Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15295

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,317,181	-				-0.7
3,317,191	-				+1.3
3,317,242	+				-1.2
3,317,291	+				+0.7
3,317,374	+				-1.1
3,317,375	-				-1.3
3,317,375	-				+0.5
3,317,375	-				-0.6
3,317,375	-				-0.7
3,317,425	+				+1.0
3,317,436	+				+0.3
3,317,437	-				-0.1
3,317,539	-		DZA65_RS15290	0.15	+0.3
3,317,690	+		DZA65_RS15290	0.40	-1.3
3,317,690	+		DZA65_RS15290	0.40	+0.0
3,317,690	+		DZA65_RS15290	0.40	-0.0
3,317,690	+		DZA65_RS15290	0.40	-0.5
3,317,691	-		DZA65_RS15290	0.40	-0.0
3,317,691	-		DZA65_RS15290	0.40	-1.5
3,317,691	-		DZA65_RS15290	0.40	+2.3
3,317,691	-		DZA65_RS15290	0.40	+0.6
3,317,691	-		DZA65_RS15290	0.40	-1.3
3,317,736	+		DZA65_RS15290	0.47	-2.3
3,317,739	+		DZA65_RS15290	0.47	-2.0
3,317,927	+		DZA65_RS15290	0.78	+0.5
3,317,927	+		DZA65_RS15290	0.78	-0.8
3,317,927	+		DZA65_RS15290	0.78	-2.5
3,317,927	+		DZA65_RS15290	0.78	-0.1
3,317,927	+		DZA65_RS15290	0.78	-0.9
3,317,928	-		DZA65_RS15290	0.78	-1.3
3,317,928	-		DZA65_RS15290	0.78	+0.5
3,317,928	-		DZA65_RS15290	0.78	-0.1
3,317,928	-		DZA65_RS15290	0.78	+0.4
3,317,928	-		DZA65_RS15290	0.78	-0.4
3,317,928	-		DZA65_RS15290	0.78	-0.0
3,317,928	-		DZA65_RS15290	0.78	-1.6
3,317,937	+		DZA65_RS15290	0.80	+0.6
3,317,937	+		DZA65_RS15290	0.80	+1.1
3,317,937	+		DZA65_RS15290	0.80	-0.6
3,317,937	+		DZA65_RS15290	0.80	+0.6
3,317,937	+		DZA65_RS15290	0.80	+0.1
3,317,937	+		DZA65_RS15290	0.80	+0.0
3,317,937	+		DZA65_RS15290	0.80	+0.9
3,317,937	+		DZA65_RS15290	0.80	-0.2
3,317,938	-		DZA65_RS15290	0.80	-0.5
3,317,938	-		DZA65_RS15290	0.80	-1.4
3,317,938	-		DZA65_RS15290	0.80	-0.5
3,317,938	-		DZA65_RS15290	0.80	-0.6
3,317,941	+		DZA65_RS15290	0.80	+0.3
3,317,942	-		DZA65_RS15290	0.80	-0.5
3,317,995	+		DZA65_RS15290	0.89	+0.9
3,317,996	-		DZA65_RS15290	0.89	-0.1
3,318,123	-				+2.6
3,318,123	-				+1.3
3,318,123	-				-0.4
3,318,123	-				+1.1
3,318,130	+				+0.1
3,318,130	+				+1.9
3,318,130	+				-0.5
3,318,130	+				-0.2
3,318,130	+				+0.3
3,318,130	+				-1.2
3,318,130	+				-2.0
3,318,130	+				+1.1
3,318,130	+				-0.4
3,318,130	+				+0.3
3,318,131	-				+0.6
3,318,131	-				-0.4
3,318,131	-				+0.3
3,318,131	-				+0.1
3,318,131	-				-0.8
3,318,131	-				-0.0
3,318,131	-				+0.4
3,318,131	-				-0.3
3,318,142	-				-1.3
3,318,142	-				+0.9
3,318,142	-				+0.7
3,318,149	-				+1.3
3,318,153	+				-1.0
3,318,178	+				-0.2
3,318,288	+		DZA65_RS15295	0.25	+0.1
3,318,288	+		DZA65_RS15295	0.25	+0.5
3,318,288	+		DZA65_RS15295	0.25	+0.1
3,318,288	+		DZA65_RS15295	0.25	-2.3
3,318,288	+		DZA65_RS15295	0.25	-0.3
3,318,288	+		DZA65_RS15295	0.25	-0.5
3,318,288	+		DZA65_RS15295	0.25	-0.7
3,318,289	-		DZA65_RS15295	0.25	-0.7
3,318,289	-		DZA65_RS15295	0.25	-0.0
3,318,289	-		DZA65_RS15295	0.25	+0.7
3,318,289	-		DZA65_RS15295	0.25	+1.7
3,318,289	-		DZA65_RS15295	0.25	-0.3
3,318,289	-		DZA65_RS15295	0.25	-0.4
3,318,289	-		DZA65_RS15295	0.25	-1.2
3,318,292	+		DZA65_RS15295	0.25	-0.3
3,318,292	+		DZA65_RS15295	0.25	-0.4
3,318,292	+		DZA65_RS15295	0.25	-2.4
3,318,292	+		DZA65_RS15295	0.25	+0.9
3,318,293	-		DZA65_RS15295	0.26	-0.1
3,318,293	-		DZA65_RS15295	0.26	-0.7
3,318,293	-		DZA65_RS15295	0.26	+0.1
3,318,293	-		DZA65_RS15295	0.26	+0.0
3,318,293	-		DZA65_RS15295	0.26	-2.3
3,318,293	-		DZA65_RS15295	0.26	+0.5
3,318,293	-		DZA65_RS15295	0.26	+0.3
3,318,382	-		DZA65_RS15295	0.42	+0.2
3,318,382	-		DZA65_RS15295	0.42	+0.3
3,318,382	-		DZA65_RS15295	0.42	-0.5
3,318,404	+		DZA65_RS15295	0.46	-0.0
3,318,404	+		DZA65_RS15295	0.46	-0.5
3,318,490	+		DZA65_RS15295	0.61	+0.3
3,318,506	-		DZA65_RS15295	0.64	-1.1
3,318,589	+		DZA65_RS15295	0.79	+0.0
3,318,590	-		DZA65_RS15295	0.79	+0.4
3,318,590	-		DZA65_RS15295	0.79	-1.3
3,318,605	+		DZA65_RS15295	0.82	+0.2
3,318,606	-		DZA65_RS15295	0.82	-0.3
3,318,709	+				-0.1
3,318,710	-				+0.5
3,318,710	-				+0.7
3,318,710	-				-1.0
3,318,727	+				+1.1
3,318,727	+				+0.9
3,318,727	+				+1.3
3,318,727	+				-0.6
3,318,728	-				-1.0
3,318,741	-				-0.0
3,318,742	+				-0.5
3,318,742	+				-1.5
3,318,742	+				+0.2
3,318,742	+				+0.4
3,318,742	+				-1.7
3,318,742	+				+0.6
3,318,742	+				-1.7
3,318,742	+				-0.7
3,318,742	+				+0.1
3,318,742	+				-0.2
3,318,742	+				-0.7
3,318,743	-				-2.9
3,318,743	-				+0.1
3,318,743	-				-0.1
3,318,743	-				+0.5
3,318,743	-				-0.7
3,318,743	-				+0.1
3,318,746	-				+0.5
3,318,756	+				-1.6
3,318,756	+				+0.3
3,318,757	-				-0.9
3,318,757	-				-0.7
3,318,778	-				+1.0
3,318,827	-				-0.8
3,318,837	+				+1.9
3,318,850	+				+0.6
3,318,850	+				-0.1
3,318,850	+				+0.3
3,318,854	+				-0.5
3,318,854	+				-0.3
3,318,854	+				-0.3
3,318,855	-				+0.0
3,318,855	-				+0.3
3,318,855	-				-0.9
3,318,855	-				+0.2
3,318,855	-				-1.0
3,318,855	-				-1.0
3,318,855	-				+0.4
3,318,876	+				-0.9
3,318,963	+				+1.2
3,318,963	+				-0.0
3,318,963	+				+0.7
3,318,963	+				+0.3
3,318,963	+				-0.0
3,318,963	+				+0.6
3,318,963	+				-0.7
3,318,963	+				-0.9
3,318,963	+				-0.4
3,318,964	-				+0.3
3,318,964	-				+0.3
3,318,964	-				-0.3
3,318,964	-				-0.0
3,318,964	-				+0.4
3,318,964	-				-1.7
3,318,964	-				+1.0
3,318,964	-				-0.2
3,318,964	-				-0.3
3,318,964	-				-0.5
3,318,964	-				+0.2
3,318,966	+				-0.8
3,318,967	-				+0.1
3,318,967	-				+0.9
3,318,967	-				+1.1
3,318,967	-				-1.3
3,319,021	+		DZA65_RS15300	0.11	+0.4
3,319,021	+		DZA65_RS15300	0.11	+1.0
3,319,021	+		DZA65_RS15300	0.11	-0.1
3,319,021	+		DZA65_RS15300	0.11	-0.3
3,319,021	+		DZA65_RS15300	0.11	+0.1
3,319,022	-		DZA65_RS15300	0.11	-0.1
3,319,022	-		DZA65_RS15300	0.11	-0.9
3,319,022	-		DZA65_RS15300	0.11	+0.6
3,319,022	-		DZA65_RS15300	0.11	+0.3
3,319,022	-		DZA65_RS15300	0.11	-1.5
3,319,022	-		DZA65_RS15300	0.11	+0.4
3,319,022	-		DZA65_RS15300	0.11	+0.7
3,319,022	-		DZA65_RS15300	0.11	-0.5
3,319,022	-		DZA65_RS15300	0.11	+1.0
3,319,022	-		DZA65_RS15300	0.11	+0.7
3,319,022	-		DZA65_RS15300	0.11	-0.2
3,319,022	-		DZA65_RS15300	0.11	-0.4
3,319,026	+		DZA65_RS15300	0.12	+0.3
3,319,026	+		DZA65_RS15300	0.12	-0.6
3,319,026	+		DZA65_RS15300	0.12	-0.5
3,319,097	+		DZA65_RS15300	0.23	+2.3
3,319,182	+		DZA65_RS15300	0.37	+0.3
3,319,183	-		DZA65_RS15300	0.37	-0.3
3,319,183	-		DZA65_RS15300	0.37	-0.3
3,319,207	+		DZA65_RS15300	0.41	-0.2
3,319,208	-		DZA65_RS15300	0.41	-0.2
3,319,208	-		DZA65_RS15300	0.41	-2.9
3,319,223	-		DZA65_RS15300	0.43	-0.3
3,319,223	-		DZA65_RS15300	0.43	+0.1
3,319,238	+		DZA65_RS15300	0.46	-0.3
3,319,239	-		DZA65_RS15300	0.46	-1.2
3,319,311	+		DZA65_RS15300	0.57	+0.1
3,319,311	+		DZA65_RS15300	0.57	+0.9
3,319,312	-		DZA65_RS15300	0.57	-0.7
3,319,312	-		DZA65_RS15300	0.57	-2.0
3,319,332	+		DZA65_RS15300	0.60	+1.0
3,319,372	-		DZA65_RS15300	0.67	+0.6
3,319,426	-		DZA65_RS15300	0.75	-1.3
3,319,430	+		DZA65_RS15300	0.76	+1.9
3,319,430	+		DZA65_RS15300	0.76	-0.2
3,319,430	+		DZA65_RS15300	0.76	-0.1
3,319,430	+		DZA65_RS15300	0.76	+0.5
3,319,430	+		DZA65_RS15300	0.76	-0.4
3,319,431	-		DZA65_RS15300	0.76	-0.2
3,319,431	-		DZA65_RS15300	0.76	+1.1
3,319,445	+		DZA65_RS15300	0.78	+1.0
3,319,445	+		DZA65_RS15300	0.78	-1.9
3,319,445	+		DZA65_RS15300	0.78	-0.3
3,319,445	+		DZA65_RS15300	0.78	-0.5
3,319,445	+		DZA65_RS15300	0.78	-1.7
3,319,445	+		DZA65_RS15300	0.78	+0.8
3,319,445	+		DZA65_RS15300	0.78	-1.0
3,319,445	+		DZA65_RS15300	0.78	+0.3
3,319,445	+		DZA65_RS15300	0.78	-0.3
3,319,446	-		DZA65_RS15300	0.79	-0.0
3,319,446	-		DZA65_RS15300	0.79	-1.3
3,319,446	-		DZA65_RS15300	0.79	-0.3
3,319,446	-		DZA65_RS15300	0.79	-0.5
3,319,446	-		DZA65_RS15300	0.79	-0.7
3,319,446	-		DZA65_RS15300	0.79	+0.8
3,319,446	-		DZA65_RS15300	0.79	-0.5
3,319,446	-		DZA65_RS15300	0.79	-0.5
3,319,446	-		DZA65_RS15300	0.79	-0.0
3,319,446	-		DZA65_RS15300	0.79	-1.0
3,319,446	-		DZA65_RS15300	0.79	-1.9
3,319,446	-		DZA65_RS15300	0.79	-0.7
3,319,446	-		DZA65_RS15300	0.79	-0.4
3,319,449	+		DZA65_RS15300	0.79	-0.1
3,319,449	+		DZA65_RS15300	0.79	+0.3
3,319,449	+		DZA65_RS15300	0.79	+0.6
3,319,449	+		DZA65_RS15300	0.79	+0.4
3,319,450	-		DZA65_RS15300	0.79	-0.7
3,319,450	-		DZA65_RS15300	0.79	-0.3
3,319,450	-		DZA65_RS15300	0.79	-0.6
3,319,526	+				-0.8
3,319,557	+				-0.2
3,319,557	+				+1.1
3,319,558	-				+0.3
3,319,645	+				+0.6
3,319,646	-				-0.3
3,319,703	+				+0.3