Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15570

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,374,546	+		DZA65_RS15560	0.23	-0.7
3,374,546	+		DZA65_RS15560	0.23	-0.6
3,374,546	+		DZA65_RS15560	0.23	-2.0
3,374,546	+		DZA65_RS15560	0.23	-1.0
3,374,546	+		DZA65_RS15560	0.23	-0.3
3,374,546	+		DZA65_RS15560	0.23	+0.2
3,374,546	+		DZA65_RS15560	0.23	+0.0
3,374,546	+		DZA65_RS15560	0.23	+0.5
3,374,546	+		DZA65_RS15560	0.23	-1.7
3,374,546	+		DZA65_RS15560	0.23	+0.1
3,374,546	+		DZA65_RS15560	0.23	-0.3
3,374,546	+		DZA65_RS15560	0.23	-0.9
3,374,547	-		DZA65_RS15560	0.23	-2.5
3,374,547	-		DZA65_RS15560	0.23	-1.9
3,374,547	-		DZA65_RS15560	0.23	-1.3
3,374,547	-		DZA65_RS15560	0.23	-0.4
3,374,547	-		DZA65_RS15560	0.23	-1.2
3,374,547	-		DZA65_RS15560	0.23	-0.3
3,374,547	-		DZA65_RS15560	0.23	-0.7
3,374,547	-		DZA65_RS15560	0.23	-0.3
3,374,547	-		DZA65_RS15560	0.23	-2.5
3,374,547	-		DZA65_RS15560	0.23	-0.3
3,374,547	-		DZA65_RS15560	0.23	+0.3
3,374,547	-		DZA65_RS15560	0.23	-3.0
3,374,643	+		DZA65_RS15560	0.35	-0.6
3,374,726	+		DZA65_RS15560	0.45	+0.1
3,374,967	+		DZA65_RS15560	0.75	-0.0
3,374,967	+		DZA65_RS15560	0.75	-0.7
3,374,968	-		DZA65_RS15560	0.76	-0.4
3,374,968	-		DZA65_RS15560	0.76	-1.6
3,375,065	+		DZA65_RS15560	0.88	-0.4
3,375,065	+		DZA65_RS15560	0.88	+1.9
3,375,065	+		DZA65_RS15560	0.88	+0.3
3,375,065	+		DZA65_RS15560	0.88	-0.7
3,375,065	+		DZA65_RS15560	0.88	-0.9
3,375,065	+				+1.3
3,375,066	-		DZA65_RS15560	0.88	+0.6
3,375,066	-		DZA65_RS15560	0.88	-2.4
3,375,197	+				+0.5
3,375,486	-		DZA65_RS15565	0.84	+1.0
3,375,500	+		DZA65_RS15565	0.89	+1.3
3,375,500	+		DZA65_RS15565	0.89	-0.7
3,375,500	+		DZA65_RS15565	0.89	+0.7
3,375,500	+		DZA65_RS15565	0.89	-0.1
3,375,501	-				-0.4
3,375,501	-				-1.3
3,375,531	+				-0.3
3,375,531	+				-0.3
3,375,531	+				-0.1
3,375,532	-				-0.3
3,375,532	-				+2.0
3,375,532	-				+1.7
3,375,541	+				-1.4
3,375,541	+				+0.6
3,375,541	+				+0.7
3,375,541	+				-0.6
3,375,541	+				-0.2
3,375,541	+				-1.5
3,375,541	+				+1.1
3,375,541	+				+0.1
3,375,541	+				+0.3
3,375,541	+				+0.3
3,375,541	+				+0.2
3,375,541	+				-0.1
3,375,541	+				+1.6
3,375,541	+				+0.8
3,375,541	+				-1.0
3,375,541	+				+0.3
3,375,541	+				+0.4
3,375,541	+				-1.1
3,375,541	+				+0.3
3,375,541	+				-2.3
3,375,541	+				+0.5
3,375,541	+				+0.9
3,375,541	+				-0.4
3,375,542	-				+0.2
3,375,542	-				+0.2
3,375,542	-				+0.6
3,375,542	-				-2.9
3,375,542	-				+0.6
3,375,542	-				+0.6
3,375,542	-				-1.1
3,375,542	-				-0.0
3,375,542	-				-2.7
3,375,542	-				-0.0
3,375,542	-				-0.7
3,375,542	-				-0.1
3,375,542	-				+0.9
3,375,542	-				-1.2
3,375,542	-				+0.0
3,375,542	-				-2.3
3,375,542	-				-0.3
3,375,542	-				-0.9
3,375,542	-				+1.1
3,375,542	-				+0.1
3,375,542	-				-0.2
3,375,542	-				-0.0
3,375,542	-				-0.2
3,375,542	-				+0.3
3,375,542	-				-0.7
3,375,542	-				+0.8
3,375,542	-				+1.6
3,375,560	+				-0.3
3,375,560	+				-2.7
3,375,561	-				-0.7
3,375,653	-				+0.6
3,375,653	-				-0.7
3,375,653	-				-2.3
3,375,653	-				-0.6
3,375,775	+				+1.3
3,375,775	+				-0.1
3,375,775	+				-2.7
3,375,775	+				+0.1
3,375,775	+				-0.7
3,375,776	-				+0.4
3,375,776	-				+0.5
3,375,776	-				+0.6
3,375,788	+				-0.1
3,375,789	-				+0.8
3,375,845	+				+0.5
3,375,934	+				-0.7
3,375,934	+				-1.7
3,375,934	+				-0.3
3,375,935	-				-0.3
3,375,939	-				+3.1
3,375,961	-				+1.9
3,376,025	-				-1.4
3,376,039	+				-0.4
3,376,039	+				-0.9
3,376,040	-				-0.6
3,376,067	+				-0.5
3,376,274	+				-0.7
3,376,473	+		DZA65_RS15570	0.11	+0.3
3,376,473	+		DZA65_RS15570	0.11	-0.5
3,376,473	+		DZA65_RS15570	0.11	+0.3
3,376,473	+		DZA65_RS15570	0.11	-1.0
3,376,474	-		DZA65_RS15570	0.11	+0.3
3,376,474	-		DZA65_RS15570	0.11	+0.6
3,376,474	-		DZA65_RS15570	0.11	+0.2
3,376,615	+		DZA65_RS15570	0.13	+0.9
3,376,615	+		DZA65_RS15570	0.13	-0.2
3,376,615	+		DZA65_RS15570	0.13	-0.4
3,376,615	+		DZA65_RS15570	0.13	+0.3
3,376,616	-		DZA65_RS15570	0.13	-1.6
3,376,616	-		DZA65_RS15570	0.13	+1.1
3,376,616	-		DZA65_RS15570	0.13	+0.5
3,376,616	-		DZA65_RS15570	0.13	-0.0
3,376,665	+		DZA65_RS15570	0.13	-0.2
3,376,665	+		DZA65_RS15570	0.13	-0.6
3,376,665	+		DZA65_RS15570	0.13	-0.6
3,376,666	-		DZA65_RS15570	0.13	+0.3
3,376,676	+				-0.3
3,376,685	+		DZA65_RS15570	0.14	+1.0
3,376,686	-		DZA65_RS15570	0.14	+0.6
3,376,883	-		DZA65_RS15570	0.16	+0.3
3,376,917	-		DZA65_RS15570	0.16	+1.4
3,376,930	+		DZA65_RS15570	0.16	-0.9
3,376,930	+		DZA65_RS15570	0.16	-0.1
3,376,930	+		DZA65_RS15570	0.16	-0.7
3,376,930	+		DZA65_RS15570	0.16	-0.7
3,376,930	+		DZA65_RS15570	0.16	+0.9
3,376,930	+		DZA65_RS15570	0.16	-0.4
3,376,930	+		DZA65_RS15570	0.16	+1.3
3,376,931	-		DZA65_RS15570	0.16	+0.6
3,376,931	-		DZA65_RS15570	0.16	-0.4
3,376,931	-		DZA65_RS15570	0.16	-0.4
3,377,000	-		DZA65_RS15570	0.17	+0.0
3,377,029	+		DZA65_RS15570	0.18	+0.9
3,377,029	+		DZA65_RS15570	0.18	-0.2
3,377,029	+		DZA65_RS15570	0.18	-0.4
3,377,029	+		DZA65_RS15570	0.18	+1.3
3,377,029	+		DZA65_RS15570	0.18	+0.6
3,377,030	-		DZA65_RS15570	0.18	+1.0
3,377,030	-		DZA65_RS15570	0.18	-1.1
3,377,044	-		DZA65_RS15570	0.18	-1.2
3,377,081	+		DZA65_RS15570	0.18	+0.8
3,377,081	+		DZA65_RS15570	0.18	+0.7
3,377,081	+		DZA65_RS15570	0.18	-0.8
3,377,201	-		DZA65_RS15570	0.20	+0.9
3,377,227	-		DZA65_RS15570	0.20	-0.0
3,377,236	+		DZA65_RS15570	0.20	+0.2
3,377,236	+		DZA65_RS15570	0.20	-1.0
3,377,236	+		DZA65_RS15570	0.20	+0.7
3,377,387	-		DZA65_RS15570	0.22	-0.7
3,377,635	+		DZA65_RS15570	0.25	-0.7
3,377,635	+		DZA65_RS15570	0.25	+0.1
3,377,635	+		DZA65_RS15570	0.25	+0.7
3,377,635	+		DZA65_RS15570	0.25	+1.1
3,377,636	-		DZA65_RS15570	0.25	+1.0
3,377,636	-		DZA65_RS15570	0.25	-0.4
3,377,636	-		DZA65_RS15570	0.25	+0.6
3,377,636	-				-1.7
3,377,636	-		DZA65_RS15570	0.25	-0.1
3,377,636	-		DZA65_RS15570	0.25	+0.9
3,377,636	-		DZA65_RS15570	0.25	+0.6
3,377,636	-		DZA65_RS15570	0.25	-0.0
3,377,636	-		DZA65_RS15570	0.25	-0.2
3,377,644	+		DZA65_RS15570	0.25	+0.2
3,377,644	+		DZA65_RS15570	0.25	-0.1
3,377,645	-		DZA65_RS15570	0.25	-0.0
3,377,645	-		DZA65_RS15570	0.25	-0.6
3,377,645	-		DZA65_RS15570	0.25	+1.3
3,377,893	+		DZA65_RS15570	0.28	-0.4
3,377,893	+		DZA65_RS15570	0.28	-1.0
3,378,003	+		DZA65_RS15570	0.29	-0.1
3,378,014	-		DZA65_RS15570	0.29	+0.6
3,378,014	-		DZA65_RS15570	0.29	+0.3
3,378,014	-				+1.3
3,378,014	-		DZA65_RS15570	0.29	+0.1
3,378,328	+		DZA65_RS15570	0.33	-2.6
3,378,478	+		DZA65_RS15570	0.35	+2.9
3,378,478	+		DZA65_RS15570	0.35	-1.1
3,378,478	+		DZA65_RS15570	0.35	-0.0
3,378,479	-		DZA65_RS15570	0.35	+0.3
3,378,569	+				+3.1
3,378,569	+		DZA65_RS15570	0.36	-1.3
3,378,569	+		DZA65_RS15570	0.36	-0.0
3,378,570	-		DZA65_RS15570	0.36	-0.3
3,378,570	-		DZA65_RS15570	0.36	+2.2
3,378,570	-		DZA65_RS15570	0.36	+0.3
3,378,572	+		DZA65_RS15570	0.36	-1.0
3,378,573	-		DZA65_RS15570	0.36	-0.2
3,378,721	+		DZA65_RS15570	0.37	-1.7
3,378,721	+		DZA65_RS15570	0.37	+1.3
3,378,899	+		DZA65_RS15570	0.39	+0.2
3,378,910	+		DZA65_RS15570	0.40	-1.1
3,378,910	+		DZA65_RS15570	0.40	-0.3
3,378,910	+		DZA65_RS15570	0.40	-0.9
3,378,910	+		DZA65_RS15570	0.40	+0.5
3,378,949	+		DZA65_RS15570	0.40	+0.3
3,378,949	+		DZA65_RS15570	0.40	+1.0
3,378,949	+		DZA65_RS15570	0.40	+0.3
3,378,950	-		DZA65_RS15570	0.40	+1.7
3,378,950	-		DZA65_RS15570	0.40	-0.0
3,378,950	-		DZA65_RS15570	0.40	+0.1
3,378,950	-		DZA65_RS15570	0.40	-1.3
3,378,950	-		DZA65_RS15570	0.40	-0.1
3,378,950	-		DZA65_RS15570	0.40	+0.3
3,379,192	+		DZA65_RS15570	0.43	+0.3
3,379,193	-		DZA65_RS15570	0.43	-0.1
3,379,193	-		DZA65_RS15570	0.43	+0.1
3,379,193	-		DZA65_RS15570	0.43	+2.1
3,379,221	+		DZA65_RS15570	0.43	+0.5
3,379,221	+		DZA65_RS15570	0.43	+0.8
3,379,221	+		DZA65_RS15570	0.43	+0.9
3,379,317	+		DZA65_RS15570	0.44	-0.2
3,379,358	+		DZA65_RS15570	0.45	-0.5
3,379,358	+		DZA65_RS15570	0.45	-0.3
3,379,358	+		DZA65_RS15570	0.45	+0.3
3,379,358	+		DZA65_RS15570	0.45	+0.9
3,379,358	+		DZA65_RS15570	0.45	-0.1
3,379,358	+		DZA65_RS15570	0.45	-0.0
3,379,359	-		DZA65_RS15570	0.45	+0.2
3,379,359	-		DZA65_RS15570	0.45	-0.1
3,379,359	-		DZA65_RS15570	0.45	+0.9
3,379,359	-		DZA65_RS15570	0.45	+0.6
3,379,359	-		DZA65_RS15570	0.45	+1.4
3,379,359	-		DZA65_RS15570	0.45	-0.3
3,379,360	+		DZA65_RS15570	0.45	-0.7
3,379,360	+		DZA65_RS15570	0.45	+1.0
3,379,360	+		DZA65_RS15570	0.45	+1.5
3,379,360	+		DZA65_RS15570	0.45	+0.2
3,379,360	+		DZA65_RS15570	0.45	+0.2
3,379,361	-		DZA65_RS15570	0.45	+0.3
3,379,361	-		DZA65_RS15570	0.45	+0.3
3,379,361	-		DZA65_RS15570	0.45	+1.3
3,379,361	-		DZA65_RS15570	0.45	-0.1
3,379,361	-		DZA65_RS15570	0.45	-0.4
3,379,361	-		DZA65_RS15570	0.45	-0.7
3,379,361	-		DZA65_RS15570	0.45	+0.3
3,379,482	+		DZA65_RS15570	0.46	-0.0
3,379,483	-		DZA65_RS15570	0.46	+0.3
3,379,584	+		DZA65_RS15570	0.48	-1.7
3,379,584	+				+0.9
3,379,584	+		DZA65_RS15570	0.48	-0.1
3,379,584	+		DZA65_RS15570	0.48	+1.9
3,379,584	+		DZA65_RS15570	0.48	+0.1
3,379,585	-		DZA65_RS15570	0.48	+0.7
3,379,585	-		DZA65_RS15570	0.48	-1.2
3,379,585	-		DZA65_RS15570	0.48	+1.5
3,379,676	+		DZA65_RS15570	0.49	+0.0
3,379,677	-		DZA65_RS15570	0.49	-0.7
3,379,677	-		DZA65_RS15570	0.49	-0.7
3,379,677	-		DZA65_RS15570	0.49	-0.0
3,379,744	+		DZA65_RS15570	0.49	+0.0
3,379,744	+		DZA65_RS15570	0.49	+0.3
3,379,744	+		DZA65_RS15570	0.49	-0.0
3,379,744	+		DZA65_RS15570	0.49	+0.1
3,379,745	-		DZA65_RS15570	0.49	-0.2
3,379,745	-		DZA65_RS15570	0.49	-1.0
3,379,745	-		DZA65_RS15570	0.49	+0.9
3,379,801	+		DZA65_RS15570	0.50	-1.2
3,379,802	-		DZA65_RS15570	0.50	+0.6
3,379,802	-		DZA65_RS15570	0.50	-2.3
3,379,802	-		DZA65_RS15570	0.50	+1.1
3,379,870	+		DZA65_RS15570	0.51	+1.4
3,380,048	+		DZA65_RS15570	0.53	+0.0
3,380,048	+		DZA65_RS15570	0.53	+0.7
3,380,048	+		DZA65_RS15570	0.53	-0.6
3,380,049	-		DZA65_RS15570	0.53	-0.7
3,380,778	+		DZA65_RS15570	0.62	-0.9
3,380,778	+		DZA65_RS15570	0.62	-0.4
3,380,778	+		DZA65_RS15570	0.62	-0.1
3,380,778	+		DZA65_RS15570	0.62	-2.9
3,380,779	-		DZA65_RS15570	0.62	+0.7
3,380,779	-		DZA65_RS15570	0.62	+1.0
3,380,779	-		DZA65_RS15570	0.62	-0.1
3,380,779	-		DZA65_RS15570	0.62	-0.7
3,380,830	-		DZA65_RS15570	0.62	-0.0
3,380,927	+		DZA65_RS15570	0.63	-0.7
3,380,928	-		DZA65_RS15570	0.63	+0.8
3,381,120	+		DZA65_RS15570	0.66	+0.8
3,381,120	+		DZA65_RS15570	0.66	+0.9
3,381,120	+		DZA65_RS15570	0.66	+0.1
3,381,121	-		DZA65_RS15570	0.66	+0.6
3,381,121	-		DZA65_RS15570	0.66	-0.7
3,381,121	-		DZA65_RS15570	0.66	+0.6
3,381,201	+		DZA65_RS15570	0.66	-0.9
3,381,201	+		DZA65_RS15570	0.66	-0.8
3,381,201	+		DZA65_RS15570	0.66	-1.1
3,381,226	+		DZA65_RS15570	0.67	+1.0
3,381,226	+		DZA65_RS15570	0.67	+0.3
3,381,226	+		DZA65_RS15570	0.67	+1.6
3,381,226	+		DZA65_RS15570	0.67	+0.3
3,381,226	+		DZA65_RS15570	0.67	+0.3
3,381,226	+		DZA65_RS15570	0.67	+0.0
3,381,226	+		DZA65_RS15570	0.67	+0.3
3,381,227	-		DZA65_RS15570	0.67	-0.5
3,381,227	-		DZA65_RS15570	0.67	-0.4
3,381,227	-		DZA65_RS15570	0.67	-1.3
3,381,227	-		DZA65_RS15570	0.67	-2.5
3,381,227	-		DZA65_RS15570	0.67	+0.8
3,381,227	-		DZA65_RS15570	0.67	-0.6
3,381,508	+		DZA65_RS15570	0.70	-0.3
3,381,508	+		DZA65_RS15570	0.70	+1.0
3,381,508	+		DZA65_RS15570	0.70	-0.7
3,381,509	-		DZA65_RS15570	0.70	+1.5
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3,382,904	+		DZA65_RS15570	0.86	-1.1
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3,383,618	+				+1.3
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3,384,906	+		DZA65_RS15580	0.30	-1.3
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