156	-		DZA65_RS15765	0.20	-1.2
3,424,232	+		DZA65_RS15765	0.26	+0.4
3,424,232	+		DZA65_RS15765	0.26	+0.9
3,424,232	+		DZA65_RS15765	0.26	-0.2
3,424,232	+		DZA65_RS15765	0.26	-0.4
3,424,232	+		DZA65_RS15765	0.26	-3.2
3,424,232	+		DZA65_RS15765	0.26	+0.3
3,424,233	-		DZA65_RS15765	0.27	-0.7
3,424,233	-		DZA65_RS15765	0.27	-1.5
3,424,233	-		DZA65_RS15765	0.27	-0.6
3,424,234	+		DZA65_RS15765	0.27	-2.0
3,424,234	+		DZA65_RS15765	0.27	-0.0
3,424,235	-		DZA65_RS15765	0.27	+0.5
3,424,235	-		DZA65_RS15765	0.27	+0.9
3,424,241	-		DZA65_RS15765	0.27	-0.9
3,424,241	-		DZA65_RS15765	0.27	-0.7
3,424,274	-		DZA65_RS15765	0.30	+0.5
3,424,274	-		DZA65_RS15765	0.30	+0.5
3,424,330	+		DZA65_RS15765	0.35	-0.1
3,424,331	-		DZA65_RS15765	0.35	-0.3
3,424,331	-		DZA65_RS15765	0.35	+0.6
3,424,336	+		DZA65_RS15765	0.35	-2.3
3,424,336	+		DZA65_RS15765	0.35	-0.5
3,424,336	+		DZA65_RS15765	0.35	+0.4
3,424,336	+		DZA65_RS15765	0.35	-0.6
3,424,336	+		DZA65_RS15765	0.35	-1.9
3,424,336	+		DZA65_RS15765	0.35	-0.3
3,424,336	+		DZA65_RS15765	0.35	-2.0
3,424,336	+		DZA65_RS15765	0.35	+0.1
3,424,336	+		DZA65_RS15765	0.35	-2.0
3,424,337	-		DZA65_RS15765	0.35	-1.2
3,424,337	-		DZA65_RS15765	0.35	-0.2
3,424,337	-		DZA65_RS15765	0.35	-0.4
3,424,337	-		DZA65_RS15765	0.35	-0.8
3,424,337	-		DZA65_RS15765	0.35	-0.4
3,424,337	-		DZA65_RS15765	0.35	+0.4
3,424,337	-		DZA65_RS15765	0.35	+1.0
3,424,337	-		DZA65_RS15765	0.35	-0.9
3,424,337	-		DZA65_RS15765	0.35	-0.2
3,424,337	-		DZA65_RS15765	0.35	-0.7
3,424,337	-		DZA65_RS15765	0.35	+0.1
3,424,337	-		DZA65_RS15765	0.35	+0.2
3,424,337	-		DZA65_RS15765	0.35	-0.2
3,424,337	-		DZA65_RS15765	0.35	-0.3
3,424,337	-		DZA65_RS15765	0.35	-0.4
3,424,598	+		DZA65_RS15765	0.57	+0.3
3,424,648	+		DZA65_RS15765	0.61	-0.8
3,424,648	+		DZA65_RS15765	0.61	-2.0
3,424,648	+		DZA65_RS15765	0.61	-0.3
3,424,648	+		DZA65_RS15765	0.61	+0.1
3,424,648	+		DZA65_RS15765	0.61	-1.3
3,424,648	+		DZA65_RS15765	0.61	-0.1
3,424,648	+		DZA65_RS15765	0.61	-0.9
3,424,648	+		DZA65_RS15765	0.61	-1.5
3,424,648	+		DZA65_RS15765	0.61	-2.0
3,424,648	+		DZA65_RS15765	0.61	-2.3
3,424,648	+		DZA65_RS15765	0.61	-0.2
3,424,648	+		DZA65_RS15765	0.61	-1.1
3,424,648	+		DZA65_RS15765	0.61	-1.5
3,424,649	-		DZA65_RS15765	0.61	-0.9
3,424,649	-		DZA65_RS15765	0.61	-0.2
3,424,649	-		DZA65_RS15765	0.61	-0.1
3,424,649	-		DZA65_RS15765	0.61	-0.4
3,424,649	-		DZA65_RS15765	0.61	-0.4
3,424,649	-		DZA65_RS15765	0.61	-0.9
3,424,649	-		DZA65_RS15765	0.61	+0.3
3,424,649	-		DZA65_RS15765	0.61	+0.5
3,424,649	-		DZA65_RS15765	0.61	+0.1
3,424,649	-		DZA65_RS15765	0.61	+0.2
3,424,649	-		DZA65_RS15765	0.61	-1.2
3,424,649	-		DZA65_RS15765	0.61	-0.1
3,424,649	-		DZA65_RS15765	0.61	-0.6
3,424,652	+		DZA65_RS15765	0.61	+1.0
3,424,652	+		DZA65_RS15765	0.61	-0.0
3,424,652	+		DZA65_RS15765	0.61	-0.2
3,424,652	+		DZA65_RS15765	0.61	-0.4
3,424,652	+		DZA65_RS15765	0.61	-2.5
3,424,652	+		DZA65_RS15765	0.61	-0.7
3,424,652	+		DZA65_RS15765	0.61	-0.4
3,424,653	-		DZA65_RS15765	0.61	-0.3
3,424,653	-		DZA65_RS15765	0.61	-0.7
3,424,653	-		DZA65_RS15765	0.61	-0.3
3,424,653	-		DZA65_RS15765	0.61	-0.6
3,424,653	-		DZA65_RS15765	0.61	-1.7
3,424,653	-		DZA65_RS15765	0.61	-2.2
3,424,653	-		DZA65_RS15765	0.61	-0.3
3,424,653	-		DZA65_RS15765	0.61	-0.5
3,424,653	-		DZA65_RS15765	0.61	-1.0
3,424,653	-		DZA65_RS15765	0.61	-0.7
3,424,653	-		DZA65_RS15765	0.61	-1.1
3,424,653	-		DZA65_RS15765	0.61	-0.2
3,424,678	+		DZA65_RS15765	0.64	+0.3
3,424,678	+		DZA65_RS15765	0.64	-0.0
3,424,679	-		DZA65_RS15765	0.64	-0.6
3,424,742	-		DZA65_RS15765	0.69	-1.2
3,424,880	+		DZA65_RS15765	0.80	-1.3
3,424,881	-		DZA65_RS15765	0.81	-0.2
3,424,881	-		DZA65_RS15765	0.81	-1.4
3,424,882	+		DZA65_RS15765	0.81	-1.3
3,424,883	-		DZA65_RS15765	0.81	-0.3
3,424,883	-		DZA65_RS15765	0.81	+0.2
3,424,883	-		DZA65_RS15765	0.81	+0.2
3,424,883	-		DZA65_RS15765	0.81	-0.0
3,424,942	+		DZA65_RS15765	0.86	-2.2
3,424,942	+		DZA65_RS15765	0.86	-0.5
3,424,942	+		DZA65_RS15765	0.86	-1.4
3,424,986	-		DZA65_RS15765	0.89	+3.0
3,424,986	-		DZA65_RS15765	0.89	-1.5
3,425,000	+				-2.0
3,425,001	-				+0.3
3,425,030	+				+0.8
3,425,091	+				-3.5
3,425,091	+				-2.3
3,425,178	+				+0.3
3,425,223	+		DZA65_RS15770	0.11	+1.0
3,425,223	+		DZA65_RS15770	0.11	-1.0
3,425,224	-				-0.1
3,425,265	+		DZA65_RS15770	0.16	-1.0
3,425,265	+		DZA65_RS15770	0.16	+0.7
3,425,265	+		DZA65_RS15770	0.16	+0.7
3,425,265	+		DZA65_RS15770	0.16	+3.1
3,425,266	-		DZA65_RS15770	0.16	-1.7
3,425,266	-		DZA65_RS15770	0.16	-0.2
3,425,266	-		DZA65_RS15770	0.16	+0.7
3,425,286	+		DZA65_RS15770	0.19	-0.3
3,425,286	+		DZA65_RS15770	0.19	+0.1
3,425,286	+		DZA65_RS15770	0.19	-0.5
3,425,286	+		DZA65_RS15770	0.19	-1.0
3,425,286	+		DZA65_RS15770	0.19	-0.7
3,425,286	+		DZA65_RS15770	0.19	-0.5
3,425,286	+		DZA65_RS15770	0.19	+1.0
3,425,287	-		DZA65_RS15770	0.19	-0.9
3,425,287	-		DZA65_RS15770	0.19	-1.3
3,425,287	-		DZA65_RS15770	0.19	+1.5
3,425,287	-		DZA65_RS15770	0.19	-0.2
3,425,287	-		DZA65_RS15770	0.19	-0.4
3,425,287	-		DZA65_RS15770	0.19	+0.3
3,425,287	-		DZA65_RS15770	0.19	-1.3
3,425,287	-		DZA65_RS15770	0.19	-0.3
3,425,287	-				-1.3
3,425,291	-		DZA65_RS15770	0.19	+0.3
3,425,306	+		DZA65_RS15770	0.21	+0.1
3,425,306	+		DZA65_RS15770	0.21	-0.7
3,425,306	+		DZA65_RS15770	0.21	+0.5
3,425,306	+		DZA65_RS15770	0.21	+0.6
3,425,306	+		DZA65_RS15770	0.21	-0.4
3,425,307	-		DZA65_RS15770	0.21	+1.0
3,425,307	-		DZA65_RS15770	0.21	-2.3
3,425,393	-		DZA65_RS15770	0.30	-0.0
3,425,490	+		DZA65_RS15770	0.41	+0.3
3,425,490	+		DZA65_RS15770	0.41	+1.2
3,425,490	+		DZA65_RS15770	0.41	-0.3
3,425,491	-		DZA65_RS15770	0.41	+1.6
3,425,491	-		DZA65_RS15770	0.41	+0.2
3,425,491	-		DZA65_RS15770	0.41	+1.3
3,425,491	-		DZA65_RS15770	0.41	-1.3
3,425,491	-		DZA65_RS15770	0.41	+0.7
3,425,491	-		DZA65_RS15770	0.41	-0.5
3,425,491	-		DZA65_RS15770	0.41	-0.4
3,425,491	-		DZA65_RS15770	0.41	-1.7
3,425,491	-		DZA65_RS15770	0.41	-0.3
3,425,491	-		DZA65_RS15770	0.41	+0.5
3,425,520	+		DZA65_RS15770	0.45	-0.2
3,425,520	+		DZA65_RS15770	0.45	-0.9
3,425,521	-		DZA65_RS15770	0.45	+0.2
3,425,521	-		DZA65_RS15770	0.45	+0.6
3,425,521	-		DZA65_RS15770	0.45	+0.2
3,425,521	-		DZA65_RS15770	0.45	-0.4
3,425,581	+		DZA65_RS15770	0.51	-0.5
3,425,676	+		DZA65_RS15770	0.62	-1.7
3,425,696	+		DZA65_RS15770	0.64	-1.0
3,425,696	+		DZA65_RS15770	0.64	+0.3
3,425,696	+		DZA65_RS15770	0.64	-0.3
3,425,697	-		DZA65_RS15770	0.64	+0.9
3,425,697	-		DZA65_RS15770	0.64	+1.3
3,425,713	+		DZA65_RS15770	0.66	-0.6
3,425,714	-		DZA65_RS15770	0.66	-0.1
3,425,757	+		DZA65_RS15770	0.71	-0.7
3,425,787	+		DZA65_RS15770	0.74	+1.0
3,425,816	-		DZA65_RS15770	0.78	+0.8
3,425,881	-		DZA65_RS15770	0.85	+0.1
3,425,950	+				-1.0
3,425,995	+				-2.9
3,426,028	+				+0.5
3,426,028	+				-1.5
3,426,028	+				-1.1
3,426,134	-				+0.7
3,426,235	+		DZA65_RS15775	0.16	+0.3
3,426,235	+		DZA65_RS15775	0.16	-0.7
3,426,235	+		DZA65_RS15775	0.16	-1.3
3,426,235	+		DZA65_RS15775	0.16	-1.0
3,426,235	+		DZA65_RS15775	0.16	+1.9
3,426,235	+		DZA65_RS15775	0.16	-0.1
3,426,236	-		DZA65_RS15775	0.16	-1.7
3,426,236	-		DZA65_RS15775	0.16	+0.2
3,426,239	+		DZA65_RS15775	0.16	-0.2
3,426,239	+		DZA65_RS15775	0.16	-1.5
3,426,239	+		DZA65_RS15775	0.16	+0.3
3,426,239	+		DZA65_RS15775	0.16	-0.4
3,426,239	+		DZA65_RS15775	0.16	+2.1
3,426,240	-		DZA65_RS15775	0.16	+0.3
3,426,240	-		DZA65_RS15775	0.16	-0.9
3,426,240	-		DZA65_RS15775	0.16	-2.9
3,426,240	-		DZA65_RS15775	0.16	+0.3
3,426,240	-		DZA65_RS15775	0.16	+0.9
3,426,240	-		DZA65_RS15775	0.16	-0.1
3,426,240	-		DZA65_RS15775	0.16	+0.3
3,426,240	-		DZA65_RS15775	0.16	+0.1
3,426,268	+		DZA65_RS15775	0.18	-1.1
3,426,268	+		DZA65_RS15775	0.18	-0.1
3,426,269	-		DZA65_RS15775	0.19	-0.4
3,426,298	+		DZA65_RS15775	0.21	-1.9
3,426,298	+		DZA65_RS15775	0.21	-0.4
3,426,299	-		DZA65_RS15775	0.21	+0.3
3,426,299	-		DZA65_RS15775	0.21	-1.2
3,426,318	-		DZA65_RS15775	0.22	-0.5
3,426,370	+		DZA65_RS15775	0.26	-0.9
3,426,371	-		DZA65_RS15775	0.26	+0.0
3,426,614	+		DZA65_RS15775	0.45	-1.9
3,426,614	+		DZA65_RS15775	0.45	-1.3
3,426,614	+		DZA65_RS15775	0.45	+0.3
3,426,615	-		DZA65_RS15775	0.45	-1.3
3,426,632	+		DZA65_RS15775	0.46	-0.1
3,426,683	+		DZA65_RS15775	0.50	+0.7
3,426,683	+		DZA65_RS15775	0.50	-0.1
3,426,684	-		DZA65_RS15775	0.50	-1.1
3,426,684	-				-0.7
3,426,718	-		DZA65_RS15775	0.53	-0.2
3,426,758	+		DZA65_RS15775	0.56	-0.4
3,426,758	+		DZA65_RS15775	0.56	+0.7
3,426,759	-		DZA65_RS15775	0.56	+1.1
3,426,759	-		DZA65_RS15775	0.56	-0.7
3,426,759	-		DZA65_RS15775	0.56	-0.0
3,426,759	-		DZA65_RS15775	0.56	-0.4
3,426,759	-		DZA65_RS15775	0.56	+0.3
3,426,759	-		DZA65_RS15775	0.56	+0.9
3,426,759	-		DZA65_RS15775	0.56	+0.3
3,426,767	+		DZA65_RS15775	0.57	-1.6
3,426,838	+		DZA65_RS15775	0.62	+0.7
3,426,838	+		DZA65_RS15775	0.62	+0.8
3,426,838	+		DZA65_RS15775	0.62	-0.4
3,426,838	+		DZA65_RS15775	0.62	-0.9
3,426,838	+		DZA65_RS15775	0.62	-0.6
3,426,838	+		DZA65_RS15775	0.62	+0.6
3,426,838	+		DZA65_RS15775	0.62	-0.8
3,426,839	-		DZA65_RS15775	0.62	-1.1
3,426,839	-		DZA65_RS15775	0.62	+1.9
3,426,839	-		DZA65_RS15775	0.62	-2.5
3,426,839	-		DZA65_RS15775	0.62	+0.5
3,426,839	-		DZA65_RS15775	0.62	-2.3
3,426,839	-		DZA65_RS15775	0.62	+0.2
3,426,839	-		DZA65_RS15775	0.62	+1.0
3,426,839	-		DZA65_RS15775	0.62	-0.8
3,426,839	-		DZA65_RS15775	0.62	+0.5
3,426,839	-		DZA65_RS15775	0.62	-1.1
3,426,839	-		DZA65_RS15775	0.62	-0.8
3,426,846	-		DZA65_RS15775	0.63	-0.2
3,426,915	-		DZA65_RS15775	0.68	-1.3
3,426,915	-		DZA65_RS15775	0.68	+0.1